Rh1BG262800

Dimerisation domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000357
Physical Location & Seq
Reverse (-)
39586728 .. 39587201
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG262800.1

Sequence Viewer

Length: 474 bp
ATGGCCTCTTCACTGGAAACAAAACCCAAAGCTATAGTTCTTGACGATGAAAGAAAGCAAGAAGAAGAAAGCTTTCATTTTGCTGTGCAGCTGGTGGTTTCATCTGCGCTGCCCATGTCCATGCAATCAGCCATTGAGCTCGGACTTTTTGATATCATAGCCAGAGCAGGTTCGGGTGCGGGGCTCTCTGCACCCCAGATTGCTGCCCAGATTGGCACCCAGAATCCTGAGGCAGCCTTTATGCTGGATCGAATCCTTAGGCTCCTCGCCACTCACTCTGTACTTGGTTGCTCTCTGGTTGATGGCCAAAGGCTCTACAGGCTCTCCGCGGTGTCCAAGCACTTTGTGACTGAAGATGGCGTTTCGCTGGGCTTCGTCATGGCATTGTTCCAAGACAAGGTCTTCATAAACAGTTGGTATGTTCTCATCACTTCACGTACGTTCGAATTTAAGCTTTTGGAGTTAATTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation

Protein Analysis

157

Amino Acids

17.25

Weight (kDa)

