pycom01g11400
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
12405574 .. 12407627
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11400.2

Sequence Viewer

Length: 1152 bp
ATGGTGTTCATCTTAGCTAGATGCACAAGCACTAATCCAATGGCTTCTCTAGAGGAACCAAAAGGCCTTCCTGACATTCCTCTTGATGATGAAGCAAGGAAAGAAGAAGAGAGCTACTGCCATGCACTGCAGCTGGTGGTTTCTTCAGTGCTGTCCTTCTCCATGCAGTCAGCAATTGAGCTTGGCGTTTTTGACATCATAGCAAAAGAGGGTCCAAATGCCAAGCTCTCTTCATCTGAGATCGCTGCTCACGTCGGAACCAAGACCCCTGACGGACCCATGATGCTAGATCGCCTTCTAGCTGTCCTGGCCAGCAACTCCGTGCTCGACTGCACAGTTGTTAACGGTAAACTTGACAAGTGTTTCCGGAGGCTCTACAGCCTTAACCCTGTGTCCAAGCACTTTGTGACTAATGAAGATGGTGTTTCCTTAGCCCCTGTGTTGACTATGGTTCAAGACGAGGCCTTCATAAAAGGCTGGCGTAAGGTGAAAGATGCAGTTATTGAAGGAGGAATTGCATTTGACAGAGCTCATGGCATGCACCACTTTCAGTATCCAAGTGTCGACCATAGGTTTAATGAAATATTCAACAAGGCAATGTTCAACCATAGCACCCTAATTATGAAGAGAATTCTCAAGCTCTACAAAGGTTTTGAGCATGTTACGCAGCTTGTTGATGTTGGTGGTAATTTGGGAGGGGCAATTAGTCTAATCACTTCTAAATATCCACATATTAAGGGCATCAATTTTGACTTACCTCATGTTATAAAACATGCCTCCTCTTATCCTGGTGTTGAACATGTAGGAGGAGACATGTTTGAAAGTATTCCAAATGGGGATGCCATTTTTTTGAAGTACATACTTCATGACTGGTTGGATAAAGACTGCATAAAGCTATTGAAAAATTGTTACAATGCAATTCCAGACAATGGAAAAGTGATCGTGGTGGAGGCACTTCTCCCAATTAAGCCAGATTCTAACCTATCTGTGAGGACCAACGGCCAACTTGATCTGCATATGATGACTCAAACCCCTGGAGGGATGGAGAGGAGCCAAGAAGAATTCATGGCCTTAGCAACTGCTGCTGGATTTAGTGGCATCAGATATGAATGTTTCACTGCTAATCTTTGGATCATGGAATTCTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

384

Amino Acids

42.49

Weight (kDa)

