Rh1AG298900
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000357
Physical Location & Seq
Reverse (-)
53038452 .. 53040943
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG298900.1

Sequence Viewer

Length: 846 bp
ATGGCCTCTTCACTGGAAACAAAACCCCAAGCCATAGTTCTTGACGATGAAAGAAAGCAAGAAGAAGAAAGCTTTCATTATGCTGTGCAGCTGGTGGTTTCATCTGCGCTGCCCATGTCCATGCAATCAGCCATTGAGCTCGGACTTTTTGATATCATAGCCAGAGCAGGTTCGGGTGCGGGGCTCTCTGCACCCCAGATTGCTGCCCAGATTGGCACCCAGAATCCTGAGGCAGCCTTTATGCTGGATCGAATCCTTAGGCTCCTCGCCACTCACTCTGTACTTGGTTGCTCTCTGGTTGATGGCCAAAGGCTCTACAGGCTCTCCGCGGTGTCCAAGTACTTTGTGACTGAAGATGGCGTTTCGTTGGGCTTCGTCATGGCATTGTTCCAAGACAAGGTCTTCATAAACAGTTGGTCAAAACTGAAAGACGCAATTATTGAAGGTGGAATTCCATTTGAGAGGTTCCATGGCATGCCTACCTTTGAGTATTCAGGTTCGGACCCGAGGTTTAATCAGGTTTTCAACACAGCAATGTTCAACCACACCACTCTTGTTGTGAAGCGGATTCTTGATCTCTACAGGGGTTTTGAGCACCTTAGGGAGCTTGTTGATGTTGGTGGTGGTTTGGGAGTAGCTCTCAGTCTAATCACTTCCAGATACCCTCATATTAAGGGAATCAATTACGATCTGCCGCATGTTATAAAATATGCTCACCCTTCTCCTGGTGTCGAACATGTGGGAGGAGACATGTTTGCCCATGTTCCAAGTGGAGATGCCATTTTCTTAAAGGTTGATTATTTTTTAAGTTTCTCAAGTGCAGGTTTCTTTTATGAGACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

281

Amino Acids

30.92

Weight (kDa)

