pycom01g11440
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000357
Physical Location & Seq
Reverse (-)
12447143 .. 12448492
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11440.3

Sequence Viewer

Length: 705 bp
ATGGTTCAAGACGAGGCCTTCTTAAAAGGCTGGCGTCAGGTGAAAGATGCAGTTATTGAAGGAGGAATTGCATTTGACAGAGCTCATGGCATGCACCACTTTCAGTATCCAAGTGTCGACCATAGGTTTAATAAAATATTCAACAAGGCAATGTTCAACCATAGCACCATAGTTATGAAGAGAATTCTCAAGCTCTACAAAGGTTTTGAGCACGTTACGCAGCTTGTTGATGTTGGTGGTAATTTGGGAGGGGCAATTAGTCTAATCACCTCTAAATATCCACATATTAAGGACATCAATTTTGACTTACCTCATGTTATAAAACATGCCTCCTCTTATCCTGGTGTTGAAAATGTAGGAGGAGACATGTTTGAAAGTATTCCAAATGGGGATGCCATTTTCTTGAAGCACATACTTCATGACTGGTTGGATAAAGACTGCATAAAGTTATTGAAAAATTGTTACAATGCAATTCCAGACAATGGAAAAGTGATCGTGGTGGAGGCACTTCTCCCAATTAAGCCAGATTCTAACCTATCTGTGAGGACCAACGGCCAACTTGATCTGCATATGATGACTCAAGCCCCGGGAGGGATGGAGAGGAGCCAAGAAGAATTCATGGCCTTAGCAACTGCTGCTGGATTTAGTGGCATCGGATATGAATGTTTCACTGCTAATCTTTGGATCATGGAATTCTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

235

Amino Acids

26.29

Weight (kDa)

