Rh1DG292800
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
51749854 .. 51751312
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG292800.1

Sequence Viewer

Length: 984 bp
ATGGCCTCTTCACTGGAAACAAAACCCAAAGCTATAGTTCTTGACGATGAAAGAAAGCAAGAAGAAGAAAGCTTTCATTTTGCTGTGCAGCTGGTGGTTTCATCTGCGCTGCCCATGTCCATGCAATCAGCCATTGAGCTCGGACTTTTTGATATCATAGCCAGAGCAGGTTCGGGTGCGGGGCTCTCTGCACCCCAGATTGCTGCCCAGATTGGCACCCAGAATCCTGAGGCAGCCTTTATGCTGGATCGAATCCTTAGGCTCCTCGCCACTCACTCTGTACTTGGTTGCTCTCTGGTTGATGGCCAAAGGCTCTACAGGCTCTCCGCGGTGTCCAAGCACTTTGTGACTGAAGATGGCGTTTCGCTGGGCTTCGTCATGGCATTGTTCCAAGACAAGGTCTTCATAAACAGTTGGTCACAACTGAAAGACGCAGTTATTGAAGGTGGAATTCCATTTGAGAGGTTCCATGGCATGCCTACCTTTGAGTATTCAGGTTCGGACCCGAGGTTTAATCAGGTTTTCAACACAGCAATGTTCAACCACACCACTCTTGTTGTGAAGCGGATTCTTGATCTCTACAGGGGTTTTGAGCACCTTGGGGAGCTTGTTGATGTTGGTGGTGGTTTGGGAGCTACTCTCAGTCTAATCACTTCCAGATACCCTCATATTAAGGGAATCAATTACGATCTGCCGCATGTTATAAAATATGCTCACCCTTCTCCTGGTGTCGAACATGTTGGAGGAGACATGTTTGCCCATGTTCCAAGTGGAGATGCCATTTTCTTAAAGGGCATACTTCACGATTGGACGGATGAGGACTGCATAAAGTTGTTGAAGAATTGTTACAGTGCTACTCCAGACGATGGAAAAGTAATCGTTTTGGACGCAGTTCTTCCAGTTTTGCCTTGGAGGCAGTTCTTCCAGTTTTGCCGGAAACAAGCACTACTGAGAAGATCACCACCCAACTGGATGTGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

327

Amino Acids

36.17

Weight (kDa)

