Rmu_ssc0000418.1_g000001
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000418.1
OG0000357
Physical Location & Seq
Reverse (-)
1 .. 1171
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000418.1_g000001.1.cds

Sequence Viewer

Length: 682 bp
atgaaagaaagcaagcaagaagaaagctttcattatgctgtgcagctggtggtttcatctgcgctgcccatgtccatgcaatcagccattgagctcggactttttgatatcatagccagagcaggttcgggtgcggggctctctgcaccccagattgctgcccagattggcacccagaatcctgaggcagcctttatgctggatcgaatccttaggctcctcgccactcactctgtacttggttgctctctggttgatggccaaaggctctacaggctctccgcggtgtccaagtactttgtgactgaagatggcgtttcgttgggcttcgtcatggcattgtttcaagacaaggtcttcataaacagttggtcacaactgaaagacgcaattattgaaggtggaattccatttgagaggttccatggcatgcctacctttgagtattcaggttcggacccgaggtttaatcaggttttcaacacagcaatgttcaaccacaccactcttgttgtgaagcggattcttgatctctacaggggttttgagcaccttggggagcttgttgatgttggtggtggtttgggagtagctctcagtctaatcacttccagataccctcatattaagggaatcaattacgatctgccgcatgttataaaatatgctcacccttctcctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

227

Amino Acids

24.97

Weight (kDa)

