Rroxscaffold_4G00289300
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000357
Physical Location & Seq
Reverse (-)
9945506 .. 9947674
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289300.1

Sequence Viewer

Length: 708 bp
ATGGCTTTGAATCAAGACAAGGTCTTATTGGACAGCTGGTTCCAGTTGAAAGGTGCTGTTGTGGAAGGAGGAATCCCATTTAACAGGGTCTATGGCACACATCTCTATGAGTATCCAGGTTTGGACGCCAGGTTTAACCAATTGTTCAACACAGCAATGTTCGACCACACCACTATTGTTATCAAGAAAATTCTTGATCTCTACAAGGGTTTTGAGCACCTTAAGCAACTTGTTGATGTTGGGGGTGGCGTTGGAGTGACTCTTAGCCTAATCACTTCTAGATATCCTGATATTAAGGGCATCAACTTTGACTTGCCTCATGTCATCAAAGATGCCCCTTCTTACACTGGAGTGGACCATGTAGGAGGAGACATGTTCGCAAGTGTTCCAAGTGGGGATGCCATTTTTATGAAGTGGATACTTCATAACTGGAGTGATGAGCGCTGCTTGACGATCCTGAAAAATTGTTACAGTGCTATACCAGACAATGGAAAAGTAATTGTTGTGGAAGAACTTCTTCCAGTTGTGCCAGAGACCAGCACTACTGTGAAGAGCACCTCGCAAATGGATGTGCTTATGATGACATATTGCCAGGGAGGGAAAGAGCGAAGTGAACAAGAATTCCTAGCCTTGGCAATTGCTGCTGGGTTTTGCGGCATCAGATATGAATGTTTTGTTTGTAATTTTTGGGTTATGGAGTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

235

Amino Acids

26.33

Weight (kDa)

5.19

Isoelectric Point (pI)

