Rh1BG304800
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000357
Physical Location & Seq
Forward (+)
44069415 .. 44069870
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG304800.1

Sequence Viewer

Length: 456 bp
ATGAGCATAGACAGTTCTATGCCTGTAATGGCGTCCACAAACGAAGAAGAAGAAAACTTCTGCTATGCAATGCAGCTGGTGACTTCTACTGTGCTGCCCATGTCCATGAAATTAGCAGTTGAGCTTGGAGTTTTCAACATCATAGCCAAAGCTGGTGGGGGTGCTGGTCTCTCCTCATCCCAGATTGCAGTTCAGATAGGCACCGAGAACCCCGAGGCGCCCATGATGTTGGATCGGATCTTCAGGCTACTGGCAAGCCACTCTGTGCTCAAGTGTACTGTAGTTAATGCTAATGATGATGATCATGGTGATAGAACTAATTTTCAGAAGGTTTATAGTCTTGCTCCTGTGTCCAAGTACTTTGTGAAGAGTGATGAAGATGGTGTTTCTCTAGGTGCTCTAACGGCTTTGACTCAAGACAAGGTCCTCTTGGACAGCTGGTTTGTTTATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

151

Amino Acids

16.3

Weight (kDa)

4.55

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 24 - 124 5e-17 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 200, 217
AclWI GGATC 2 cut(s) 240, 245
AcuI CTGAAG 1 cut(s) 226
AcyI GRCGYC 2 cut(s) 32, 218
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 2 cut(s) 277, 359
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 4 cut(s) 76, 124, 152, 438
AluI AGCT 4 cut(s) 76, 124, 152, 438
Alw21I GWGCWC 2 cut(s) 270, 400
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 2 cut(s) 240, 245
Ama87I CYCGRG 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 73, 94
ArsI GACNNNNNNTTYG 1 cut(s) 425
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 91, 320
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 424
BanI GGYRCC 2 cut(s) 200, 217
Bbv12I GWGCWC 2 cut(s) 270, 400
BbvI GCAGC 2 cut(s) 81, 85
BccI CCATC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 420
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 1 cut(s) 221
BisI GCNGC 2 cut(s) 74, 95
BlsI GCNGC 2 cut(s) 75, 96
BmcAI AGTACT 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 2 cut(s) 202, 219
BpuEI CTTGAG 2 cut(s) 254, 399
BsaBI GATNNNNATC 1 cut(s) 300
BsaHI GRCGYC 2 cut(s) 32, 218
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 176
BseJI GATNNNNATC 1 cut(s) 300
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 81, 85
BshNI GGYRCC 2 cut(s) 200, 217
BsiHKAI GWGCWC 2 cut(s) 270, 400
BsiHKCI CYCGRG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 270, 400
Bsp143I GATC 3 cut(s) 232, 237, 301
BspLI GGNNCC 2 cut(s) 202, 219
BspPI GGATC 2 cut(s) 240, 245
BspT107I GGYRCC 2 cut(s) 200, 217
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 3 cut(s) 232, 237, 301
BssNI GRCGYC 2 cut(s) 32, 218
Bst4CI ACNGT 3 cut(s) 14, 91, 280
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 2 cut(s) 32, 218
BstC8I GCNNGC 1 cut(s) 256
BstF5I GGATG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 3 cut(s) 235, 240, 304
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 3 cut(s) 232, 237, 301
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 81, 85
BstX2I RGATCY 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 1 cut(s) 237
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 424
CseI GACGC 1 cut(s) 21
Csp6I GTAC 2 cut(s) 276, 358
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 4 cut(s) 100, 106, 223, 305
CviJI RGCY 9 cut(s) 76, 124, 146, 152, 247, 258, 407, 438, 453
CviKI_1 RGCY 9 cut(s) 76, 124, 146, 152, 247, 258, 407, 438, 453
CviQI GTAC 2 cut(s) 276, 358
DinI GGCGCC 1 cut(s) 219
DpnI GATC 3 cut(s) 234, 239, 303
DpnII GATC 3 cut(s) 232, 237, 301
DraIII CACNNNGTG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 424
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
FaeI CATG 4 cut(s) 103, 109, 226, 308
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FatI CATG 4 cut(s) 99, 105, 222, 304
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 74, 95
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 2 cut(s) 74, 95
FspBI CTAG 1 cut(s) 392
GlaI GCGC 1 cut(s) 219
GluI GCNGC 2 cut(s) 74, 95
HaeII RGCGCY 1 cut(s) 221
HgaI GACGC 1 cut(s) 21
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 2 cut(s) 32, 218
Hin1II CATG 4 cut(s) 103, 109, 226, 308
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 1 cut(s) 412
HphI GGTGA 2 cut(s) 91, 320
Hpy166II GTNNAC 2 cut(s) 36, 276
Hpy188I TCNGA 3 cut(s) 195, 237, 327
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 2 cut(s) 36, 276
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 3 cut(s) 14, 91, 280
HpyCH4V TGCA 3 cut(s) 68, 73, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
Hsp92I GRCGYC 2 cut(s) 32, 218
Hsp92II CATG 4 cut(s) 103, 109, 226, 308
HspAI GCGC 1 cut(s) 218
KasI GGCGCC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 232, 237, 301
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 9 cut(s) 36, 62, 138, 150, 194, 229, 236, 360, 424
Lsp1109I GCAGC 2 cut(s) 81, 85
MaeI CTAG 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 234, 239, 303
MboI GATC 3 cut(s) 232, 237, 301
MboII GAAGA 6 cut(s) 56, 59, 62, 232, 379, 389
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 270, 400
MluCI AATT 2 cut(s) 110, 319
Mly113I GGCGCC 1 cut(s) 218
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 3 cut(s) 184, 208, 437
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 76, 438
MwoI GCNNNNNNNGC 1 cut(s) 404
NarI GGCGCC 1 cut(s) 218
NdeII GATC 3 cut(s) 232, 237, 301
NlaIII CATG 4 cut(s) 103, 109, 226, 308
NlaIV GGNNCC 2 cut(s) 202, 219
NmuCI GTSAC 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 422
PkrI GCNGC 2 cut(s) 75, 96
PleI GAGTC 1 cut(s) 406
PluTI GGCGCC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 424
Psp5II RGGWCCY 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 202, 219
PspPI GGNCC 1 cut(s) 424
PspPPI RGGWCCY 1 cut(s) 424
PsuI RGATCY 1 cut(s) 237
PsyI GACNNNGTC 1 cut(s) 422
PvuII CAGCTG 2 cut(s) 76, 438
RsaI GTAC 2 cut(s) 277, 359
RsaNI GTAC 2 cut(s) 276, 358
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 74, 95
Sau3AI GATC 3 cut(s) 232, 237, 301
Sau96I GGNCC 1 cut(s) 424
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 1 cut(s) 406
SduI GDGCHC 2 cut(s) 270, 400
SetI ASST 7 cut(s) 78, 126, 154, 333, 397, 426, 440
SfcI CTRYAG 1 cut(s) 279
SfoI GGCGCC 1 cut(s) 219
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 269, 414
SmoI CTYRAG 2 cut(s) 269, 414
Sse9I AATT 2 cut(s) 110, 319
SspDI GGCGCC 1 cut(s) 217
SspMI CTAG 1 cut(s) 392
TaaI ACNGT 3 cut(s) 14, 91, 280
TasI AATT 2 cut(s) 110, 319
TatI WGTACW 2 cut(s) 275, 357
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 73, 94
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 122, 390
Tth111I GACNNNGTC 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 424
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.