MD01G1090500.v1.1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
20534313 .. 20536652
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1090500.v1.1.491

Sequence Viewer

Length: 1089 bp
ATGGACAGTCCTATGGCCCTGCAGCTGGAAGAAGAGGAAAACTTCGGCTGTGCCATGCAGCTGGTGTTTTCTTCTGTGTTGTCCATGTCTATGCAATCAGCAATCGAGCTAGGTGTTTTCGACATCATAGCGAAAGCTGGTCCTGGTGCCAATCTGTCTTCATCAGAGATTGCAGCCCATATCGACAGCGGCACCAGGAATTCTGAGGCACCGATGATGTTGGATCGTATTCTAAGGCTCCTAGCCAGTCACTCTATTCTCAGCTGCTCTGTCGTTGCTAATGAAGAAGATGGGTCTGATTCTCAGAGGCTCTACAGCCTTGGTCCTGTGTCCAACTACTTTGTGACTAATGAAGATGGTGTTTCTTTAGGTCCCATGATTGCATTGGCGCAAGACAAGGTCGTCCTAGACTCCTGGTCCCAACTGAAAGATGCAGTTGTTGAAGGAGGAATTCCATTTCACAGGGTCCATGGCAAGCAGTCTCATGAGTACACAGGTTTAGACCCCAGGTTTAATCAAGTTTTCAACACAGCAATGTTTAACTACACCACTATTGTCATGAAGAAGATTCTTCATCTCTACAAGGGTTTTGAGAAAATTACCCAACTTGTTGATGTTGGTGGTGGTTTGGGAGTCACTATTAGTCTAATCACTTCTAAGCATCCCCATATTAAGGGTATCAATTACGACTTGCCTCATGTCATAAAACATGCCGCTTCATATCCTGGGGTAGAACATGTTGGAGGAGACATGCTTGCAAGTGTTCCATCTGGGGATGCCATTTTGTTGAAGGCGATACTTCACAATTGGAGTGACCAACACTGCCTAAAGGTGTTGGAAAATTGTTACAATGCTATTCCAGACGATGGGAAAGTGATTATTGTGGAAGCACTTCTTCCAGTGATGCCAGAGACTAGCACTGCCGGGAAGACCACCTCCCTATTTGATGTGCTTATGATGACTCAAAACAAGGGAGGAAAGGAGCGGAGCCGAGAAGAGTTCATGACTTTGGCAACTGGTGCTGGATTTAGTGGCATTAAATATGAATGTCTTGTCTGCAACGTTTGGGTGATGGAGATCTTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

363

Amino Acids

39.39

Weight (kDa)