20.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 13 - 217 4.4e-64 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 488
AciI CCGC 1 cut(s) 654
AclWI GGATC 1 cut(s) 448
AcsI RAATTY 2 cut(s) 189, 620
AcyI GRCGYC 1 cut(s) 126
AfeI AGCGCT 1 cut(s) 443
AfiI CCNNNNNNNGG 2 cut(s) 488, 631
AflII CTTAAG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 3 cut(s) 10, 49, 148
AjnI CCWGG 3 cut(s) 115, 128, 591
AleI CACNNNNGTG 2 cut(s) 350, 545
AloI GAACNNNNNNTCC 4 cut(s) 23, 55, 606, 638
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 2 cut(s) 219, 557
Alw26I GTCTC 2 cut(s) 363, 527
AlwI GGATC 1 cut(s) 448
Aor51HI AGCGCT 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 444, 641
ApoI RAATTY 2 cut(s) 189, 620
Asp700I GAANNNNTTC 2 cut(s) 513, 516
AspLEI GCGC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 355
AvaII GGWCC 1 cut(s) 355
Bbv12I GWGCWC 2 cut(s) 219, 557
BbvI GCAGC 2 cut(s) 431, 628
BciT130I CCWGG 3 cut(s) 117, 130, 593
BciVI GTATCC 2 cut(s) 123, 411
BcoDI GTCTC 2 cut(s) 363, 527
BfaI CTAG 2 cut(s) 279, 626
BfoI RGCGCY 1 cut(s) 445
BfrI CTTAAG 1 cut(s) 221
BfuI GTATCC 2 cut(s) 123, 411
BisI GCNGC 3 cut(s) 445, 642, 655
BlsI GCNGC 3 cut(s) 446, 643, 656
Bme1390I CCNGG 3 cut(s) 117, 130, 593
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 3 cut(s) 117, 130, 593
BmsI GCATC 4 cut(s) 309, 322, 388, 666
BpmI CTGGAG 2 cut(s) 369, 451
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 592, 630
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 631
Bse1I ACTGG 4 cut(s) 43, 352, 434, 521
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 3 cut(s) 117, 130, 593
BseDI CCNNGG 2 cut(s) 592, 630
BseGI GGATG 2 cut(s) 403, 574
BseLI CCNNNNNNNGG 2 cut(s) 488, 631
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 4 cut(s) 43, 352, 434, 521
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 2 cut(s) 431, 628
BseYI CCCAGC 1 cut(s) 644
BsiHKAI GWGCWC 2 cut(s) 219, 557
BslI CCNNNNNNNGG 2 cut(s) 488, 631
BsmAI GTCTC 2 cut(s) 363, 527
Bso31I GGTCTC 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 219, 557
Bsp143I GATC 2 cut(s) 196, 453
BspACI CCGC 1 cut(s) 654
BspLI GGNNCC 1 cut(s) 41
BspPI GGATC 1 cut(s) 448
BspQI GCTCTTC 1 cut(s) 545
BspTI CTTAAG 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 4 cut(s) 43, 352, 434, 521
BssECI CCNNGG 2 cut(s) 592, 630
BssMI GATC 2 cut(s) 196, 453
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 630
Bst2UI CCWGG 3 cut(s) 117, 130, 593
Bst4CI ACNGT 2 cut(s) 473, 547
Bst6I CTCTTC 1 cut(s) 545
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 221
BstAPI GCANNNNNTGC 1 cut(s) 641
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 403, 574
BstH2I RGCGCY 1 cut(s) 445
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 2 cut(s) 199, 456
BstMAI GTCTC 2 cut(s) 363, 527
BstMBI GATC 2 cut(s) 196, 453
BstMWI GCNNNNNNNGC 2 cut(s) 223, 641
BstNI CCWGG 3 cut(s) 117, 130, 593
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 115, 128, 591
BstV1I GCAGC 2 cut(s) 431, 628
BsuI GTATCC 2 cut(s) 123, 411
BtsCI GGATG 2 cut(s) 403, 574
BtsIMutI CAGTG 2 cut(s) 345, 478
CfoI GCGC 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 355
CseI GACGC 1 cut(s) 134
CviAII CATG 3 cut(s) 320, 359, 373
CviJI RGCY 4 cut(s) 5, 36, 267, 629
CviKI_1 RGCY 4 cut(s) 5, 36, 267, 629
DdeI CTNAG 1 cut(s) 263
DpnI GATC 2 cut(s) 198, 455
DpnII GATC 2 cut(s) 196, 453
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 527
Eco32I GATATC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 355
Eco47III AGCGCT 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 3 cut(s) 115, 128, 591
EcoRV GATATC 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 3 cut(s) 323, 362, 376
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 3 cut(s) 319, 358, 372
