Rh1DG041200
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000357
Physical Location & Seq
Forward (+)
6561870 .. 6564187
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG041200.1

Sequence Viewer

Length: 837 bp
ATGAGCACAGACAGTTCTAAGCCAGTAATGACGTCCACAAAAGAAGAAGAAGAAGAAGAAGAAAGCTTCAGCTATGCCATGCAGCTGGTGACTTCTAATGTGCTGCCTATGTCCATGCAATCAGCAGTTGAGCTTGGAGTTTTCGACATCATAGCCAAAGCTGGTGCGGGTGCGGGTCTTTCCTCATCCCAGATTGCAGCTCAGCTAGGCACCCAGAACCCCGAGGCGCCCATGATGTTGGATCGAATACTCAGGCTATTGGCAAGTCACTCTGTGCTCAATTGCACTGTGGTTAATGCTAATGATGATGATCATGTTGATGGGCCTAATTTTCAGAGGGTTTATAGTCTTGCTCCTGTGTCCAAGTACTTTGTGAAGAGTGATGAAGATGGTGTTTCTTTAGGCGCCCTGATGGCATTGACTCAAGACAAGGTCTTCTTGGACAGCTGGTTCCGGTTGAAAGGTGCTGTTGTGGAAGGAGGAATCCCATTTAACAGGGTCCATGGCACACATGCCTTTGAGTATCCAGGTTCGGACCCCAGGTTTAACCAAGTGTTCAACACAGCAATGTGCAACCACACCACTATTGTTATCAAGAAAATTCTTGATCTGTACAAGGGTTTTGAGCACCTTAAGCAACTTGTTGATGTTGGGGGTGGCCTTGGAGTGACTCTTAGCCTAATCACTTCTAAATACCCTCATATTAAGGGCATCAACTTTGACTTGCCTCATGTTATCAAACATGCCCCTTCTTACACTGGTATAACTTTTAAGTATTGTACTGTAATGTTTGCATTATTAATCAATTTTTTAATAAAAGTTTTTCCGGACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

278

Amino Acids

30.41

Weight (kDa)