5.65

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 30 - 117 7.4e-19 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 139 - 264 4.3e-35 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
Acc36I ACCTGC 2 cut(s) 158, 812
AccB1I GGYRCC 1 cut(s) 215
AccII CGCG 1 cut(s) 329
AciI CCGC 5 cut(s) 179, 327, 329, 565, 695
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 450
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 2 cut(s) 282, 341
AfiI CCNNNNNNNGG 2 cut(s) 397, 725
AflIII ACRYGT 2 cut(s) 736, 750
AgsI TTSAA 3 cut(s) 443, 526, 541
AjnI CCWGG 1 cut(s) 724
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 6 cut(s) 72, 91, 139, 607, 638, 843
AluI AGCT 6 cut(s) 72, 91, 139, 607, 638, 843
Alw21I GWGCWC 2 cut(s) 141, 597
Alw26I GTCTC 2 cut(s) 741, 830
AlwI GGATC 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 2 cut(s) 3, 304
ApeKI GCWGC 4 cut(s) 88, 109, 203, 233
ApoI RAATTY 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 1 cut(s) 707
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 1 cut(s) 502
AxyI CCTNAGG 3 cut(s) 228, 257, 599
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 2 cut(s) 141, 186
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 2 cut(s) 141, 597
BbvI GCAGC 4 cut(s) 96, 100, 190, 245
BccI CCATC 2 cut(s) 296, 350
BciT130I CCWGG 1 cut(s) 726
BcoDI GTCTC 2 cut(s) 741, 830
BfaI CTAG 1 cut(s) 844
BfmI CTRYAG 2 cut(s) 316, 580
BfuAI ACCTGC 2 cut(s) 158, 812
BisI GCNGC 5 cut(s) 89, 110, 204, 234, 695
BlsI GCNGC 5 cut(s) 90, 111, 205, 235, 696
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 726
Bme18I GGWCC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 4 cut(s) 217, 263, 467, 504
BmrFI CCNGG 1 cut(s) 726
BmsI GCATC 1 cut(s) 766
BpiI GAAGAC 1 cut(s) 394
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BpuEI CTTGAG 1 cut(s) 799
BsaJI CCNNGG 3 cut(s) 327, 469, 506
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 725
Bse1I ACTGG 1 cut(s) 18
Bse21I CCTNAGG 3 cut(s) 228, 257, 599
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 3 cut(s) 327, 469, 506
BseLI CCNNNNNNNGG 2 cut(s) 397, 725
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 219, 655
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 2 cut(s) 254, 759
BseXI GCAGC 4 cut(s) 96, 100, 190, 245
BsgI GTGCAG 3 cut(s) 107, 174, 840
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 5, 306
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 2 cut(s) 141, 597
BsiHKCI CYCGRG 1 cut(s) 505
BslI CCNNNNNNNGG 2 cut(s) 397, 725
BsmAI GTCTC 2 cut(s) 741, 830
BsnI GGCC 2 cut(s) 5, 306
BsoBI CYCGRG 1 cut(s) 505
Bsp1286I GDGCHC 3 cut(s) 141, 186, 597
Bsp143I GATC 3 cut(s) 247, 574, 688
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 5 cut(s) 179, 327, 329, 565, 695
BspANI GGCC 2 cut(s) 5, 306
BspCNI CTCAG 2 cut(s) 220, 654
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 4 cut(s) 217, 263, 467, 504
BspMI ACCTGC 2 cut(s) 158, 812
BspPI GGATC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 3 cut(s) 327, 469, 506
BssMI GATC 3 cut(s) 247, 574, 688
BssT1I CCWWGG 1 cut(s) 469
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 4 cut(s) 228, 257, 599, 641
BstDSI CCRYGG 2 cut(s) 327, 469
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 3 cut(s) 250, 577, 691
BstMAI GTCTC 2 cut(s) 741, 830
BstMBI GATC 3 cut(s) 247, 574, 688
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 4 cut(s) 478, 701, 740, 754
BstSCI CCNGG 1 cut(s) 724
BstSFI CTRYAG 2 cut(s) 316, 580
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 4 cut(s) 96, 100, 190, 245
BstV2I GAAGAC 1 cut(s) 394
Bsu36I CCTNAGG 3 cut(s) 228, 257, 599
BsuRI GGCC 2 cut(s) 5, 306
BtgI CCRYGG 2 cut(s) 327, 469
BtsIMutI CAGTG 1 cut(s) 11
BveI ACCTGC 2 cut(s) 158, 812
Cac8I GCNNGC 1 cut(s) 476
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 502
Cfr42I CCGCGG 1 cut(s) 330
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 281, 340
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 9 cut(s) 115, 121, 379, 470, 475, 698, 737, 751, 761
CviQI GTAC 2 cut(s) 281, 340
DdeI CTNAG 4 cut(s) 228, 257, 599, 641
DpnI GATC 3 cut(s) 249, 576, 690
DpnII GATC 3 cut(s) 247, 574, 688
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 469
Eco24I GRGCYC 2 cut(s) 141, 186
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 372