6.01

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 767
AccB7I CCANNNNNTGG 1 cut(s) 929
AccI GTMKAC 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 366
AclWI GGATC 1 cut(s) 1139
AcoI YGGCCR 2 cut(s) 309, 1000
AcsI RAATTY 3 cut(s) 630, 1061, 1139
AcuI CTGAAG 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 406
AfaI GTAC 1 cut(s) 857
AfiI CCNNNNNNNGG 2 cut(s) 929, 1038
AflIII ACRYGT 2 cut(s) 799, 813
AgsI TTSAA 8 cut(s) 455, 506, 589, 604, 797, 821, 853, 901
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 3 cut(s) 306, 787, 1033
Alw21I GWGCWC 2 cut(s) 327, 532
Alw26I GTCTC 1 cut(s) 804
AlwI GGATC 1 cut(s) 1139
Aor13HI TCCGGA 1 cut(s) 366
AoxI GGCC 5 cut(s) 64, 309, 462, 1000, 1068
ApeKI GCWGC 4 cut(s) 130, 245, 667, 1082
ApoI RAATTY 3 cut(s) 630, 1061, 1139
Asp700I GAANNNNTTC 1 cut(s) 825
AspS9I GGNCC 3 cut(s) 212, 275, 993
AsuHPI GGTGA 1 cut(s) 499
AvaII GGWCC 3 cut(s) 212, 275, 993
BalI TGGCCA 1 cut(s) 311
BanII GRGCYC 1 cut(s) 532
Bbv12I GWGCWC 2 cut(s) 327, 532
BbvI GCAGC 4 cut(s) 142, 232, 679, 1069
BccI CCATC 2 cut(s) 413, 1036
BceAI ACGGC 1 cut(s) 1015
BciT130I CCWGG 3 cut(s) 308, 789, 1035
BciVI GTATCC 1 cut(s) 564
BcoDI GTCTC 1 cut(s) 804
BfaI CTAG 4 cut(s) 18, 50, 287, 299
BfmI CTRYAG 2 cut(s) 128, 376
BfuI GTATCC 1 cut(s) 564
BisI GCNGC 4 cut(s) 131, 246, 668, 1083
BlsI GCNGC 4 cut(s) 132, 247, 669, 1084
Bme1390I CCNGG 3 cut(s) 308, 789, 1035
Bme18I GGWCC 3 cut(s) 212, 275, 993
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 212, 275, 993
BmiI GGNNCC 5 cut(s) 57, 213, 259, 277, 1052
BmrFI CCNGG 3 cut(s) 308, 789, 1035
BmsI GCATC 6 cut(s) 11, 273, 484, 750, 829, 1107
BpmI CTGGAG 1 cut(s) 1056
Bpu10I CCTNAGC 2 cut(s) 430, 1072
BpuEI CTTGAG 1 cut(s) 620
BsaJI CCNNGG 1 cut(s) 1033
BsaWI WCCGGW 1 cut(s) 366
Bsc4I CCNNNNNNNGG 2 cut(s) 929, 1038
Bse1I ACTGG 1 cut(s) 875
Bse3DI GCAATG 1 cut(s) 603
BseAI TCCGGA 1 cut(s) 366
BseBI CCWGG 3 cut(s) 308, 789, 1035
BseDI CCNNGG 1 cut(s) 1033
BseGI GGATG 2 cut(s) 844, 1047
BseLI CCNNNNNNNGG 2 cut(s) 929, 1038
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 875
BseRI GAGGAG 3 cut(s) 769, 822, 1063
BseXI GCAGC 4 cut(s) 142, 232, 679, 1069
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 5 cut(s) 66, 311, 464, 1002, 1070
BsiHKAI GWGCWC 2 cut(s) 327, 532
BsiSI CCGG 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 929, 1038
BsmAI GTCTC 1 cut(s) 804
BsnI GGCC 5 cut(s) 66, 311, 464, 1002, 1070
Bsp1286I GDGCHC 2 cut(s) 327, 532
Bsp13I TCCGGA 1 cut(s) 366
Bsp143I GATC 5 cut(s) 240, 289, 939, 1009, 1131
BspANI GGCC 5 cut(s) 66, 311, 464, 1002, 1070
BspCNI CTCAG 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 366
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 5 cut(s) 57, 213, 259, 277, 1052
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 1 cut(s) 1139
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 875
BssECI CCNNGG 1 cut(s) 1033
BssMI GATC 5 cut(s) 240, 289, 939, 1009, 1131
Bst2UI CCWGG 3 cut(s) 308, 789, 1035