Fnu4HI GCNGC 3 cut(s) 445, 642, 655
FokI GGATG 2 cut(s) 410, 581
Fsp4HI GCNGC 3 cut(s) 445, 642, 655
FspBI CTAG 2 cut(s) 279, 626
GlaI GCGC 1 cut(s) 443
GluI GCNGC 3 cut(s) 445, 642, 655
GsaI CCCAGC 1 cut(s) 648
GsuI CTGGAG 2 cut(s) 369, 451
HaeII RGCGCY 1 cut(s) 445
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 444
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 323, 362, 376
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HinfI GANTC 3 cut(s) 10, 72, 259
Hpy166II GTNNAC 2 cut(s) 355, 614
Hpy188I TCNGA 1 cut(s) 662
Hpy188III TCNNGA 6 cut(s) 14, 184, 194, 279, 287, 457
Hpy8I GTNNAC 2 cut(s) 355, 614
HpyAV CCTTC 2 cut(s) 59, 348
HpyCH4III ACNGT 2 cut(s) 473, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 641
HpyF3I CTNAG 1 cut(s) 263
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 323, 362, 376
HspAI GCGC 1 cut(s) 442
Kzo9I GATC 2 cut(s) 196, 453
LguI GCTCTTC 1 cut(s) 545
Lsp1109I GCAGC 2 cut(s) 431, 628
LweI GCATC 4 cut(s) 309, 322, 388, 666
MaeI CTAG 2 cut(s) 279, 626
MaeIII GTNAC 2 cut(s) 256, 467
MalI GATC 2 cut(s) 198, 455
MboI GATC 2 cut(s) 196, 453
MboII GAAGA 3 cut(s) 509, 521, 562
MfeI CAATTG 2 cut(s) 140, 636
MhlI GDGCHC 2 cut(s) 219, 557
MluCI AATT 7 cut(s) 140, 189, 463, 498, 620, 636, 682
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 5 cut(s) 62, 327, 359, 568, 590
MroXI GAANNNNTTC 2 cut(s) 513, 516
MseI TTAA 5 cut(s) 81, 135, 222, 294, 706
MslI CAYNNNNRTG 5 cut(s) 105, 155, 350, 407, 545
MspA1I CMGCKG 1 cut(s) 36
MspCI CTTAAG 1 cut(s) 221
MspR9I CCNGG 3 cut(s) 117, 130, 593
MunI CAATTG 2 cut(s) 140, 636
MvaI CCWGG 3 cut(s) 117, 130, 593
MwoI GCNNNNNNNGC 2 cut(s) 223, 641
NdeII GATC 2 cut(s) 196, 453
NlaIII CATG 3 cut(s) 323, 362, 376
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 376
OliI CACNNNNGTG 2 cut(s) 350, 545
PciI ACATGT 1 cut(s) 372
PciSI GCTCTTC 1 cut(s) 545
PdmI GAANNNNTTC 2 cut(s) 513, 516
PfeI GAWTC 2 cut(s) 10, 72
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 488
PkrI GCNGC 3 cut(s) 446, 643, 656
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PscI ACATGT 1 cut(s) 372
Psp6I CCWGG 3 cut(s) 115, 128, 591
PspFI CCCAGC 1 cut(s) 644
PspGI CCWGG 3 cut(s) 115, 128, 591
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 355
PsyI GACNNNGTC 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 36
RseI CAYNNNNRTG 5 cut(s) 105, 155, 350, 407, 545
SapI GCTCTTC 1 cut(s) 545
SaqAI TTAA 5 cut(s) 81, 135, 222, 294, 706
SatI GCNGC 3 cut(s) 445, 642, 655
Sau3AI GATC 2 cut(s) 196, 453
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 3 cut(s) 117, 130, 593
SduI GDGCHC 2 cut(s) 219, 557
SetI ASST 7 cut(s) 24, 38, 55, 121, 134, 222, 560
SfaNI GCATC 4 cut(s) 309, 322, 388, 666
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 5 cut(s) 105, 155, 350, 407, 545
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 7 cut(s) 140, 189, 463, 498, 620, 636, 682
SsiI CCGC 1 cut(s) 654
SspMI CTAG 2 cut(s) 279, 626
StyD4I CCNGG 3 cut(s) 115, 128, 591
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 2 cut(s) 473, 547
TaqI TCGA 1 cut(s) 162
TasI AATT 7 cut(s) 140, 189, 463, 498, 620, 636, 682
TauI GCSGC 1 cut(s) 657
TfiI GAWTC 2 cut(s) 10, 72
Tru1I TTAA 5 cut(s) 81, 135, 222, 294, 706
Tru9I TTAA 5 cut(s) 81, 135, 222, 294, 706
TscAI CASTG 2 cut(s) 352, 478
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 444, 641
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 413, 425, 681
TspRI CASTG 2 cut(s) 352, 478
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 488
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 2 cut(s) 189, 620
XbaI TCTAGA 1 cut(s) 278
XceI RCATGY 1 cut(s) 376
XmnI GAANNNNTTC 2 cut(s) 513, 516
XspI CTAG 2 cut(s) 279, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.