5.69

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 27 - 127 5.8e-20 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 150 - 252 2.3e-28 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccB1I GGYRCC 3 cut(s) 209, 226, 404
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 2 cut(s) 167, 173
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 600
AcuI CTGAAG 1 cut(s) 52
AcyI GRCGYC 3 cut(s) 32, 227, 405
AdeI CACNNNGTG 1 cut(s) 274
AfaI GTAC 3 cut(s) 368, 614, 781
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 2 cut(s) 460, 559
AjnI CCWGG 2 cut(s) 526, 539
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 8 cut(s) 66, 72, 85, 133, 161, 200, 205, 447
AluI AGCT 8 cut(s) 66, 72, 85, 133, 161, 200, 205, 447
Alw21I GWGCWC 3 cut(s) 8, 279, 630
AlwI GGATC 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 2 cut(s) 323, 658
ApeKI GCWGC 3 cut(s) 82, 103, 197
ApoI RAATTY 1 cut(s) 600
AseI ATTAAT 1 cut(s) 800
AspLEI GCGC 2 cut(s) 229, 407
AspS9I GGNCC 3 cut(s) 323, 499, 535
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 499, 535
BanI GGYRCC 3 cut(s) 209, 226, 404
BbsI GAAGAC 1 cut(s) 427
Bbv12I GWGCWC 3 cut(s) 8, 279, 630
BbvI GCAGC 3 cut(s) 90, 94, 209
BccI CCATC 3 cut(s) 314, 383, 406
BciT130I CCWGG 2 cut(s) 528, 541
BciVI GTATCC 1 cut(s) 534
BclI TGATCA 1 cut(s) 310
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 2 cut(s) 230, 408
BfrI CTTAAG 1 cut(s) 632
BfuI GTATCC 1 cut(s) 534
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 3 cut(s) 83, 104, 198
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 3 cut(s) 84, 105, 199
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 2 cut(s) 528, 541
Bme18I GGWCC 2 cut(s) 499, 535
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 323, 499, 535
BmiI GGNNCC 6 cut(s) 211, 228, 406, 452, 500, 537
BmrFI CCNGG 2 cut(s) 528, 541
BmsI GCATC 1 cut(s) 720
BpiI GAAGAC 1 cut(s) 427
Bpu1102I GCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 3 cut(s) 32, 227, 405
BsaJI CCNNGG 4 cut(s) 222, 502, 539, 661
BsaWI WCCGGW 2 cut(s) 453, 826
Bse1I ACTGG 2 cut(s) 23, 763
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 2 cut(s) 528, 541
BseDI CCNNGG 4 cut(s) 222, 502, 539, 661
BseGI GGATG 1 cut(s) 185
BseJI GATNNNNATC 1 cut(s) 309
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 2 cut(s) 215, 265
BseNI ACTGG 2 cut(s) 23, 763
BseXI GCAGC 3 cut(s) 90, 94, 209
BshFI GGCC 2 cut(s) 325, 660
BshNI GGYRCC 3 cut(s) 209, 226, 404
BsiHKAI GWGCWC 3 cut(s) 8, 279, 630
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 2 cut(s) 454, 827
BsnI GGCC 2 cut(s) 325, 660
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 8, 279, 630
Bsp13I TCCGGA 1 cut(s) 826
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 3 cut(s) 241, 310, 607
Bsp1720I GCTNAGC 1 cut(s) 201
Bsp19I CCATGG 1 cut(s) 502
BspACI CCGC 2 cut(s) 167, 173
BspANI GGCC 2 cut(s) 325, 660
BspCNI CTCAG 2 cut(s) 214, 264
BspEI TCCGGA 1 cut(s) 826
BspLI GGNNCC 6 cut(s) 211, 228, 406, 452, 500, 537
BspPI GGATC 1 cut(s) 249
BspT107I GGYRCC 3 cut(s) 209, 226, 404
BspTI CTTAAG 1 cut(s) 632
BsrDI GCAATG 1 cut(s) 573
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 2 cut(s) 23, 763