Bst4CI ACNGT 2 cut(s) 337, 347
Bst6I CTCTTC 3 cut(s) 102, 235, 620
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstC8I GCNNGC 3 cut(s) 313, 479, 539
BstDEI CTNAG 4 cut(s) 13, 237, 430, 1072
BstF5I GGATG 2 cut(s) 844, 1047
BstKTI GATC 5 cut(s) 243, 292, 942, 1012, 1134
BstMAI GTCTC 1 cut(s) 804
BstMBI GATC 5 cut(s) 240, 289, 939, 1009, 1131
BstMWI GCNNNNNNNGC 3 cut(s) 308, 664, 1082
BstNI CCWGG 3 cut(s) 308, 789, 1035
BstNSI RCATGY 5 cut(s) 541, 662, 776, 803, 817
BstSCI CCNGG 3 cut(s) 306, 787, 1033
BstSFI CTRYAG 2 cut(s) 128, 376
BstV1I GCAGC 4 cut(s) 142, 232, 679, 1069
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 5 cut(s) 66, 311, 464, 1002, 1070
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 2 cut(s) 844, 1047
BtsI GCAGTG 2 cut(s) 125, 1116
BtsIMutI CAGTG 3 cut(s) 125, 153, 1116
Cac8I GCNNGC 3 cut(s) 313, 479, 539
CciI TCATGA 1 cut(s) 865
Cfr13I GGNCC 3 cut(s) 212, 275, 993
Csp6I GTAC 1 cut(s) 856
CviQI GTAC 1 cut(s) 856
DdeI CTNAG 4 cut(s) 13, 237, 430, 1072
DpnI GATC 5 cut(s) 242, 291, 941, 1011, 1133
DpnII GATC 5 cut(s) 240, 289, 939, 1009, 1131
DraIII CACNNNGTG 1 cut(s) 406
EaeI YGGCCR 2 cut(s) 309, 1000
Eam1104I CTCTTC 3 cut(s) 102, 235, 620
EarI CTCTTC 3 cut(s) 102, 235, 620
Ecl136II GAGCTC 1 cut(s) 530
Eco147I AGGCCT 2 cut(s) 66, 464
Eco24I GRGCYC 1 cut(s) 532
Eco47I GGWCC 3 cut(s) 212, 275, 993
Eco53kI GAGCTC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 530
EcoRI GAATTC 3 cut(s) 630, 1061, 1139
EcoRII CCWGG 3 cut(s) 306, 787, 1033
EcoT38I GRGCYC 1 cut(s) 532
FauNDI CATATG 1 cut(s) 1017
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 4 cut(s) 131, 246, 668, 1083
FokI GGATG 2 cut(s) 851, 1054
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 4 cut(s) 131, 246, 668, 1083
FspBI CTAG 4 cut(s) 18, 50, 287, 299
GluI GCNGC 4 cut(s) 131, 246, 668, 1083
GsuI CTGGAG 1 cut(s) 1056
HaeIII GGCC 5 cut(s) 66, 311, 464, 1002, 1070
HapII CCGG 1 cut(s) 367
HincII GTYRAC 3 cut(s) 343, 444, 565
HindII GTYRAC 3 cut(s) 343, 444, 565
HinfI GANTC 2 cut(s) 974, 1024
HpaI GTTAAC 1 cut(s) 343
HpaII CCGG 1 cut(s) 367
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 4 cut(s) 343, 350, 444, 565
Hpy188I TCNGA 3 cut(s) 238, 257, 1103
Hpy188III TCNNGA 7 cut(s) 50, 71, 83, 367, 455, 866, 923
Hpy8I GTNNAC 4 cut(s) 343, 350, 444, 565
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 5 cut(s) 77, 166, 305, 475, 500
HpyCH4III ACNGT 2 cut(s) 337, 347
HpyCH4IV ACGT 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 664, 1082
HpyF3I CTNAG 4 cut(s) 13, 237, 430, 1072
HpySE526I ACGT 1 cut(s) 252
Kpn2I TCCGGA 1 cut(s) 366
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 5 cut(s) 240, 289, 939, 1009, 1131
LmnI GCTCC 1 cut(s) 1050
Lsp1109I GCAGC 4 cut(s) 142, 232, 679, 1069
LweI GCATC 6 cut(s) 11, 273, 484, 750, 829, 1107
MaeI CTAG 4 cut(s) 18, 50, 287, 299
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 406, 661, 908
MalI GATC 5 cut(s) 242, 291, 941, 1011, 1133
MboI GATC 5 cut(s) 240, 289, 939, 1009, 1131