6.05

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 30 - 117 2.5e-18 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 139 - 303 2e-54 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 866
AccII CGCG 1 cut(s) 329
AciI CCGC 5 cut(s) 179, 327, 329, 565, 695
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 450
AcuI CTGAAG 1 cut(s) 372
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 3 cut(s) 397, 725, 866
AflIII ACRYGT 2 cut(s) 736, 750
AgsI TTSAA 4 cut(s) 443, 526, 541, 838
AjnI CCWGG 1 cut(s) 724
AluBI AGCT 6 cut(s) 32, 72, 91, 139, 607, 635
AluI AGCT 6 cut(s) 32, 72, 91, 139, 607, 635
Alw21I GWGCWC 2 cut(s) 141, 597
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 2 cut(s) 3, 304
ApeKI GCWGC 4 cut(s) 88, 109, 203, 233
ApoI RAATTY 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 2 cut(s) 707, 951
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 1 cut(s) 502
AxyI CCTNAGG 2 cut(s) 228, 257
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 2 cut(s) 141, 186
BarI GAAGNNNNNNTAC 2 cut(s) 830, 862
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 2 cut(s) 141, 597
BbvI GCAGC 4 cut(s) 96, 100, 190, 245
BccI CCATC 3 cut(s) 296, 350, 860
BciT130I CCWGG 1 cut(s) 726
BcoDI GTCTC 1 cut(s) 741
BfmI CTRYAG 3 cut(s) 33, 316, 580
BfuAI ACCTGC 1 cut(s) 158
BglI GCCNNNNNGGC 1 cut(s) 913
BisI GCNGC 5 cut(s) 89, 110, 204, 234, 695
BlsI GCNGC 5 cut(s) 90, 111, 205, 235, 696
Bme1390I CCNGG 1 cut(s) 726
Bme18I GGWCC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 4 cut(s) 217, 263, 467, 504
BmrFI CCNGG 1 cut(s) 726
BmsI GCATC 1 cut(s) 766
BpiI GAAGAC 1 cut(s) 394
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BpmI CTGGAG 1 cut(s) 843
BsaJI CCNNGG 5 cut(s) 327, 469, 506, 598, 908
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 725, 866
Bse1I ACTGG 4 cut(s) 18, 899, 925, 974
Bse21I CCTNAGG 2 cut(s) 228, 257
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 5 cut(s) 327, 469, 506, 598, 908
BseGI GGATG 2 cut(s) 820, 978
BseLI CCNNNNNNNGG 3 cut(s) 397, 725, 866
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 3 cut(s) 219, 655, 941
BseNI ACTGG 4 cut(s) 18, 899, 925, 974
BseRI GAGGAG 2 cut(s) 254, 759
BseXI GCAGC 4 cut(s) 96, 100, 190, 245
BseYI CCCAGC 1 cut(s) 367
BsgI GTGCAG 2 cut(s) 107, 174
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 5, 306
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 2 cut(s) 141, 597
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 1 cut(s) 934
BslI CCNNNNNNNGG 3 cut(s) 397, 725, 866
BsmAI GTCTC 1 cut(s) 741
BsnI GGCC 2 cut(s) 5, 306
BsoBI CYCGRG 1 cut(s) 505
Bsp1286I GDGCHC 3 cut(s) 141, 186, 597
Bsp143I GATC 4 cut(s) 247, 574, 688, 956
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 5 cut(s) 179, 327, 329, 565, 695
BspANI GGCC 2 cut(s) 5, 306
BspCNI CTCAG 3 cut(s) 220, 654, 942
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 4 cut(s) 217, 263, 467, 504
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 4 cut(s) 18, 899, 925, 974
BssECI CCNNGG 5 cut(s) 327, 469, 506, 598, 908
BssMI GATC 4 cut(s) 247, 574, 688, 956
BssT1I CCWWGG 3 cut(s) 469, 598, 908
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 413, 851
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 4 cut(s) 228, 257, 641, 950
BstDSI CCRYGG 2 cut(s) 327, 469
BstF5I GGATG 2 cut(s) 820, 978
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 4 cut(s) 250, 577, 691, 959
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 4 cut(s) 247, 574, 688, 956
BstMWI GCNNNNNNNGC 2 cut(s) 319, 913
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 4 cut(s) 478, 701, 740, 754
BstSCI CCNGG 1 cut(s) 724
BstSFI CTRYAG 3 cut(s) 33, 316, 580
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 4 cut(s) 96, 100, 190, 245
BstV2I GAAGAC 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 969
Bsu36I CCTNAGG 2 cut(s) 228, 257
BsuRI GGCC 2 cut(s) 5, 306
BtgI CCRYGG 2 cut(s) 327, 469
BtsCI GGATG 2 cut(s) 820, 978
BtsIMutI CAGTG 2 cut(s) 11, 856
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 476
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 502
Cfr42I CCGCGG 1 cut(s) 330
CseI GACGC 2 cut(s) 440, 896
Csp6I GTAC 1 cut(s) 281
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 9 cut(s) 115, 121, 379, 470, 475, 698, 737, 751, 761
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 4 cut(s) 228, 257, 641, 950
DpnI GATC 4 cut(s) 249, 576, 690, 958
DpnII GATC 4 cut(s) 247, 574, 688, 956
DraIII CACNNNGTG 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 3 cut(s) 469, 598, 908