BssECI CCNNGG 4 cut(s) 222, 502, 539, 661
BssMI GATC 3 cut(s) 241, 310, 607
BssNI GRCGYC 3 cut(s) 32, 227, 405
BssT1I CCWWGG 2 cut(s) 502, 661
Bst2UI CCWGG 2 cut(s) 528, 541
Bst4CI ACNGT 4 cut(s) 14, 289, 784, 833
Bst6I CTCTTC 1 cut(s) 371
BstACI GRCGYC 3 cut(s) 32, 227, 405
BstAFI CTTAAG 1 cut(s) 632
BstAUI TGTACA 1 cut(s) 612
BstDEI CTNAG 4 cut(s) 18, 201, 251, 674
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 1 cut(s) 185
BstH2I RGCGCY 2 cut(s) 230, 408
BstHHI GCGC 2 cut(s) 229, 407
BstKTI GATC 3 cut(s) 244, 313, 610
BstMBI GATC 3 cut(s) 241, 310, 607
BstMWI GCNNNNNNNGC 2 cut(s) 413, 634
BstNI CCWGG 2 cut(s) 528, 541
BstNSI RCATGY 2 cut(s) 515, 746
BstSCI CCNGG 2 cut(s) 526, 539
BstV1I GCAGC 3 cut(s) 90, 94, 209
BstV2I GAAGAC 1 cut(s) 427
BstXI CCANNNNNNTGG 2 cut(s) 85, 238
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 2 cut(s) 325, 660
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 2 cut(s) 285, 756
CfoI GCGC 2 cut(s) 229, 407
Cfr13I GGNCC 3 cut(s) 323, 499, 535
Csp6I GTAC 3 cut(s) 367, 613, 780
CviAII CATG 8 cut(s) 79, 115, 232, 314, 503, 512, 731, 743
CviQI GTAC 3 cut(s) 367, 613, 780
DdeI CTNAG 4 cut(s) 18, 201, 251, 674
DinI GGCGCC 2 cut(s) 228, 406
DpnI GATC 3 cut(s) 243, 312, 609
DpnII GATC 3 cut(s) 241, 310, 607
DraIII CACNNNGTG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 371
EarI CTCTTC 1 cut(s) 371
Eco130I CCWWGG 2 cut(s) 502, 661
Eco47I GGWCC 2 cut(s) 499, 535
Eco57I CTGAAG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 526, 539
EcoT14I CCWWGG 2 cut(s) 502, 661
EgeI GGCGCC 2 cut(s) 228, 406
EheI GGCGCC 2 cut(s) 228, 406
ErhI CCWWGG 2 cut(s) 502, 661
FaeI CATG 8 cut(s) 82, 118, 235, 317, 506, 515, 734, 746
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 8 cut(s) 78, 114, 231, 313, 502, 511, 730, 742
FauI CCCGC 2 cut(s) 160, 166
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 3 cut(s) 83, 104, 198
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 3 cut(s) 83, 104, 198
FspBI CTAG 1 cut(s) 206
GlaI GCGC 2 cut(s) 228, 406
GluI GCNGC 3 cut(s) 83, 104, 198
HaeII RGCGCY 2 cut(s) 230, 408
HaeIII GGCC 2 cut(s) 325, 660
HapII CCGG 2 cut(s) 454, 827
HhaI GCGC 2 cut(s) 229, 407
Hin1I GRCGYC 3 cut(s) 32, 227, 405
Hin1II CATG 8 cut(s) 82, 118, 235, 317, 506, 515, 734, 746
Hin6I GCGC 2 cut(s) 227, 405
HinP1I GCGC 2 cut(s) 227, 405
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 3 cut(s) 421, 483, 670
HpaII CCGG 2 cut(s) 454, 827
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 2 cut(s) 336, 535
Hpy188III TCNNGA 4 cut(s) 425, 595, 605, 827
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 2 cut(s) 470, 759
HpyCH4III ACNGT 4 cut(s) 14, 289, 784, 833
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 6 cut(s) 82, 118, 197, 285, 573, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 634
HpyF3I CTNAG 4 cut(s) 18, 201, 251, 674
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 3 cut(s) 32, 227, 405
Hsp92II CATG 8 cut(s) 82, 118, 235, 317, 506, 515, 734, 746
HspAI GCGC 2 cut(s) 227, 405
KasI GGCGCC 2 cut(s) 226, 404
Kpn2I TCCGGA 1 cut(s) 826
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 241, 310, 607