MboII GAAGA 7 cut(s) 116, 119, 135, 222, 428, 637, 1070
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 327, 532
MlsI TGGCCA 1 cut(s) 311
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 1018
MmeI TCCRAC 2 cut(s) 235, 855
Mox20I TGGCCA 1 cut(s) 311
MroI TCCGGA 1 cut(s) 366
MroXI GAANNNNTTC 1 cut(s) 825
MscI TGGCCA 1 cut(s) 311
MseI TTAA 5 cut(s) 342, 384, 576, 735, 966
Msp20I TGGCCA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 3 cut(s) 308, 789, 1035
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 3 cut(s) 308, 789, 1035
MwoI GCNNNNNNNGC 3 cut(s) 308, 664, 1082
NdeI CATATG 1 cut(s) 1017
NdeII GATC 5 cut(s) 240, 289, 939, 1009, 1131
NlaIV GGNNCC 5 cut(s) 57, 213, 259, 277, 1052
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 5 cut(s) 541, 662, 776, 803, 817
PaeI GCATGC 1 cut(s) 541
PagI TCATGA 1 cut(s) 865
PceI AGGCCT 2 cut(s) 66, 464
PciI ACATGT 2 cut(s) 799, 813
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 1 cut(s) 974
PflMI CCANNNNNTGG 1 cut(s) 929
PkrI GCNGC 4 cut(s) 132, 247, 669, 1084
PleI GAGTC 1 cut(s) 1018
PpsI GAGTC 1 cut(s) 1018
PscI ACATGT 2 cut(s) 799, 813
PsiI TTATAA 1 cut(s) 767
Psp124BI GAGCTC 1 cut(s) 532
Psp6I CCWGG 3 cut(s) 306, 787, 1033
PspGI CCWGG 3 cut(s) 306, 787, 1033
PspN4I GGNNCC 5 cut(s) 57, 213, 259, 277, 1052
PspPI GGNCC 3 cut(s) 212, 275, 993
PstI CTGCAG 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 1 cut(s) 857
RsaNI GTAC 1 cut(s) 856
SacI GAGCTC 1 cut(s) 532
SalI GTCGAC 1 cut(s) 563
SaqAI TTAA 5 cut(s) 342, 384, 576, 735, 966
SatI GCNGC 4 cut(s) 131, 246, 668, 1083
Sau3AI GATC 5 cut(s) 240, 289, 939, 1009, 1131
Sau96I GGNCC 3 cut(s) 212, 275, 993
SchI GAGTC 1 cut(s) 1018
ScrFI CCNGG 3 cut(s) 308, 789, 1035
SduI GDGCHC 2 cut(s) 327, 532
SfaNI GCATC 6 cut(s) 11, 273, 484, 750, 829, 1107
SfcI CTRYAG 2 cut(s) 128, 376
SinI GGWCC 3 cut(s) 212, 275, 993
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
SphI GCATGC 1 cut(s) 541
SseBI AGGCCT 2 cut(s) 66, 464
SspI AATATT 1 cut(s) 585
SspMI CTAG 4 cut(s) 18, 50, 287, 299
SstI GAGCTC 1 cut(s) 532
StuI AGGCCT 2 cut(s) 66, 464
StyD4I CCNGG 3 cut(s) 306, 787, 1033
TaaI ACNGT 2 cut(s) 337, 347
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 327, 564
TatI WGTACW 1 cut(s) 855
TfiI GAWTC 1 cut(s) 974
Tru1I TTAA 5 cut(s) 342, 384, 576, 735, 966
Tru9I TTAA 5 cut(s) 342, 384, 576, 735, 966
TscAI CASTG 3 cut(s) 132, 153, 1123
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 4 cut(s) 130, 245, 667, 1082
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 9 cut(s) 105, 222, 429, 457, 594, 638, 854, 1054, 1122
TspGWI ACGGA 2 cut(s) 288, 310
TspRI CASTG 3 cut(s) 132, 153, 1123
Van91I CCANNNNNTGG 1 cut(s) 929
VpaK11BI GGWCC 3 cut(s) 212, 275, 993
XapI RAATTY 3 cut(s) 630, 1061, 1139
XbaI TCTAGA 1 cut(s) 49
XceI RCATGY 5 cut(s) 541, 662, 776, 803, 817
XmiI GTMKAC 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 4 cut(s) 18, 50, 287, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.