5.58

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 30 - 117 4.9e-19 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 215
AccII CGCG 1 cut(s) 329
AciI CCGC 3 cut(s) 179, 327, 329
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 372
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 2 cut(s) 282, 439
AfiI CCNNNNNNNGG 1 cut(s) 397
AluBI AGCT 5 cut(s) 32, 72, 91, 139, 454
AluI AGCT 5 cut(s) 32, 72, 91, 139, 454
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 1 cut(s) 255
AoxI GGCC 2 cut(s) 3, 304
ApeKI GCWGC 4 cut(s) 88, 109, 203, 233
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 444
AxyI CCTNAGG 2 cut(s) 228, 257
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 2 cut(s) 141, 186
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 4 cut(s) 96, 100, 190, 245
BccI CCATC 2 cut(s) 296, 350
BfmI CTRYAG 2 cut(s) 33, 316
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 4 cut(s) 89, 110, 204, 234
BlsI GCNGC 4 cut(s) 90, 111, 205, 235
BmiI GGNNCC 2 cut(s) 217, 263
BpiI GAAGAC 1 cut(s) 394
Bpu14I TTCGAA 1 cut(s) 444
BsaAI YACGTR 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 18
Bse21I CCTNAGG 2 cut(s) 228, 257
BseDI CCNNGG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 4 cut(s) 96, 100, 190, 245
BseYI CCCAGC 1 cut(s) 367
BsgI GTGCAG 2 cut(s) 107, 174
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 5, 306
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 141
BsiWI CGTACG 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 397
BsnI GGCC 2 cut(s) 5, 306
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 141, 186
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 3 cut(s) 179, 327, 329
BspANI GGCC 2 cut(s) 5, 306
BspCNI CTCAG 1 cut(s) 220
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 2 cut(s) 217, 263
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 444
BstDEI CTNAG 2 cut(s) 228, 257
BstDSI CCRYGG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstSFI CTRYAG 2 cut(s) 33, 316
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 4 cut(s) 96, 100, 190, 245
BstV2I GAAGAC 1 cut(s) 394
Bsu36I CCTNAGG 2 cut(s) 228, 257
BsuRI GGCC 2 cut(s) 5, 306
BtgI CCRYGG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 109
Cfr42I CCGCGG 1 cut(s) 330
Csp6I GTAC 2 cut(s) 281, 438
CviAII CATG 3 cut(s) 115, 121, 379
CviQI GTAC 2 cut(s) 281, 438
DdeI CTNAG 2 cut(s) 228, 257
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
DraIII CACNNNGTG 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 2 cut(s) 141, 186
Eco32I GATATC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 372
Eco81I CCTNAGG 2 cut(s) 228, 257
EcoICRI GAGCTC 1 cut(s) 139
EcoRV GATATC 1 cut(s) 154
EcoT38I GRGCYC 2 cut(s) 141, 186
FaeI CATG 3 cut(s) 118, 124, 382
FaiI YATR 8 cut(s) 35, 116, 122, 158, 242, 380, 407, 420
FatI CATG 3 cut(s) 114, 120, 378
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 89, 110, 204, 234
FriOI GRGCYC 2 cut(s) 141, 186
Fsp4HI GCNGC 4 cut(s) 89, 110, 204, 234
GlaI GCGC 1 cut(s) 108
GluI GCNGC 4 cut(s) 89, 110, 204, 234
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 2 cut(s) 5, 306
HhaI GCGC 1 cut(s) 109
Hin1II CATG 3 cut(s) 118, 124, 382
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 2 cut(s) 70, 452
HinfI GANTC 2 cut(s) 223, 252
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 2 cut(s) 41, 227
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 2 cut(s) 436, 440
HpyCH4V TGCA 3 cut(s) 88, 124, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 2 cut(s) 228, 257
HpySE526I ACGT 2 cut(s) 436, 440
Hsp92II CATG 3 cut(s) 118, 124, 382
HspAI GCGC 1 cut(s) 107
KspI CCGCGG 1 cut(s) 330
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 267
Lsp1109I GCAGC 4 cut(s) 96, 100, 190, 245
MaeII ACGT 2 cut(s) 436, 440
MaeIII GTNAC 1 cut(s) 346
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 4 cut(s) 74, 77, 365, 394
MhlI GDGCHC 2 cut(s) 141, 186
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 2 cut(s) 446, 465
MluNI TGGCCA 1 cut(s) 306
MnlI CCTC 3 cut(s) 16, 223, 275
Mox20I TGGCCA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 72
MscI TGGCCA 1 cut(s) 306
MseI TTAA 3 cut(s) 450, 464, 468
MslI CAYNNNNRTG 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 2 cut(s) 91, 329
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 319
NdeII GATC 1 cut(s) 247
NlaIII CATG 3 cut(s) 118, 124, 382
NlaIV GGNNCC 2 cut(s) 217, 263
NmuCI GTSAC 1 cut(s) 346
NspV TTCGAA 1 cut(s) 444
PacI TTAATTAA 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 223, 252
Pfl23II CGTACG 1 cut(s) 437
PflFI GACNNNGTC 1 cut(s) 398
PkrI GCNGC 4 cut(s) 90, 111, 205, 235
Ppu21I YACGTR 1 cut(s) 437
Psp124BI GAGCTC 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 367
PspLI CGTACG 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 217, 263
PsyI GACNNNGTC 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 2 cut(s) 282, 439
RsaNI GTAC 2 cut(s) 281, 438
RseI CAYNNNNRTG 1 cut(s) 119
SacI GAGCTC 1 cut(s) 141
SacII CCGCGG 1 cut(s) 330
SaqAI TTAA 3 cut(s) 450, 464, 468
SatI GCNGC 4 cut(s) 89, 110, 204, 234
Sau3AI GATC 1 cut(s) 247
SduI GDGCHC 2 cut(s) 141, 186
SetI ASST 9 cut(s) 34, 74, 93, 141, 172, 402, 439, 443, 456
SfcI CTRYAG 2 cut(s) 33, 316
Sfr303I CCGCGG 1 cut(s) 330
SfuI TTCGAA 1 cut(s) 444
SgrBI CCGCGG 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 2 cut(s) 446, 465
SsiI CCGC 3 cut(s) 179, 327, 329
SstI GAGCTC 1 cut(s) 141
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 2 cut(s) 439, 443
TaqI TCGA 2 cut(s) 250, 444
TasI AATT 2 cut(s) 446, 465
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 2 cut(s) 223, 252
Tru1I TTAA 3 cut(s) 450, 464, 468
Tru9I TTAA 3 cut(s) 450, 464, 468
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 88, 109, 203, 233
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 63, 65, 90, 394
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 398
XapI RAATTY 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.