5.34

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 19 - 116 5.7e-20 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 139 - 344 1.4e-62 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 401
AccB1I GGYRCC 3 cut(s) 146, 191, 208
AccB7I CCANNNNNTGG 1 cut(s) 866
AccBSI CCGCTC 1 cut(s) 985
AciI CCGC 3 cut(s) 189, 714, 985
AclI AACGTT 1 cut(s) 1062
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 2 cut(s) 199, 450
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 3 cut(s) 25, 673, 866
AflIII ACRYGT 1 cut(s) 736
AgsI TTSAA 3 cut(s) 443, 526, 790
AhdI GACNNNNNGTC 1 cut(s) 415
AjnI CCWGG 5 cut(s) 142, 194, 413, 506, 724
AluBI AGCT 5 cut(s) 25, 61, 109, 137, 264
AluI AGCT 5 cut(s) 25, 61, 109, 137, 264
Alw26I GTCTC 3 cut(s) 486, 741, 905
AlwI GGATC 1 cut(s) 231
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 4 cut(s) 22, 58, 173, 264
ApoI RAATTY 2 cut(s) 199, 450
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 6 cut(s) 16, 140, 323, 371, 417, 466
AsuC2I CCSGG 1 cut(s) 925
AsuHPI GGTGA 1 cut(s) 1081
AvaII GGWCC 5 cut(s) 140, 323, 371, 417, 466
BanI GGYRCC 3 cut(s) 146, 191, 208
BbsI GAAGAC 2 cut(s) 150, 935
BbvI GCAGC 4 cut(s) 34, 70, 185, 251
BccI CCATC 5 cut(s) 284, 350, 775, 860, 1066
BciT130I CCWGG 5 cut(s) 144, 196, 415, 508, 726
BcnI CCSGG 1 cut(s) 925
BcoDI GTCTC 3 cut(s) 486, 741, 905
BfaI CTAG 4 cut(s) 110, 242, 407, 915
BfmI CTRYAG 2 cut(s) 20, 313
BglII AGATCT 1 cut(s) 1077
BisI GCNGC 6 cut(s) 23, 59, 174, 190, 265, 714
BlsI GCNGC 6 cut(s) 24, 60, 175, 191, 266, 715
Bme1390I CCNGG 6 cut(s) 144, 196, 415, 508, 726, 925
Bme18I GGWCC 5 cut(s) 140, 323, 371, 417, 466
BmeRI GACNNNNNGTC 1 cut(s) 415
BmgT120I GGNCC 6 cut(s) 16, 140, 323, 371, 417, 466
BmiI GGNNCC 8 cut(s) 148, 193, 210, 239, 373, 419, 467, 989
BmrFI CCNGG 6 cut(s) 144, 196, 415, 508, 726, 925
BmsI GCATC 4 cut(s) 421, 670, 766, 894
BpiI GAAGAC 2 cut(s) 150, 935
BpuMI CCSGG 1 cut(s) 925
BsaBI GATNNNNATC 1 cut(s) 1076
BsaJI CCNNGG 4 cut(s) 319, 469, 506, 725
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 673, 866
Bse1I ACTGG 3 cut(s) 246, 899, 1021
Bse3DI GCAATG 1 cut(s) 540
Bse8I GATNNNNATC 1 cut(s) 1076
BseBI CCWGG 5 cut(s) 144, 196, 415, 508, 726
BseDI CCNNGG 4 cut(s) 319, 469, 506, 725
BseGI GGATG 2 cut(s) 661, 781
BseJI GATNNNNATC 1 cut(s) 1076
BseLI CCNNNNNNNGG 3 cut(s) 25, 673, 866
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 3 cut(s) 195, 274, 317
BseNI ACTGG 3 cut(s) 246, 899, 1021
BseRI GAGGAG 1 cut(s) 759
BseXI GCAGC 4 cut(s) 34, 70, 185, 251
BshFI GGCC 1 cut(s) 17
BshNI GGYRCC 3 cut(s) 146, 191, 208
BsiSI CCGG 1 cut(s) 924
BslFI GGGAC 2 cut(s) 357, 403
BslI CCNNNNNNNGG 3 cut(s) 25, 673, 866
BsmAI GTCTC 3 cut(s) 486, 741, 905
BsmFI GGGAC 2 cut(s) 357, 403
BsnI GGCC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 223, 1077
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 3 cut(s) 189, 714, 985
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 3 cut(s) 196, 273, 316
BspHI TCATGA 3 cut(s) 484, 558, 1002
BspLI GGNNCC 8 cut(s) 148, 193, 210, 239, 373, 419, 467, 989
BspMAI CTGCAG 1 cut(s) 24
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 3 cut(s) 146, 191, 208
BsrBI CCGCTC 1 cut(s) 985
