pycom01g11360
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000357
Physical Location & Seq
Reverse (-)
12305816 .. 12307875
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11360.4

Sequence Viewer

Length: 912 bp
ATGTGGTGCGCATCAATGAGCCGAGTGCGGATTTTTCGAAGGCACGTGCGCACACACAATGGCGCACAAGTAAACACATTCAAGTGGCATTATCACAATTCAAATATAGACTGTCCAATGGCCCTGCAGCTGGAAGAAGAGGAAAACTTCTGCTATGCCATGCAGCTGGTGTTTTCTTCTGTTCTGTCCATGTCTATGCAATCAGCAATCGAGCTAGGCGTTTTCGACATCATAGCGAAAGCCGGTTCTGGCGCCAAACTGTCTTCATTGGAGATTGCAGCTCATATCGGCAGAGGCACCAGGAACTCTGAGGCACCGATGATGTTGGATCGTATTCTAAGGCTCCTTGCCAGTCACTCTATTCTCAGCTGCTCTGCTGCTGCTAATGAAGAAGACGGGTCTGATTCTCAGAGGCTCTACAGCCTTGGCCCTGTGTCCAACTACTTTGTGACTAATGAAGATGGTGTTTCTTTGGGTCCCTTGATGGCATTGATTCAAGACAAGGTCTTCCTAGACAGCTGGTCCCAACTGAAAGATGCAGTTGTTGAAGGAGGAATTCCATTTAACAAGGTCCATGGGACGCATGCTTTTGAGTATCCAGGTTTAGACCCCAGGTTTAATCAAGTTTTCAACACAGCAATGTTTCACCACACCACTATTGTCATGAAGAAGATTCTTCATCTCTACAAGGGTTTTGAGAAACTTACCCAACTTGTTGACGTTGGTGGTGGTTTGGGAGTCAATCTTAGTCTAATCACTTCTAAACATCCTCATATTAAGGGTATCAATTACGACTTGCCTCATGTCGTAAAACATGCGCCTTCATATCCTGGGGTGAAACATGTTGGAGGAGACATGTTTGCAAGTGTTCCATCTGGGGATGCCATTTTTATGAAGACGATGGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

304

Amino Acids

33.42

Weight (kDa)

