FvH4_7g17830
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000357
Physical Location & Seq
Reverse (-)
15029121 .. 15030048
928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17830.t1

Sequence Viewer

Length: 540 bp
ATGTACAGTACTATTACTCCTAATGTTATGGCCTCTACATTGGAAACAAAACCCCACATAGTTCTTGACGATGAAAGAAAGCAAGAAGAAGAGAGCTTTCATTATGCTGTGCAGCTGGTGGTTTCATCTGCTCTGCCCATGTCCATGCAATTAGCCATTGAGGAGCAGGTTCGGGTGTGGCGCTTTCCGCACCTCAGATTGCTGACCAGATTGGGACCAACAACCCTGAGACACCCTTTATGCTGGATCGAATCCTTAGACTCCTCAGTCCTCACCACTCACTCTATACTCGGTTGCTCTGTGGTTGATGGCCAAAGGCTCTACAGCCTCTCCGCCGTGTCCAAGCACTTTGTGACTAATGAAGATGGCATTTCTTTGGGCTCCGTCATGGCATTGTTTCAAGACATGGTCTTCATAAACAGTTGGTCAAAACTGAAATACGCAGTTGTAGAAGGTGGAATTCCATTCGACAGGTTCCATGGCATGCCTAGCTTCGAGTATTCAGGTTGGGCATACCATTTAATTGACAATGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

180

Amino Acids

20.31

Weight (kDa)

5.69

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 157
AciI CCGC 2 cut(s) 188, 333
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 459
AdeI CACNNNGTG 1 cut(s) 352
AfaI GTAC 2 cut(s) 5, 10
AgsI TTSAA 1 cut(s) 401
AluBI AGCT 3 cut(s) 96, 115, 492
AluI AGCT 3 cut(s) 96, 115, 492
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 254
AoxI GGCC 2 cut(s) 30, 310
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 459
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 215
BalI TGGCCA 1 cut(s) 312
BanII GRGCYC 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 302, 359
BceAI ACGGC 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 322
BfoI RGCGCY 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmcAI AGTACT 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 3 cut(s) 216, 382, 476
BpiI GAAGAC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 478
BsaXI ACNNNNNCTCC 3 cut(s) 31, 314, 344
BseDI CCNNGG 1 cut(s) 478
BseMII CTCAG 3 cut(s) 208, 218, 279
BseRI GAGGAG 2 cut(s) 176, 253
BseXI GCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 2 cut(s) 32, 312
BslFI GGGAC 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 2 cut(s) 32, 312
Bsp1286I GDGCHC 1 cut(s) 383
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 246
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 2 cut(s) 188, 333
BspANI GGCC 2 cut(s) 32, 312
BspCNI CTCAG 3 cut(s) 207, 219, 278
BspLI GGNNCC 3 cut(s) 216, 382, 476
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 1 cut(s) 254
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 478
Bst4CI ACNGT 2 cut(s) 8, 422
Bst6I CTCTTC 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 4 cut(s) 194, 227, 256, 265
BstDSI CCRYGG 1 cut(s) 478
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 249
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 187, 489
BstNSI RCATGY 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 403
BsuRI GGCC 2 cut(s) 32, 312
BtgI CCRYGG 1 cut(s) 478
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 485
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 4, 9
CviAII CATG 7 cut(s) 139, 145, 388, 406, 479, 484, 535
CviJI RGCY 9 cut(s) 32, 96, 115, 155, 312, 319, 327, 381, 492
CviKI_1 RGCY 9 cut(s) 32, 96, 115, 155, 312, 319, 327, 381, 492
CviQI GTAC 2 cut(s) 4, 9
DdeI CTNAG 4 cut(s) 194, 227, 256, 265
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DraIII CACNNNGTG 1 cut(s) 352
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 7 cut(s) 142, 148, 391, 409, 482, 487, 538
FaqI GGGAC 1 cut(s) 228
FatI CATG 7 cut(s) 138, 144, 387, 405, 478, 483, 534
Fnu4HI GCNGC 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 489
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 2 cut(s) 32, 312
HhaI GCGC 1 cut(s) 183
Hin1II CATG 7 cut(s) 142, 148, 391, 409, 482, 487, 538
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 2 cut(s) 251, 260
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 2 cut(s) 65, 401
HpyAV CCTTC 1 cut(s) 446
HpyCH4III ACNGT 2 cut(s) 8, 422
HpyCH4V TGCA 2 cut(s) 112, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 489
HpyF3I CTNAG 4 cut(s) 194, 227, 256, 265
Hsp92II CATG 7 cut(s) 142, 148, 391, 409, 482, 487, 538
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 163, 386
LpnPI CCDG 7 cut(s) 101, 152, 220, 229, 239, 457, 489
Lsp1109I GCAGC 1 cut(s) 124
MaeI CTAG 1 cut(s) 489
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 4 cut(s) 98, 101, 374, 403
MhlI GDGCHC 1 cut(s) 383
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 149, 459, 522
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 6 cut(s) 43, 154, 203, 274, 281, 338
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 521
MslI CAYNNNNRTG 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 187, 489
NcoI CCATGG 1 cut(s) 478
NdeII GATC 1 cut(s) 246
NlaIII CATG 7 cut(s) 142, 148, 391, 409, 482, 487, 538
NlaIV GGNNCC 3 cut(s) 216, 382, 476
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 487
PaeI GCATGC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 251
PflFI GACNNNGTC 2 cut(s) 407, 530
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PspN4I GGNNCC 3 cut(s) 216, 382, 476
PspPI GGNCC 1 cut(s) 215
PsyI GACNNNGTC 2 cut(s) 407, 530
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 2 cut(s) 5, 10
RsaNI GTAC 2 cut(s) 4, 9
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 215
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 1 cut(s) 383
SetI ASST 8 cut(s) 98, 117, 171, 195, 457, 476, 494, 508
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 143
SphI GCATGC 1 cut(s) 487
Sse9I AATT 3 cut(s) 149, 459, 522
SsiI CCGC 2 cut(s) 188, 333
SspMI CTAG 1 cut(s) 489
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 8, 422
TaqI TCGA 3 cut(s) 249, 468, 495
TasI AATT 3 cut(s) 149, 459, 522
TatI WGTACW 2 cut(s) 3, 8
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 5 cut(s) 87, 89, 114, 375, 403
TspGWI ACGGA 1 cut(s) 373
Tth111I GACNNNGTC 2 cut(s) 407, 530
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 459
XceI RCATGY 1 cut(s) 487
XspI CTAG 1 cut(s) 489
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.