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 3 cut(s) 246, 899, 1021
BssECI CCNNGG 4 cut(s) 319, 469, 506, 725
BssMI GATC 2 cut(s) 223, 1077
BssT1I CCWWGG 2 cut(s) 319, 469
Bst2UI CCWGG 5 cut(s) 144, 196, 415, 508, 726
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 2 cut(s) 27, 990
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstC8I GCNNGC 2 cut(s) 476, 756
BstDEI CTNAG 5 cut(s) 204, 233, 260, 303, 657
BstDSI CCRYGG 1 cut(s) 469
BstF5I GGATG 2 cut(s) 661, 781
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 226, 1080
BstMAI GTCTC 3 cut(s) 486, 741, 905
BstMBI GATC 2 cut(s) 223, 1077
BstMWI GCNNNNNNNGC 1 cut(s) 1019
BstNI CCWGG 5 cut(s) 144, 196, 415, 508, 726
BstNSI RCATGY 3 cut(s) 713, 740, 754
BstSCI CCNGG 6 cut(s) 142, 194, 413, 506, 724, 923
BstSFI CTRYAG 2 cut(s) 20, 313
BstV1I GCAGC 4 cut(s) 34, 70, 185, 251
BstV2I GAAGAC 2 cut(s) 150, 935
BstX2I RGATCY 1 cut(s) 1077
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 1077
BsuRI GGCC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 661, 781
BtsI GCAGTG 2 cut(s) 820, 918
BtsIMutI CAGTG 3 cut(s) 820, 906, 918
Cac8I GCNNGC 2 cut(s) 476, 756
CciI TCATGA 3 cut(s) 484, 558, 1002
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 6 cut(s) 16, 140, 323, 371, 417, 466
Csp6I GTAC 1 cut(s) 490
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 5 cut(s) 204, 233, 260, 303, 657
DpnI GATC 2 cut(s) 225, 1079
DpnII GATC 2 cut(s) 223, 1077
DrdI GACNNNNNNGTC 1 cut(s) 401
DriI GACNNNNNGTC 1 cut(s) 415
DseDI GACNNNNNNGTC 1 cut(s) 401
Eam1104I CTCTTC 2 cut(s) 27, 990
Eam1105I GACNNNNNGTC 1 cut(s) 415
EarI CTCTTC 2 cut(s) 27, 990
Eco130I CCWWGG 2 cut(s) 319, 469
Eco47I GGWCC 5 cut(s) 140, 323, 371, 417, 466
EcoO109I RGGNCCY 1 cut(s) 371
EcoRI GAATTC 2 cut(s) 199, 450
EcoRII CCWGG 5 cut(s) 142, 194, 413, 506, 724
EcoT14I CCWWGG 2 cut(s) 319, 469
ErhI CCWWGG 2 cut(s) 319, 469
FalI AAGNNNNNCTT 2 cut(s) 879, 911
FaqI GGGAC 2 cut(s) 357, 403
Fnu4HI GCNGC 6 cut(s) 23, 59, 174, 190, 265, 714
FokI GGATG 2 cut(s) 648, 788
Fsp4HI GCNGC 6 cut(s) 23, 59, 174, 190, 265, 714
FspBI CTAG 4 cut(s) 110, 242, 407, 915
GlaI GCGC 1 cut(s) 390
GluI GCNGC 6 cut(s) 23, 59, 174, 190, 265, 714
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 924
HhaI GCGC 1 cut(s) 391
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 5 cut(s) 299, 410, 568, 633, 961
HpaII CCGG 1 cut(s) 924
HphI GGTGA 1 cut(s) 1081
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 4 cut(s) 166, 205, 298, 306
Hpy188III TCNNGA 4 cut(s) 485, 559, 860, 1003
Hpy8I GTNNAC 1 cut(s) 492
HpyAV CCTTC 2 cut(s) 437, 784
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 1062
HpyCH4V TGCA 8 cut(s) 22, 58, 94, 173, 383, 434, 758, 1059
HpyF10VI GCNNNNNNNGC 1 cut(s) 1019
HpyF3I CTNAG 5 cut(s) 204, 233, 260, 303, 657
HpySE526I ACGT 1 cut(s) 1062
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 2 cut(s) 223, 1077
LmnI GCTCC 3 cut(s) 243, 982, 987
Lsp1109I GCAGC 4 cut(s) 34, 70, 185, 251
LweI GCATC 4 cut(s) 421, 670, 766, 894
MaeI CTAG 4 cut(s) 110, 242, 407, 915
MaeII ACGT 1 cut(s) 1062
MaeIII GTNAC 5 cut(s) 248, 343, 634, 812, 845
MalI GATC 2 cut(s) 225, 1079
MbiI CCGCTC 1 cut(s) 985