Eco24I GRGCYC 2 cut(s) 141, 186
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 372
Eco81I CCTNAGG 2 cut(s) 228, 257
Eco88I CYCGRG 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 724
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 3 cut(s) 469, 598, 908
EcoT38I GRGCYC 2 cut(s) 141, 186
ErhI CCWWGG 3 cut(s) 469, 598, 908
FaeI CATG 9 cut(s) 118, 124, 382, 473, 478, 701, 740, 754, 764
FatI CATG 9 cut(s) 114, 120, 378, 469, 474, 697, 736, 750, 760
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 5 cut(s) 89, 110, 204, 234, 695
FokI GGATG 1 cut(s) 827
FriOI GRGCYC 2 cut(s) 141, 186
Fsp4HI GCNGC 5 cut(s) 89, 110, 204, 234, 695
GlaI GCGC 1 cut(s) 108
GluI GCNGC 5 cut(s) 89, 110, 204, 234, 695
GsaI CCCAGC 1 cut(s) 371
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 2 cut(s) 5, 306
HapII CCGG 1 cut(s) 934
HgaI GACGC 2 cut(s) 440, 896
HhaI GCGC 1 cut(s) 109
Hin1II CATG 9 cut(s) 118, 124, 382, 473, 478, 701, 740, 754, 764
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 4 cut(s) 223, 252, 568, 678
HpaII CCGG 1 cut(s) 934
HphI GGTGA 2 cut(s) 707, 951
Hpy188I TCNGA 2 cut(s) 143, 502
Hpy188III TCNNGA 6 cut(s) 41, 227, 572, 657, 803, 860
HpyAV CCTTC 2 cut(s) 437, 729
HpyCH4III ACNGT 2 cut(s) 413, 851
HpyCH4V TGCA 4 cut(s) 88, 124, 191, 825
HpyF10VI GCNNNNNNNGC 2 cut(s) 319, 913
HpyF3I CTNAG 4 cut(s) 228, 257, 641, 950
Hsp92II CATG 9 cut(s) 118, 124, 382, 473, 478, 701, 740, 754, 764
HspAI GCGC 1 cut(s) 107
KspI CCGCGG 1 cut(s) 330
Kzo9I GATC 4 cut(s) 247, 574, 688, 956
LmnI GCTCC 3 cut(s) 267, 604, 632
Lsp1109I GCAGC 4 cut(s) 96, 100, 190, 245
LweI GCATC 1 cut(s) 766
MaeIII GTNAC 3 cut(s) 346, 417, 845
MalI GATC 4 cut(s) 249, 576, 690, 958
MboI GATC 4 cut(s) 247, 574, 688, 956
MboII GAAGA 8 cut(s) 74, 77, 365, 394, 850, 887, 913, 966
MhlI GDGCHC 3 cut(s) 141, 186, 597
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 3 cut(s) 450, 682, 841
MluNI TGGCCA 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 721
MnlI CCTC 9 cut(s) 16, 223, 275, 456, 501, 675, 737, 811, 906
Mox20I TGGCCA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 72
MscI TGGCCA 1 cut(s) 306
MseI TTAA 3 cut(s) 513, 672, 788
MslI CAYNNNNRTG 2 cut(s) 119, 533
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 2 cut(s) 91, 329
MspI CCGG 1 cut(s) 934
MspR9I CCNGG 1 cut(s) 726
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 319, 913
NcoI CCATGG 1 cut(s) 469
NdeII GATC 4 cut(s) 247, 574, 688, 956
NlaIII CATG 9 cut(s) 118, 124, 382, 473, 478, 701, 740, 754, 764
NlaIV GGNNCC 4 cut(s) 217, 263, 467, 504
NmuCI GTSAC 2 cut(s) 346, 417
NspI RCATGY 4 cut(s) 478, 701, 740, 754
PaeI GCATGC 1 cut(s) 478
PciI ACATGT 2 cut(s) 736, 750
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 4 cut(s) 223, 252, 568, 678
PflFI GACNNNGTC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 866
PkrI GCNGC 5 cut(s) 90, 111, 205, 235, 696
PscI ACATGT 2 cut(s) 736, 750
PsiI TTATAA 1 cut(s) 704
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 4 cut(s) 217, 263, 467, 504
PspPI GGNCC 1 cut(s) 502
PsyI GACNNNGTC 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 2 cut(s) 119, 533
SacI GAGCTC 1 cut(s) 141
SacII CCGCGG 1 cut(s) 330
SaqAI TTAA 3 cut(s) 513, 672, 788
SatI GCNGC 5 cut(s) 89, 110, 204, 234, 695
Sau3AI GATC 4 cut(s) 247, 574, 688, 956
Sau96I GGNCC 1 cut(s) 502
ScrFI CCNGG 1 cut(s) 726
SduI GDGCHC 3 cut(s) 141, 186, 597
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 3 cut(s) 33, 316, 580
Sfr303I CCGCGG 1 cut(s) 330
SgrBI CCGCGG 1 cut(s) 330
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 2 cut(s) 119, 533
SphI GCATGC 1 cut(s) 478
Sse9I AATT 3 cut(s) 450, 682, 841
SsiI CCGC 5 cut(s) 179, 327, 329, 565, 695
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 724
StyI CCWWGG 3 cut(s) 469, 598, 908
TaaI ACNGT 2 cut(s) 413, 851
TaqI TCGA 2 cut(s) 250, 732
TasI AATT 3 cut(s) 450, 682, 841
TatI WGTACW 1 cut(s) 280
TauI GCSGC 1 cut(s) 697
TfiI GAWTC 4 cut(s) 223, 252, 568, 678
Tru1I TTAA 3 cut(s) 513, 672, 788
Tru9I TTAA 3 cut(s) 513, 672, 788
TscAI CASTG 2 cut(s) 18, 856
TseFI GTSAC 2 cut(s) 346, 417
TseI GCWGC 4 cut(s) 88, 109, 203, 233
Tsp45I GTSAC 2 cut(s) 346, 417
TspDTI ATGAA 4 cut(s) 63, 65, 90, 394
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 2 cut(s) 18, 856
Tth111I GACNNNGTC 1 cut(s) 398
Van91I CCANNNNNTGG 1 cut(s) 866
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 1 cut(s) 450
XceI RCATGY 4 cut(s) 478, 701, 740, 754
XcmI CCANNNNNNNNNTGG 2 cut(s) 767, 906
XmnI GAANNNNTTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.