Rh1AG298500
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
53014810 .. 53015567
758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG298500.1

Sequence Viewer

Length: 453 bp
ATGTTCAACCACACCGCTATTGTTATCAAGAAAATTCTTGATCTCTACAAGGGTTTTGAGCACCTTAAGCAACTTGTTGATGCTGGGGGTGGCCTTGGAGTGACTCTTAGCCTAATCACTTCTAGATACCCTCATATTAAGGGCATTAACTTTGACTTGCCTCATGTCATCAAAGATGCCCCTTCTTACACTGGAGTGGAACATGTTGGAGGAGACATGTTTGCAAGTGTTTCAAGTGGGGATGCCATTTTTATGAAGTGGATACTTCATGACTGGAGTGATGAACACTGCTTGAAGCTCCTGAAAAATTGTTACAATGCTATACCAGACAATGGAAAAGTAATTGTTGTGGAAGCACTTCTTCCAGTTGTGCCAGAGACTAGCACTGCTGTGAAGAGCACCTCCCAAATTGATGTGCTTATGATGACACAGAGCCCAGGAGGAAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.38

Weight (kDa)

6.13

Isoelectric Point (pI)

23.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 2 - 150 2e-48 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AciI CCGC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 332
AflII CTTAAG 1 cut(s) 65
AflIII ACRYGT 2 cut(s) 202, 216
AgsI TTSAA 3 cut(s) 7, 234, 295
AjnI CCWGG 1 cut(s) 436
AleI CACNNNNGTG 2 cut(s) 194, 389
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw21I GWGCWC 2 cut(s) 63, 401
Alw26I GTCTC 2 cut(s) 207, 371
AoxI GGCC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 357
BanII GRGCYC 1 cut(s) 437
Bbv12I GWGCWC 2 cut(s) 63, 401
BciT130I CCWGG 1 cut(s) 438
BciVI GTATCC 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 207, 371
BfaI CTAG 2 cut(s) 123, 381
BfrI CTTAAG 1 cut(s) 65
BfuI GTATCC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 3 cut(s) 70, 166, 232
BpmI CTGGAG 2 cut(s) 213, 295
BsaJI CCNNGG 2 cut(s) 94, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 3 cut(s) 196, 278, 365
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 94, 436
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 332
BseNI ACTGG 3 cut(s) 196, 278, 365
BseRI GAGGAG 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 83
BshFI GGCC 1 cut(s) 93
BsiHKAI GWGCWC 2 cut(s) 63, 401
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 2 cut(s) 207, 371
BsnI GGCC 1 cut(s) 93
Bsp1286I GDGCHC 3 cut(s) 63, 401, 437
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 93
BspHI TCATGA 1 cut(s) 268
BspQI GCTCTTC 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 65
BsrI ACTGG 3 cut(s) 196, 278, 365
BssECI CCNNGG 2 cut(s) 94, 436
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 438
Bst6I CTCTTC 1 cut(s) 389
BstAFI CTTAAG 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 2 cut(s) 207, 371
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 2 cut(s) 206, 220
BstSCI CCNGG 1 cut(s) 436
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 2 cut(s) 286, 384
BtsIMutI CAGTG 3 cut(s) 189, 286, 384
CciI TCATGA 1 cut(s) 268
CviAII CATG 4 cut(s) 164, 203, 217, 269
CviJI RGCY 4 cut(s) 93, 111, 298, 435
CviKI_1 RGCY 4 cut(s) 93, 111, 298, 435
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 167, 206, 220, 272
FaiI YATR 8 cut(s) 135, 165, 204, 218, 254, 270, 323, 422
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 4 cut(s) 163, 202, 216, 268
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 437
FspBI CTAG 2 cut(s) 123, 381
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 2 cut(s) 213, 295
HaeIII GGCC 1 cut(s) 93
Hin1II CATG 4 cut(s) 167, 206, 220, 272
HinfI GANTC 1 cut(s) 103
Hpy188III TCNNGA 5 cut(s) 28, 38, 123, 269, 301
HpyAV CCTTC 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 4 cut(s) 167, 206, 220, 272
Kzo9I GATC 1 cut(s) 40
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 8 cut(s) 69, 177, 259, 314, 339, 378, 387, 423
LweI GCATC 3 cut(s) 70, 166, 232
MaeI CTAG 2 cut(s) 123, 381
MaeIII GTNAC 2 cut(s) 100, 311
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 2 cut(s) 353, 406
MhlI GDGCHC 3 cut(s) 63, 401, 437
MluCI AATT 4 cut(s) 33, 307, 342, 408
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 5 cut(s) 141, 171, 203, 412, 434
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 3 cut(s) 66, 138, 147
MslI CAYNNNNRTG 3 cut(s) 194, 251, 389
MspCI CTTAAG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 1 cut(s) 40
NlaIII CATG 4 cut(s) 167, 206, 220, 272
NmuCI GTSAC 1 cut(s) 100
NspI RCATGY 2 cut(s) 206, 220
OliI CACNNNNGTG 2 cut(s) 194, 389
PagI TCATGA 1 cut(s) 268
PciI ACATGT 2 cut(s) 202, 216
PciSI GCTCTTC 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 357
PflMI CCANNNNNTGG 1 cut(s) 332
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PscI ACATGT 2 cut(s) 202, 216
Psp6I CCWGG 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 436
RseI CAYNNNNRTG 3 cut(s) 194, 251, 389
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 3 cut(s) 66, 138, 147
Sau3AI GATC 1 cut(s) 40
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 3 cut(s) 63, 401, 437
SetI ASST 3 cut(s) 66, 300, 404
SfaNI GCATC 3 cut(s) 70, 166, 232
SmiMI CAYNNNNRTG 3 cut(s) 194, 251, 389
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 4 cut(s) 33, 307, 342, 408
SsiI CCGC 1 cut(s) 15
SspMI CTAG 2 cut(s) 123, 381
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 94
TasI AATT 4 cut(s) 33, 307, 342, 408
Tru1I TTAA 3 cut(s) 66, 138, 147
Tru9I TTAA 3 cut(s) 66, 138, 147
TscAI CASTG 3 cut(s) 196, 293, 391
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 257, 269, 297
TspRI CASTG 3 cut(s) 196, 293, 391
Van91I CCANNNNNTGG 1 cut(s) 332
Vha464I CTTAAG 1 cut(s) 65
XapI RAATTY 1 cut(s) 33
XbaI TCTAGA 1 cut(s) 122
XceI RCATGY 2 cut(s) 206, 220
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 2 cut(s) 123, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.