MboI GATC 2 cut(s) 223, 1077
MfeI CAATTG 1 cut(s) 805
MflI RGATCY 1 cut(s) 1077
MluCI AATT 6 cut(s) 199, 450, 597, 682, 805, 841
MlyI GAGTC 3 cut(s) 404, 642, 955
MmeI TCCRAC 4 cut(s) 201, 357, 721, 816
MnlI CCTC 8 cut(s) 28, 199, 300, 440, 705, 737, 946, 968
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 5 cut(s) 513, 540, 672, 1038, 1083
MslI CAYNNNNRTG 2 cut(s) 89, 533
MspA1I CMGCKG 4 cut(s) 25, 61, 189, 264
MspI CCGG 1 cut(s) 924
MspR9I CCNGG 6 cut(s) 144, 196, 415, 508, 726, 925
MunI CAATTG 1 cut(s) 805
MvaI CCWGG 5 cut(s) 144, 196, 415, 508, 726
MwoI GCNNNNNNNGC 1 cut(s) 1019
NciI CCSGG 1 cut(s) 925
NcoI CCATGG 1 cut(s) 469
NdeII GATC 2 cut(s) 223, 1077
NlaIV GGNNCC 8 cut(s) 148, 193, 210, 239, 373, 419, 467, 989
NmeAIII GCCGAG 1 cut(s) 1016
NmuCI GTSAC 4 cut(s) 248, 343, 634, 812
NspI RCATGY 3 cut(s) 713, 740, 754
PagI TCATGA 3 cut(s) 484, 558, 1002
PciI ACATGT 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 2 cut(s) 299, 568
PflFI GACNNNGTC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 866
PkrI GCNGC 6 cut(s) 24, 60, 175, 191, 266, 715
PleI GAGTC 3 cut(s) 404, 641, 955
PpsI GAGTC 3 cut(s) 404, 641, 955
PpuMI RGGWCCY 1 cut(s) 371
PscI ACATGT 1 cut(s) 736
Psp1406I AACGTT 1 cut(s) 1062
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 5 cut(s) 142, 194, 413, 506, 724
PspGI CCWGG 5 cut(s) 142, 194, 413, 506, 724
PspN4I GGNNCC 8 cut(s) 148, 193, 210, 239, 373, 419, 467, 989
PspPI GGNCC 6 cut(s) 16, 140, 323, 371, 417, 466
PspPPI RGGWCCY 1 cut(s) 371
PstI CTGCAG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 1077
PsyI GACNNNGTC 1 cut(s) 398
PvuII CAGCTG 3 cut(s) 25, 61, 264
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 2 cut(s) 89, 533
SaqAI TTAA 5 cut(s) 513, 540, 672, 1038, 1083
SatI GCNGC 6 cut(s) 23, 59, 174, 190, 265, 714
Sau3AI GATC 2 cut(s) 223, 1077
Sau96I GGNCC 6 cut(s) 16, 140, 323, 371, 417, 466
SchI GAGTC 3 cut(s) 404, 642, 955
ScrFI CCNGG 6 cut(s) 144, 196, 415, 508, 726, 925
SfaNI GCATC 4 cut(s) 421, 670, 766, 894
SfcI CTRYAG 2 cut(s) 20, 313
SinI GGWCC 5 cut(s) 140, 323, 371, 417, 466
SmiMI CAYNNNNRTG 2 cut(s) 89, 533
Sse9I AATT 6 cut(s) 199, 450, 597, 682, 805, 841
SsiI CCGC 3 cut(s) 189, 714, 985
SspMI CTAG 4 cut(s) 110, 242, 407, 915
StyD4I CCNGG 6 cut(s) 142, 194, 413, 506, 724, 923
StyI CCWWGG 2 cut(s) 319, 469
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 1065
TaqI TCGA 3 cut(s) 105, 120, 183
TasI AATT 6 cut(s) 199, 450, 597, 682, 805, 841
TatI WGTACW 1 cut(s) 489
TauI GCSGC 2 cut(s) 192, 716
TfiI GAWTC 2 cut(s) 299, 568
Tru1I TTAA 5 cut(s) 513, 540, 672, 1038, 1083
Tru9I TTAA 5 cut(s) 513, 540, 672, 1038, 1083
TscAI CASTG 3 cut(s) 827, 906, 925
TseFI GTSAC 4 cut(s) 248, 343, 634, 812
TseI GCWGC 4 cut(s) 22, 58, 173, 264
Tsp45I GTSAC 4 cut(s) 248, 343, 634, 812
TspDTI ATGAA 8 cut(s) 150, 297, 366, 563, 575, 708, 991, 1059
TspRI CASTG 3 cut(s) 827, 906, 925
Tth111I GACNNNGTC 1 cut(s) 398
Van91I CCANNNNNTGG 1 cut(s) 866
VpaK11BI GGWCC 5 cut(s) 140, 323, 371, 417, 466
XapI RAATTY 2 cut(s) 199, 450
XceI RCATGY 3 cut(s) 713, 740, 754
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 4 cut(s) 110, 242, 407, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.