7.29

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 10, 50
AccB1I GGYRCC 3 cut(s) 251, 296, 313
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 555
AcvI CACGTG 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 130
AflIII ACRYGT 2 cut(s) 841, 855
AgsI TTSAA 5 cut(s) 82, 102, 497, 548, 631
AhdI GACNNNNNGTC 1 cut(s) 520
AjnI CCWGG 4 cut(s) 299, 598, 611, 829
AluBI AGCT 6 cut(s) 130, 166, 214, 281, 369, 519
AluI AGCT 6 cut(s) 130, 166, 214, 281, 369, 519
Alw26I GTCTC 1 cut(s) 846
AlwI GGATC 1 cut(s) 336
AoxI GGCC 2 cut(s) 120, 427
ApeKI GCWGC 6 cut(s) 127, 163, 278, 369, 377, 380
ApoI RAATTY 1 cut(s) 555
AspLEI GCGC 5 cut(s) 11, 51, 65, 254, 820
AspS9I GGNCC 5 cut(s) 121, 428, 476, 522, 571
AsuHPI GGTGA 2 cut(s) 638, 847
AsuII TTCGAA 1 cut(s) 37
AvaII GGWCC 3 cut(s) 476, 522, 571
BanI GGYRCC 3 cut(s) 251, 296, 313
BbrPI CACGTG 1 cut(s) 46
BbsI GAAGAC 4 cut(s) 255, 399, 499, 902
BbvI GCAGC 6 cut(s) 139, 175, 290, 356, 364, 367
BccI CCATC 4 cut(s) 455, 478, 880, 895
BciT130I CCWGG 4 cut(s) 301, 600, 613, 831
BciVI GTATCC 1 cut(s) 606
BcoDI GTCTC 1 cut(s) 846
BfaI CTAG 2 cut(s) 215, 512
BfmI CTRYAG 2 cut(s) 125, 418
BfoI RGCGCY 1 cut(s) 255
BfuI GTATCC 1 cut(s) 606
BisI GCNGC 6 cut(s) 128, 164, 279, 370, 378, 381
BlsI GCNGC 6 cut(s) 129, 165, 280, 371, 379, 382
Bme1390I CCNGG 4 cut(s) 301, 600, 613, 831
Bme18I GGWCC 3 cut(s) 476, 522, 571
BmeRI GACNNNNNGTC 1 cut(s) 520
BmgT120I GGNCC 5 cut(s) 121, 428, 476, 522, 571
BmiI GGNNCC 7 cut(s) 253, 298, 315, 344, 477, 478, 524
BmrFI CCNGG 4 cut(s) 301, 600, 613, 831
BmsI GCATC 3 cut(s) 20, 526, 871
BpiI GAAGAC 4 cut(s) 255, 399, 499, 902
Bpu14I TTCGAA 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 4 cut(s) 424, 574, 611, 830
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 4 cut(s) 301, 600, 613, 831
BseDI CCNNGG 4 cut(s) 424, 574, 611, 830
BseGI GGATG 2 cut(s) 766, 886
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 3 cut(s) 300, 379, 422
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 864
BseXI GCAGC 6 cut(s) 139, 175, 290, 356, 364, 367
BshFI GGCC 2 cut(s) 122, 429
BshNI GGYRCC 3 cut(s) 251, 296, 313
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 3 cut(s) 462, 508, 592
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 846
BsmFI GGGAC 3 cut(s) 462, 508, 592
BsnI GGCC 2 cut(s) 122, 429
Bsp119I TTCGAA 1 cut(s) 37
Bsp143I GATC 1 cut(s) 328
Bsp19I CCATGG 1 cut(s) 574
BspACI CCGC 1 cut(s) 28
BspANI GGCC 2 cut(s) 122, 429
BspCNI CTCAG 3 cut(s) 301, 378, 421
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 7 cut(s) 253, 298, 315, 344, 477, 478, 524
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 37
BspT107I GGYRCC 3 cut(s) 251, 296, 313
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 4 cut(s) 424, 574, 611, 830
BssMI GATC 1 cut(s) 328
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 2 cut(s) 424, 574
Bst2UI CCWGG 4 cut(s) 301, 600, 613, 831
Bst4CI ACNGT 2 cut(s) 113, 261
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 5 cut(s) 309, 338, 365, 408, 746
BstDSI CCRYGG 1 cut(s) 574
BstF5I GGATG 2 cut(s) 766, 886
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 5 cut(s) 11, 51, 65, 254, 820
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 846
BstMBI GATC 1 cut(s) 328
BstNI CCWGG 4 cut(s) 301, 600, 613, 831
BstNSI RCATGY 4 cut(s) 587, 818, 845, 859
BstSCI CCNGG 4 cut(s) 299, 598, 611, 829
BstSFI CTRYAG 2 cut(s) 125, 418
BstV1I GCAGC 6 cut(s) 139, 175, 290, 356, 364, 367
BstV2I GAAGAC 4 cut(s) 255, 399, 499, 902
BstXI CCANNNNNNTGG 1 cut(s) 166
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 2 cut(s) 122, 429
BtgI CCRYGG 1 cut(s) 574
BtsCI GGATG 2 cut(s) 766, 886