Eco81I CCTNAGG 3 cut(s) 228, 257, 599
Eco88I CYCGRG 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 724
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 469
EcoT38I GRGCYC 2 cut(s) 141, 186
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 9 cut(s) 118, 124, 382, 473, 478, 701, 740, 754, 764
FatI CATG 9 cut(s) 114, 120, 378, 469, 474, 697, 736, 750, 760
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 5 cut(s) 89, 110, 204, 234, 695
FriOI GRGCYC 2 cut(s) 141, 186
Fsp4HI GCNGC 5 cut(s) 89, 110, 204, 234, 695
FspBI CTAG 1 cut(s) 844
GlaI GCGC 1 cut(s) 108
GluI GCNGC 5 cut(s) 89, 110, 204, 234, 695
HaeIII GGCC 2 cut(s) 5, 306
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 109
Hin1II CATG 9 cut(s) 118, 124, 382, 473, 478, 701, 740, 754, 764
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 4 cut(s) 223, 252, 568, 678
HphI GGTGA 1 cut(s) 707
Hpy188I TCNGA 2 cut(s) 143, 502
Hpy188III TCNNGA 4 cut(s) 41, 227, 572, 657
HpyAV CCTTC 2 cut(s) 437, 729
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4V TGCA 4 cut(s) 88, 124, 191, 821
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 4 cut(s) 228, 257, 599, 641
Hsp92II CATG 9 cut(s) 118, 124, 382, 473, 478, 701, 740, 754, 764
HspAI GCGC 1 cut(s) 107
KspI CCGCGG 1 cut(s) 330
Kzo9I GATC 3 cut(s) 247, 574, 688
LmnI GCTCC 2 cut(s) 267, 604
Lsp1109I GCAGC 4 cut(s) 96, 100, 190, 245
LweI GCATC 1 cut(s) 766
MaeI CTAG 1 cut(s) 844
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 249, 576, 690
MboI GATC 3 cut(s) 247, 574, 688
MboII GAAGA 4 cut(s) 74, 77, 365, 394
MhlI GDGCHC 3 cut(s) 141, 186, 597
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 3 cut(s) 435, 450, 682
MluNI TGGCCA 1 cut(s) 306
MnlI CCTC 7 cut(s) 16, 223, 275, 456, 501, 675, 737
Mox20I TGGCCA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 72
MscI TGGCCA 1 cut(s) 306
MseI TTAA 4 cut(s) 513, 672, 788, 806
MslI CAYNNNNRTG 2 cut(s) 119, 533
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 2 cut(s) 91, 329
MspR9I CCNGG 1 cut(s) 726
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 319
NcoI CCATGG 1 cut(s) 469
NdeII GATC 3 cut(s) 247, 574, 688
NlaIII CATG 9 cut(s) 118, 124, 382, 473, 478, 701, 740, 754, 764
NlaIV GGNNCC 4 cut(s) 217, 263, 467, 504
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 4 cut(s) 478, 701, 740, 754
PaeI GCATGC 1 cut(s) 478
PciI ACATGT 2 cut(s) 736, 750
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 4 cut(s) 223, 252, 568, 678
PflFI GACNNNGTC 1 cut(s) 398
PkrI GCNGC 5 cut(s) 90, 111, 205, 235, 696
PscI ACATGT 2 cut(s) 736, 750
PsiI TTATAA 1 cut(s) 704
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 4 cut(s) 217, 263, 467, 504
PspPI GGNCC 1 cut(s) 502
PsyI GACNNNGTC 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 2 cut(s) 282, 341
RsaNI GTAC 2 cut(s) 281, 340
RseI CAYNNNNRTG 2 cut(s) 119, 533
SacI GAGCTC 1 cut(s) 141
SacII CCGCGG 1 cut(s) 330
SaqAI TTAA 4 cut(s) 513, 672, 788, 806
SatI GCNGC 5 cut(s) 89, 110, 204, 234, 695
Sau3AI GATC 3 cut(s) 247, 574, 688
Sau96I GGNCC 1 cut(s) 502
ScaI AGTACT 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 726
SduI GDGCHC 3 cut(s) 141, 186, 597
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 2 cut(s) 316, 580
Sfr303I CCGCGG 1 cut(s) 330
SgrBI CCGCGG 1 cut(s) 330
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 2 cut(s) 119, 533
SmlI CTYRAG 1 cut(s) 814
SmoI CTYRAG 1 cut(s) 814
SphI GCATGC 1 cut(s) 478
Sse9I AATT 3 cut(s) 435, 450, 682
SsiI CCGC 5 cut(s) 179, 327, 329, 565, 695
SspMI CTAG 1 cut(s) 844
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 724
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 413
TaqI TCGA 2 cut(s) 250, 732
TasI AATT 3 cut(s) 435, 450, 682
TatI WGTACW 2 cut(s) 280, 339
TauI GCSGC 1 cut(s) 697
TfiI GAWTC 4 cut(s) 223, 252, 568, 678
Tru1I TTAA 4 cut(s) 513, 672, 788, 806
Tru9I TTAA 4 cut(s) 513, 672, 788, 806
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 88, 109, 203, 233
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 63, 65, 90, 394
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 1 cut(s) 450
XceI RCATGY 4 cut(s) 478, 701, 740, 754
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 1 cut(s) 844
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.