Rh1AG298600
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000357
Physical Location & Seq
Reverse (-)
53015860 .. 53016454
595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG298600.1

Sequence Viewer

Length: 390 bp
ATGCAGCTGGTGACTTCCACTGCGCTGTCCATGTCCACGCAATTAGCAGTTGAGCTTGGAGTTTTCGACATCATAGCCAAAGCTGGTGCGGGTGCGGGTCTCTCCTCATCGCAGATAGCAGCTCAGATAGGCACCGAGAACCCCGATGCGCCCATGATGTTGGATCGGATCCTCAGGCTACTGGCAAGTCACTCTGTGCTCAATTGCACTGTGGTTAATGCTAATGATGATGATCATAGTGATGGGCCTAATTTTCAGAGGGTTTATAGTCTTGCTCCTGTGTCCAAGTACTTTGTGAAGAGTGATGAAGATGGTGTTTCTTTAGGCGCCATGATGGCATTGATTCAAGACAAGGTCTTCTTGGACAGCTGGTTTGTTTTCTCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

129

Amino Acids

13.76

Weight (kDa)

4.41

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 1 - 101 3.4e-19 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 131, 326
AciI CCGC 2 cut(s) 89, 95
AclWI GGATC 3 cut(s) 163, 171, 176
AcyI GRCGYC 1 cut(s) 327
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 1 cut(s) 347
AluBI AGCT 5 cut(s) 7, 55, 83, 122, 369
AluI AGCT 5 cut(s) 7, 55, 83, 122, 369
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 3 cut(s) 163, 171, 176
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 4, 119
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 3 cut(s) 25, 151, 329
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 22
AxyI CCTNAGG 1 cut(s) 173
BamHI GGATCC 1 cut(s) 168
BanI GGYRCC 2 cut(s) 131, 326
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 16, 131
BccI CCATC 3 cut(s) 236, 305, 328
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 2 cut(s) 5, 120
BlsI GCNGC 2 cut(s) 6, 121
BmcAI AGTACT 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 3 cut(s) 133, 170, 328
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 186
Bse21I CCTNAGG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 231
BseMII CTCAG 2 cut(s) 137, 187
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 16, 131
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 2 cut(s) 131, 326
BsiHKAI GWGCWC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 163, 168, 232
BspACI CCGC 2 cut(s) 89, 95
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 2 cut(s) 136, 186
BspLI GGNNCC 3 cut(s) 133, 170, 328
BspPI GGATC 3 cut(s) 163, 171, 176
BspT107I GGYRCC 2 cut(s) 131, 326
BspTNI GGTCTC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 186
BssMI GATC 3 cut(s) 163, 168, 232
BssNI GRCGYC 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 123, 173
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 3 cut(s) 25, 151, 329
BstKTI GATC 3 cut(s) 166, 171, 235
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 3 cut(s) 163, 168, 232
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 16, 131
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 247
BtgZI GCGATG 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 207
CfoI GCGC 3 cut(s) 25, 151, 329
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 289
CviAII CATG 3 cut(s) 31, 154, 331
CviJI RGCY 8 cut(s) 7, 55, 77, 83, 122, 178, 247, 369
CviKI_1 RGCY 8 cut(s) 7, 55, 77, 83, 122, 178, 247, 369
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 123, 173
DinI GGCGCC 1 cut(s) 328
DpnI GATC 3 cut(s) 165, 170, 234
DpnII GATC 3 cut(s) 163, 168, 232
DraIII CACNNNGTG 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco31I GGTCTC 1 cut(s) 104
Eco81I CCTNAGG 1 cut(s) 173
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
FaeI CATG 3 cut(s) 34, 157, 334
FaiI YATR 6 cut(s) 32, 74, 155, 237, 267, 332
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 3 cut(s) 30, 153, 330
FauI CCCGC 2 cut(s) 82, 88
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 5, 120
Fsp4HI GCNGC 2 cut(s) 5, 120
GlaI GCGC 3 cut(s) 24, 150, 328
GluI GCNGC 2 cut(s) 5, 120
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 1 cut(s) 247
HhaI GCGC 3 cut(s) 25, 151, 329
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 3 cut(s) 34, 157, 334
Hin6I GCGC 3 cut(s) 23, 149, 327
HinP1I GCGC 3 cut(s) 23, 149, 327
HinfI GANTC 1 cut(s) 343
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 126, 168, 258
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 4, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 123, 173
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 3 cut(s) 34, 157, 334
HspAI GCGC 3 cut(s) 23, 149, 327
KasI GGCGCC 1 cut(s) 326
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 163, 168, 232
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 69, 160, 167, 291, 355
Lsp1109I GCAGC 2 cut(s) 16, 131
LweI GCATC 1 cut(s) 136
MaeIII GTNAC 2 cut(s) 10, 188
MalI GATC 3 cut(s) 165, 170, 234
MboI GATC 3 cut(s) 163, 168, 232
MboII GAAGA 3 cut(s) 310, 320, 349
MfeI CAATTG 1 cut(s) 202
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 3 cut(s) 41, 202, 250
Mly113I GGCGCC 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 115, 182, 252
MseI TTAA 2 cut(s) 216, 388
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 7, 369
MunI CAATTG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 335
NarI GGCGCC 1 cut(s) 327
NdeII GATC 3 cut(s) 163, 168, 232
NlaIII CATG 3 cut(s) 34, 157, 334
NlaIV GGNNCC 3 cut(s) 133, 170, 328
NmuCI GTSAC 2 cut(s) 10, 188
PfeI GAWTC 1 cut(s) 343
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 2 cut(s) 6, 121
PluTI GGCGCC 1 cut(s) 330
PspN4I GGNNCC 3 cut(s) 133, 170, 328
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 168
PsyI GACNNNGTC 1 cut(s) 353
PvuII CAGCTG 2 cut(s) 7, 369
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 2 cut(s) 216, 388
SatI GCNGC 2 cut(s) 5, 120
Sau3AI GATC 3 cut(s) 163, 168, 232
Sau96I GGNCC 1 cut(s) 245
ScaI AGTACT 1 cut(s) 290
SduI GDGCHC 1 cut(s) 201
SetI ASST 6 cut(s) 9, 57, 85, 124, 357, 371
SfaNI GCATC 1 cut(s) 136
SfoI GGCGCC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 3 cut(s) 41, 202, 250
SsiI CCGC 2 cut(s) 89, 95
SspDI GGCGCC 1 cut(s) 326
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 66
TasI AATT 3 cut(s) 41, 202, 250
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 216, 388
Tru9I TTAA 2 cut(s) 216, 388
TscAI CASTG 2 cut(s) 25, 214
TseFI GTSAC 2 cut(s) 10, 188
TseI GCWGC 2 cut(s) 4, 119
Tsp45I GTSAC 2 cut(s) 10, 188
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 2 cut(s) 25, 214
Tth111I GACNNNGTC 1 cut(s) 353
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.