Rmu_sc0011132.1_g000005
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011132.1
OG0000357
Physical Location & Seq
Reverse (-)
20026 .. 21439
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011132.1_g000005.1.cds

Sequence Viewer

Length: 408 bp
atggcttgtgactctagacgcctccgtgacccaacccggacggcgcgcctccatccgaccaccgatagacgatggactaccaccatcttcttcgtctcgccgtcgccaatagcctactatccttggatcctggtgatttccactgcgctgtccatgtccacgcaattagcagttgagcttggagttttcgacatcatagccaaagctggtgcgggtgcgggtctctcctcattgcagatagcagctcagataggcaccgagaaccctgatgtgcccatgatgttggatcggatcctcaagctactggcaagtcactttgtgctcaattgcattgtggttaatgctaatgatgatgatcatagtgatgggcctaattttcagagggtttatagtcttatgtttctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

135

Amino Acids

14.92

Weight (kDa)

6.24

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AccII CGCG 1 cut(s) 46
AciI CCGC 2 cut(s) 212, 218
AclWI GGATC 5 cut(s) 121, 134, 286, 294, 299
AcyI GRCGYC 1 cut(s) 19
AdeI CACNNNGTG 1 cut(s) 319
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 4 cut(s) 178, 206, 245, 301
AluI AGCT 4 cut(s) 178, 206, 245, 301
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 100, 227
AlwI GGATC 5 cut(s) 121, 134, 286, 294, 299
AoxI GGCC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 242
AscI GGCGCGCC 1 cut(s) 44
AspLEI GCGC 3 cut(s) 46, 48, 148
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 276
BamHI GGATCC 2 cut(s) 126, 291
BanI GGYRCC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 254
BccI CCATC 4 cut(s) 60, 66, 92, 359
BceAI ACGGC 2 cut(s) 57, 85
BciT130I CCWGG 1 cut(s) 131
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 100, 227
BfaI CTAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 37, 131
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 3 cut(s) 128, 256, 293
BmrFI CCNGG 2 cut(s) 37, 131
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 230
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 52
BseJI GATNNNNATC 1 cut(s) 354
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 309
BsePI GCGCGC 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 370
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 37
BsmAI GTCTC 2 cut(s) 100, 227
BsmBI CGTCTC 1 cut(s) 100
BsnI GGCC 1 cut(s) 370
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 276, 324
Bsp143I GATC 4 cut(s) 126, 286, 291, 355
BspACI CCGC 2 cut(s) 212, 218
BspANI GGCC 1 cut(s) 370
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 3 cut(s) 128, 256, 293
BspPI GGATC 5 cut(s) 121, 134, 286, 294, 299
BspT107I GGYRCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 230
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 122
BssHII GCGCGC 1 cut(s) 44
BssMI GATC 4 cut(s) 126, 286, 291, 355
BssNI GRCGYC 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 46
BstHHI GCGC 3 cut(s) 46, 48, 148
BstKTI GATC 4 cut(s) 129, 289, 294, 358
BstMAI GTCTC 2 cut(s) 100, 227
BstMBI GATC 4 cut(s) 126, 286, 291, 355
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 35, 129
BstSLI GKGCMC 1 cut(s) 276
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 254
BstX2I RGATCY 2 cut(s) 126, 291
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 2 cut(s) 126, 291
BsuRI GGCC 1 cut(s) 370
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 46
CfoI GCGC 3 cut(s) 46, 48, 148
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 27
CviAII CATG 2 cut(s) 154, 277
CviJI RGCY 8 cut(s) 5, 113, 178, 200, 206, 245, 301, 370
CviKI_1 RGCY 8 cut(s) 5, 113, 178, 200, 206, 245, 301, 370
DdeI CTNAG 1 cut(s) 246
DpnI GATC 4 cut(s) 128, 288, 293, 357
DpnII GATC 4 cut(s) 126, 286, 291, 355
DraIII CACNNNGTG 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 2 cut(s) 157, 280
FaiI YATR 6 cut(s) 155, 197, 278, 360, 390, 398
FatI CATG 2 cut(s) 153, 276
FauI CCCGC 2 cut(s) 205, 211
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 15
GlaI GCGC 3 cut(s) 45, 47, 147
GluI GCNGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 370
HapII CCGG 1 cut(s) 37
HgaI GACGC 1 cut(s) 27
HhaI GCGC 3 cut(s) 46, 48, 148
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 2 cut(s) 157, 280
Hin6I GCGC 3 cut(s) 44, 46, 146
HinP1I GCGC 3 cut(s) 44, 46, 146
HinfI GANTC 1 cut(s) 11
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 4 cut(s) 57, 249, 291, 381
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 235, 330
HpyF3I CTNAG 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 2 cut(s) 157, 280
HspAI GCGC 3 cut(s) 44, 46, 146
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 126, 286, 291, 355
LpnPI CCDG 6 cut(s) 50, 116, 143, 192, 279, 290
Lsp1109I GCAGC 1 cut(s) 254
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 3 cut(s) 8, 26, 311
MalI GATC 4 cut(s) 128, 288, 293, 357
MboI GATC 4 cut(s) 126, 286, 291, 355
MboII GAAGA 2 cut(s) 79, 82
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 2 cut(s) 126, 291
MhlI GDGCHC 2 cut(s) 276, 324
MluCI AATT 3 cut(s) 164, 325, 373
MlyI GAGTC 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 80, 264
MnlI CCTC 5 cut(s) 32, 59, 238, 305, 375
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 363
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 37, 131
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 46
NciI CCSGG 1 cut(s) 37
NdeII GATC 4 cut(s) 126, 286, 291, 355
NlaIII CATG 2 cut(s) 157, 280
NlaIV GGNNCC 3 cut(s) 128, 256, 293
NmuCI GTSAC 3 cut(s) 8, 26, 311
PalAI GGCGCGCC 1 cut(s) 44
PauI GCGCGC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 128, 256, 293
PspPI GGNCC 1 cut(s) 368
PsuI RGATCY 2 cut(s) 126, 291
PteI GCGCGC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 4 cut(s) 126, 286, 291, 355
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 1 cut(s) 5
ScrFI CCNGG 2 cut(s) 37, 131
SduI GDGCHC 2 cut(s) 276, 324
SetI ASST 4 cut(s) 180, 208, 247, 303
SgsI GGCGCGCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 3 cut(s) 164, 325, 373
SsiI CCGC 2 cut(s) 212, 218
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 35, 129
StyI CCWWGG 1 cut(s) 122
TaqI TCGA 1 cut(s) 189
TasI AATT 3 cut(s) 164, 325, 373
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 3 cut(s) 8, 26, 311
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 3 cut(s) 8, 26, 311
TspGWI ACGGA 1 cut(s) 14
TspRI CASTG 1 cut(s) 148
XbaI TCTAGA 1 cut(s) 14
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.