6.45

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AccB7I CCANNNNNTGG 1 cut(s) 482
AccI GTMKAC 1 cut(s) 117
AclWI GGATC 1 cut(s) 692
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 3 cut(s) 183, 614, 692
AcyI GRCGYC 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 482, 591
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 8 cut(s) 8, 59, 142, 157, 350, 374, 406, 454
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 3 cut(s) 83, 193, 223
AluI AGCT 3 cut(s) 83, 193, 223
Alw21I GWGCWC 2 cut(s) 85, 213
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 1 cut(s) 692
Ama87I CYCGRG 1 cut(s) 586
AoxI GGCC 3 cut(s) 15, 553, 621
ApeKI GCWGC 2 cut(s) 220, 635
ApoI RAATTY 3 cut(s) 183, 614, 692
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp700I GAANNNNTTC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 546
AsuC2I CCSGG 2 cut(s) 587, 588
AsuHPI GGTGA 2 cut(s) 52, 259
AvaI CYCGRG 1 cut(s) 586
AvaII GGWCC 1 cut(s) 546
BanII GRGCYC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 85, 213
BbvI GCAGC 2 cut(s) 232, 622
BccI CCATC 1 cut(s) 589
BceAI ACGGC 1 cut(s) 568
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 1 cut(s) 117
BcnI CCSGG 2 cut(s) 587, 588
BcoDI GTCTC 1 cut(s) 357
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 2 cut(s) 221, 636
BlsI GCNGC 2 cut(s) 222, 637
Bme1390I CCNGG 3 cut(s) 342, 587, 588
Bme18I GGWCC 1 cut(s) 546
BmeT110I CYCGRG 1 cut(s) 586
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 1 cut(s) 605
BmrFI CCNGG 3 cut(s) 342, 587, 588
BmsI GCATC 3 cut(s) 37, 382, 660
Bpu10I CCTNAGC 1 cut(s) 625
BpuEI CTTGAG 2 cut(s) 173, 564
BpuMI CCSGG 2 cut(s) 587, 588
BsaHI GRCGYC 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 585, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 482, 591
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 585, 586
BseGI GGATG 2 cut(s) 397, 600
BseLI CCNNNNNNNGG 2 cut(s) 482, 591
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 3 cut(s) 322, 375, 616
BseXI GCAGC 2 cut(s) 232, 622
BshFI GGCC 3 cut(s) 17, 555, 623
BsiHKAI GWGCWC 2 cut(s) 85, 213
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 1 cut(s) 587
BslI CCNNNNNNNGG 2 cut(s) 482, 591
BsmAI GTCTC 1 cut(s) 357
BsnI GGCC 3 cut(s) 17, 555, 623
BsoBI CYCGRG 1 cut(s) 586
Bsp1286I GDGCHC 2 cut(s) 85, 213
Bsp143I GATC 3 cut(s) 492, 562, 684
BspANI GGCC 3 cut(s) 17, 555, 623
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 605
BspPI GGATC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 585, 586
BssMI GATC 3 cut(s) 492, 562, 684
BssNI GRCGYC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 34
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 32, 92
BstDEI CTNAG 1 cut(s) 625
BstF5I GGATG 2 cut(s) 397, 600
BstKTI GATC 3 cut(s) 495, 565, 687
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 3 cut(s) 492, 562, 684
BstMWI GCNNNNNNNGC 2 cut(s) 217, 635
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 3 cut(s) 94, 329, 370
BstSCI CCNGG 3 cut(s) 340, 585, 586
BstV1I GCAGC 2 cut(s) 232, 622
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 3 cut(s) 17, 555, 623
BtsCI GGATG 2 cut(s) 397, 600
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 2 cut(s) 32, 92
CciI TCATGA 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 546
Cfr9I CCCGGG 1 cut(s) 586
CseI GACGC 1 cut(s) 23
CviAII CATG 8 cut(s) 86, 91, 314, 326, 367, 419, 619, 688
DdeI CTNAG 1 cut(s) 625
DpnI GATC 3 cut(s) 494, 564, 686
DpnII GATC 3 cut(s) 492, 562, 684
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 83
Eco147I AGGCCT 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 546
Eco53kI GAGCTC 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 83
EcoRI GAATTC 3 cut(s) 183, 614, 692
EcoRII CCWGG 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 8 cut(s) 89, 94, 317, 329, 370, 422, 622, 691
FatI CATG 8 cut(s) 85, 90, 313, 325, 366, 418, 618, 687
FauNDI CATATG 1 cut(s) 570
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 221, 636
FokI GGATG 2 cut(s) 404, 607
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 221, 636
GluI GCNGC 2 cut(s) 221, 636
HaeIII GGCC 3 cut(s) 17, 555, 623
HapII CCGG 1 cut(s) 587
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 34
Hin1II CATG 8 cut(s) 89, 94, 317, 329, 370, 422, 622, 691
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 2 cut(s) 527, 577
HpaII CCGG 1 cut(s) 587
HphI GGTGA 2 cut(s) 52, 259
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 656
Hpy188III TCNNGA 4 cut(s) 8, 403, 419, 476
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 28, 53
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 6 cut(s) 50, 71, 94, 441, 470, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 635
HpyF3I CTNAG 1 cut(s) 625
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 34
Hsp92II CATG 8 cut(s) 89, 94, 317, 329, 370, 422, 622, 691
Kzo9I GATC 3 cut(s) 492, 562, 684
LmnI GCTCC 1 cut(s) 603
LpnPI CCDG 9 cut(s) 16, 23, 327, 354, 409, 489, 537, 600, 624
Lsp1109I GCAGC 2 cut(s) 232, 622
LweI GCATC 3 cut(s) 37, 382, 660
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 214, 461
MalI GATC 3 cut(s) 494, 564, 686
MboI GATC 3 cut(s) 492, 562, 684
MboII GAAGA 2 cut(s) 190, 623
MhlI GDGCHC 2 cut(s) 85, 213
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 4 cut(s) 23, 129, 288, 519
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 3 cut(s) 342, 587, 588
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 217, 635
NciI CCSGG 2 cut(s) 587, 588
NdeI CATATG 1 cut(s) 570
NdeII GATC 3 cut(s) 492, 562, 684
NlaIII CATG 8 cut(s) 89, 94, 317, 329, 370, 422, 622, 691
NlaIV GGNNCC 1 cut(s) 605
NspI RCATGY 3 cut(s) 94, 329, 370
PaeI GCATGC 1 cut(s) 94
PagI TCATGA 1 cut(s) 418
PceI AGGCCT 1 cut(s) 17
PciI ACATGT 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 527
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 2 cut(s) 222, 637
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
PscI ACATGT 1 cut(s) 366
PsiI TTATAA 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 605
PspPI GGNCC 1 cut(s) 546
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 85
SalI GTCGAC 1 cut(s) 116
SaqAI TTAA 4 cut(s) 23, 129, 288, 519
SatI GCNGC 2 cut(s) 221, 636
Sau3AI GATC 3 cut(s) 492, 562, 684
Sau96I GGNCC 1 cut(s) 546
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 3 cut(s) 342, 587, 588
SduI GDGCHC 2 cut(s) 85, 213
SfaNI GCATC 3 cut(s) 37, 382, 660
SinI GGWCC 1 cut(s) 546
SmaI CCCGGG 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 188, 579
SmoI CTYRAG 2 cut(s) 188, 579
SphI GCATGC 1 cut(s) 94
SseBI AGGCCT 1 cut(s) 17
SspI AATATT 1 cut(s) 138
SstI GAGCTC 1 cut(s) 85
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 3 cut(s) 340, 585, 586
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 117
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 4 cut(s) 23, 129, 288, 519
Tru9I TTAA 4 cut(s) 23, 129, 288, 519
TscAI CASTG 1 cut(s) 676
TseI GCWGC 2 cut(s) 220, 635
TspDTI ATGAA 4 cut(s) 191, 407, 607, 675
TspMI CCCGGG 1 cut(s) 586
TspRI CASTG 1 cut(s) 676
Van91I CCANNNNNTGG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 546
XapI RAATTY 3 cut(s) 183, 614, 692
XceI RCATGY 3 cut(s) 94, 329, 370
XmaI CCCGGG 1 cut(s) 586
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.