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 3 cut(s) 90, 94, 209
LweI GCATC 1 cut(s) 720
MaeI CTAG 1 cut(s) 206
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 3 cut(s) 88, 266, 667
MalI GATC 3 cut(s) 243, 312, 609
MboI GATC 3 cut(s) 241, 310, 607
MboII GAAGA 9 cut(s) 56, 59, 62, 65, 68, 71, 388, 398, 427
MfeI CAATTG 1 cut(s) 280
MhlI GDGCHC 3 cut(s) 8, 279, 630
MluCI AATT 4 cut(s) 280, 328, 600, 805
Mly113I GGCGCC 2 cut(s) 227, 405
MlyI GAGTC 2 cut(s) 415, 664
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 6 cut(s) 193, 217, 330, 473, 708, 738
MroI TCCGGA 1 cut(s) 826
MseI TTAA 8 cut(s) 294, 492, 546, 633, 705, 771, 800, 812
MslI CAYNNNNRTG 2 cut(s) 318, 566
MspA1I CMGCKG 2 cut(s) 85, 447
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 2 cut(s) 454, 827
MspR9I CCNGG 2 cut(s) 528, 541
MunI CAATTG 1 cut(s) 280
MvaI CCWGG 2 cut(s) 528, 541
MwoI GCNNNNNNNGC 2 cut(s) 413, 634
NarI GGCGCC 2 cut(s) 227, 405
NcoI CCATGG 1 cut(s) 502
NdeII GATC 3 cut(s) 241, 310, 607
NlaIII CATG 8 cut(s) 82, 118, 235, 317, 506, 515, 734, 746
NlaIV GGNNCC 6 cut(s) 211, 228, 406, 452, 500, 537
NmuCI GTSAC 3 cut(s) 88, 266, 667
NspI RCATGY 2 cut(s) 515, 746
PfeI GAWTC 1 cut(s) 483
PflFI GACNNNGTC 1 cut(s) 431
PkrI GCNGC 3 cut(s) 84, 105, 199
PleI GAGTC 2 cut(s) 415, 664
PluTI GGCGCC 2 cut(s) 230, 408
PpsI GAGTC 2 cut(s) 415, 664
PshBI ATTAAT 1 cut(s) 800
Psp6I CCWGG 2 cut(s) 526, 539
PspGI CCWGG 2 cut(s) 526, 539
PspN4I GGNNCC 6 cut(s) 211, 228, 406, 452, 500, 537
PspPI GGNCC 3 cut(s) 323, 499, 535
PsyI GACNNNGTC 1 cut(s) 431
PvuII CAGCTG 2 cut(s) 85, 447
RsaI GTAC 3 cut(s) 368, 614, 781
RsaNI GTAC 3 cut(s) 367, 613, 780
RseI CAYNNNNRTG 2 cut(s) 318, 566
SaqAI TTAA 8 cut(s) 294, 492, 546, 633, 705, 771, 800, 812
SatI GCNGC 3 cut(s) 83, 104, 198
Sau3AI GATC 3 cut(s) 241, 310, 607
Sau96I GGNCC 3 cut(s) 323, 499, 535
ScaI AGTACT 1 cut(s) 368
SchI GAGTC 2 cut(s) 415, 664
ScrFI CCNGG 2 cut(s) 528, 541
SduI GDGCHC 3 cut(s) 8, 279, 630
SfaNI GCATC 1 cut(s) 720
SfoI GGCGCC 2 cut(s) 228, 406
SinI GGWCC 2 cut(s) 499, 535
SmiMI CAYNNNNRTG 2 cut(s) 318, 566
SmlI CTYRAG 2 cut(s) 423, 632
SmoI CTYRAG 2 cut(s) 423, 632
Sse9I AATT 4 cut(s) 280, 328, 600, 805
SsiI CCGC 2 cut(s) 167, 173
SspDI GGCGCC 2 cut(s) 226, 404
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 526, 539
StyI CCWWGG 2 cut(s) 502, 661
TaaI ACNGT 4 cut(s) 14, 289, 784, 833
TaiI ACGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 144, 244
TasI AATT 4 cut(s) 280, 328, 600, 805
TatI WGTACW 3 cut(s) 366, 612, 779
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 8 cut(s) 294, 492, 546, 633, 705, 771, 800, 812
Tru9I TTAA 8 cut(s) 294, 492, 546, 633, 705, 771, 800, 812
TscAI CASTG 2 cut(s) 292, 763
TseFI GTSAC 3 cut(s) 88, 266, 667
TseI GCWGC 3 cut(s) 82, 103, 197
Tsp45I GTSAC 3 cut(s) 88, 266, 667
TspDTI ATGAA 1 cut(s) 399
TspRI CASTG 2 cut(s) 292, 763
Tth111I GACNNNGTC 1 cut(s) 431
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 499, 535
VspI ATTAAT 1 cut(s) 800
XapI RAATTY 1 cut(s) 600
XceI RCATGY 2 cut(s) 515, 746
XspI CTAG 1 cut(s) 206
ZraI GACGTC 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.