6.23

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 659
Acc36I ACCTGC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 170
AccII CGCG 1 cut(s) 284
AciI CCGC 5 cut(s) 134, 282, 284, 520, 650
AclWI GGATC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 2 cut(s) 237, 296
AgsI TTSAA 4 cut(s) 347, 398, 481, 496
AluBI AGCT 5 cut(s) 27, 46, 94, 562, 593
AluI AGCT 5 cut(s) 27, 46, 94, 562, 593
Alw21I GWGCWC 2 cut(s) 96, 552
AlwI GGATC 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 4 cut(s) 43, 64, 158, 188
ApoI RAATTY 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 1 cut(s) 662
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 1 cut(s) 457
AxyI CCTNAGG 2 cut(s) 183, 212
BalI TGGCCA 1 cut(s) 261
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 2 cut(s) 96, 141
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 96, 552
BbvI GCAGC 4 cut(s) 51, 55, 145, 200
BccI CCATC 2 cut(s) 251, 305
BfmI CTRYAG 2 cut(s) 271, 535
BfuAI ACCTGC 1 cut(s) 113
BisI GCNGC 5 cut(s) 44, 65, 159, 189, 650
BlsI GCNGC 5 cut(s) 45, 66, 160, 190, 651
BmcAI AGTACT 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 4 cut(s) 172, 218, 422, 459
BpiI GAAGAC 1 cut(s) 349
BplI GAGNNNNNCTC 2 cut(s) 579, 611
BsaJI CCNNGG 4 cut(s) 282, 424, 461, 553
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse21I CCTNAGG 2 cut(s) 183, 212
Bse3DI GCAATG 1 cut(s) 495
BseDI CCNNGG 4 cut(s) 282, 424, 461, 553
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 174, 610
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 4 cut(s) 51, 55, 145, 200
BsgI GTGCAG 2 cut(s) 62, 129
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 170
BsiHKAI GWGCWC 2 cut(s) 96, 552
BsiHKCI CYCGRG 1 cut(s) 460
BsnI GGCC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 460
Bsp1286I GDGCHC 3 cut(s) 96, 141, 552
Bsp143I GATC 3 cut(s) 202, 529, 643
Bsp19I CCATGG 1 cut(s) 424
BspACI CCGC 5 cut(s) 134, 282, 284, 520, 650
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 2 cut(s) 175, 609
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 4 cut(s) 172, 218, 422, 459
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 495
BssECI CCNNGG 4 cut(s) 282, 424, 461, 553
BssMI GATC 3 cut(s) 202, 529, 643
BssT1I CCWWGG 2 cut(s) 424, 553
Bst4CI ACNGT 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 14, 431
BstDEI CTNAG 3 cut(s) 183, 212, 596
BstDSI CCRYGG 2 cut(s) 282, 424
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 3 cut(s) 205, 532, 646
BstMBI GATC 3 cut(s) 202, 529, 643
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstNSI RCATGY 2 cut(s) 433, 656
BstSFI CTRYAG 2 cut(s) 271, 535
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 4 cut(s) 51, 55, 145, 200
BstV2I GAAGAC 1 cut(s) 349
Bsu36I CCTNAGG 2 cut(s) 183, 212
BsuRI GGCC 1 cut(s) 261
BtgI CCRYGG 2 cut(s) 282, 424
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 14, 431
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 457
Cfr42I CCGCGG 1 cut(s) 285
CseI GACGC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 236, 295
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 6 cut(s) 70, 76, 334, 425, 430, 653
CviQI GTAC 2 cut(s) 236, 295
DdeI CTNAG 3 cut(s) 183, 212, 596
DpnI GATC 3 cut(s) 204, 531, 645
DpnII GATC 3 cut(s) 202, 529, 643
EaeI YGGCCR 1 cut(s) 259
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 424, 553
Eco24I GRGCYC 2 cut(s) 96, 141
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 2 cut(s) 183, 212
Eco88I CYCGRG 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 405
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 424, 553
EcoT38I GRGCYC 2 cut(s) 96, 141
ErhI CCWWGG 2 cut(s) 424, 553
FaeI CATG 6 cut(s) 73, 79, 337, 428, 433, 656
FatI CATG 6 cut(s) 69, 75, 333, 424, 429, 652
FauI CCCGC 1 cut(s) 127
Fnu4HI GCNGC 5 cut(s) 44, 65, 159, 189, 650
FriOI GRGCYC 2 cut(s) 96, 141
Fsp4HI GCNGC 5 cut(s) 44, 65, 159, 189, 650
GlaI GCGC 1 cut(s) 63
GluI GCNGC 5 cut(s) 44, 65, 159, 189, 650
HaeIII GGCC 1 cut(s) 261
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 64
Hin1II CATG 6 cut(s) 73, 79, 337, 428, 433, 656
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 4 cut(s) 178, 207, 523, 633
HphI GGTGA 1 cut(s) 662
Hpy188I TCNGA 2 cut(s) 98, 457
Hpy188III TCNNGA 4 cut(s) 182, 347, 527, 612
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 3 cut(s) 43, 79, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 3 cut(s) 183, 212, 596
Hsp92II CATG 6 cut(s) 73, 79, 337, 428, 433, 656
HspAI GCGC 1 cut(s) 62
KspI CCGCGG 1 cut(s) 285
Kzo9I GATC 3 cut(s) 202, 529, 643
LmnI GCTCC 2 cut(s) 222, 559
Lsp1109I GCAGC 4 cut(s) 51, 55, 145, 200
MaeIII GTNAC 2 cut(s) 301, 372
MalI GATC 3 cut(s) 204, 531, 645
MboI GATC 3 cut(s) 202, 529, 643
MboII GAAGA 3 cut(s) 32, 320, 349
MhlI GDGCHC 3 cut(s) 96, 141, 552
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 3 cut(s) 390, 405, 637
MluNI TGGCCA 1 cut(s) 261
MnlI CCTC 5 cut(s) 178, 230, 411, 456, 630
Mox20I TGGCCA 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 261
MseI TTAA 2 cut(s) 468, 627
MslI CAYNNNNRTG 2 cut(s) 74, 488
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 46, 284
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 274
NcoI CCATGG 1 cut(s) 424
NdeII GATC 3 cut(s) 202, 529, 643
NlaIII CATG 6 cut(s) 73, 79, 337, 428, 433, 656
NlaIV GGNNCC 4 cut(s) 172, 218, 422, 459
NmuCI GTSAC 2 cut(s) 301, 372
NspI RCATGY 2 cut(s) 433, 656
PaeI GCATGC 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 4 cut(s) 178, 207, 523, 633
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 5 cut(s) 45, 66, 160, 190, 651
PsiI TTATAA 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 96
PspN4I GGNNCC 4 cut(s) 172, 218, 422, 459
PspPI GGNCC 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 2 cut(s) 237, 296
RsaNI GTAC 2 cut(s) 236, 295
RseI CAYNNNNRTG 2 cut(s) 74, 488
SacI GAGCTC 1 cut(s) 96
SacII CCGCGG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 468, 627
SatI GCNGC 5 cut(s) 44, 65, 159, 189, 650
Sau3AI GATC 3 cut(s) 202, 529, 643
Sau96I GGNCC 1 cut(s) 457
ScaI AGTACT 1 cut(s) 296
SduI GDGCHC 3 cut(s) 96, 141, 552
SfcI CTRYAG 2 cut(s) 271, 535
Sfr303I CCGCGG 1 cut(s) 285
SgrBI CCGCGG 1 cut(s) 285
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 2 cut(s) 74, 488
SphI GCATGC 1 cut(s) 433
Sse9I AATT 3 cut(s) 390, 405, 637
SsiI CCGC 5 cut(s) 134, 282, 284, 520, 650
SstI GAGCTC 1 cut(s) 96
StyI CCWWGG 2 cut(s) 424, 553
TaaI ACNGT 1 cut(s) 368
TaqI TCGA 1 cut(s) 205
TasI AATT 3 cut(s) 390, 405, 637
TatI WGTACW 2 cut(s) 235, 294
TauI GCSGC 1 cut(s) 652
TfiI GAWTC 4 cut(s) 178, 207, 523, 633
Tru1I TTAA 2 cut(s) 468, 627
Tru9I TTAA 2 cut(s) 468, 627
TseFI GTSAC 2 cut(s) 301, 372
TseI GCWGC 4 cut(s) 43, 64, 158, 188
Tsp45I GTSAC 2 cut(s) 301, 372
TspDTI ATGAA 4 cut(s) 17, 20, 45, 349
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 1 cut(s) 405
XceI RCATGY 2 cut(s) 433, 656
XmnI GAANNNNTTC 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.