Cac8I GCNNGC 1 cut(s) 585
CciI TCATGA 1 cut(s) 663
CfoI GCGC 5 cut(s) 11, 51, 65, 254, 820
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 5 cut(s) 121, 428, 476, 522, 571
CseI GACGC 1 cut(s) 589
CviAII CATG 9 cut(s) 160, 190, 575, 584, 664, 803, 815, 842, 856
DdeI CTNAG 5 cut(s) 309, 338, 365, 408, 746
DinI GGCGCC 1 cut(s) 253
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
DriI GACNNNNNGTC 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 132
Eam1105I GACNNNNNGTC 1 cut(s) 520
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 424, 574
Eco47I GGWCC 3 cut(s) 476, 522, 571
Eco72I CACGTG 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 476
EcoRI GAATTC 1 cut(s) 555
EcoRII CCWGG 4 cut(s) 299, 598, 611, 829
EcoT14I CCWWGG 2 cut(s) 424, 574
EgeI GGCGCC 1 cut(s) 253
EheI GGCGCC 1 cut(s) 253
ErhI CCWWGG 2 cut(s) 424, 574
FaeI CATG 9 cut(s) 163, 193, 578, 587, 667, 806, 818, 845, 859
FaqI GGGAC 3 cut(s) 462, 508, 592
FatI CATG 9 cut(s) 159, 189, 574, 583, 663, 802, 814, 841, 855
Fnu4HI GCNGC 6 cut(s) 128, 164, 279, 370, 378, 381
FokI GGATG 2 cut(s) 753, 893
Fsp4HI GCNGC 6 cut(s) 128, 164, 279, 370, 378, 381
FspAI RTGCGCAY 2 cut(s) 10, 50
FspBI CTAG 2 cut(s) 215, 512
FspI TGCGCA 2 cut(s) 10, 50
GlaI GCGC 5 cut(s) 10, 50, 64, 253, 819
GluI GCNGC 6 cut(s) 128, 164, 279, 370, 378, 381
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 2 cut(s) 122, 429
HapII CCGG 1 cut(s) 243
HgaI GACGC 1 cut(s) 589
HhaI GCGC 5 cut(s) 11, 51, 65, 254, 820
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 9 cut(s) 163, 193, 578, 587, 667, 806, 818, 845, 859
Hin6I GCGC 5 cut(s) 9, 49, 63, 252, 818
HinP1I GCGC 5 cut(s) 9, 49, 63, 252, 818
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HinfI GANTC 4 cut(s) 404, 493, 673, 738
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 638, 847
Hpy166II GTNNAC 2 cut(s) 73, 718
Hpy188I TCNGA 3 cut(s) 310, 403, 411
Hpy188III TCNNGA 2 cut(s) 497, 664
Hpy8I GTNNAC 2 cut(s) 73, 718
HpyAV CCTTC 3 cut(s) 33, 542, 831
HpyCH4III ACNGT 2 cut(s) 113, 261
HpyCH4IV ACGT 2 cut(s) 45, 720
HpyCH4V TGCA 6 cut(s) 127, 163, 199, 278, 539, 863
HpyF3I CTNAG 5 cut(s) 309, 338, 365, 408, 746
HpySE526I ACGT 2 cut(s) 45, 720
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 9 cut(s) 163, 193, 578, 587, 667, 806, 818, 845, 859
HspAI GCGC 5 cut(s) 9, 49, 63, 252, 818
KasI GGCGCC 1 cut(s) 251
KflI GGGWCCC 1 cut(s) 476
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 348
Lsp1109I GCAGC 6 cut(s) 139, 175, 290, 356, 364, 367
LweI GCATC 3 cut(s) 20, 526, 871
MaeI CTAG 2 cut(s) 215, 512
MaeII ACGT 2 cut(s) 45, 720
MaeIII GTNAC 2 cut(s) 353, 448
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MluCI AATT 3 cut(s) 97, 555, 787
Mly113I GGCGCC 1 cut(s) 252
MlyI GAGTC 1 cut(s) 747
MmeI TCCRAC 3 cut(s) 306, 462, 826
MnlI CCTC 8 cut(s) 133, 287, 304, 405, 545, 780, 810, 842
MseI TTAA 3 cut(s) 564, 618, 777
MslI CAYNNNNRTG 4 cut(s) 82, 194, 638, 890
MspA1I CMGCKG 4 cut(s) 130, 166, 369, 519
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 4 cut(s) 301, 600, 613, 831
MvaI CCWGG 4 cut(s) 301, 600, 613, 831
NarI GGCGCC 1 cut(s) 252
NcoI CCATGG 1 cut(s) 574
NdeII GATC 1 cut(s) 328
NlaIII CATG 9 cut(s) 163, 193, 578, 587, 667, 806, 818, 845, 859
NlaIV GGNNCC 7 cut(s) 253, 298, 315, 344, 477, 478, 524
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 2 cut(s) 353, 448
NsbI TGCGCA 2 cut(s) 10, 50
NspI RCATGY 4 cut(s) 587, 818, 845, 859
NspV TTCGAA 1 cut(s) 37
PaeI GCATGC 1 cut(s) 587
PagI TCATGA 1 cut(s) 663
PciI ACATGT 2 cut(s) 841, 855
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 3 cut(s) 404, 493, 673
PflFI GACNNNGTC 1 cut(s) 503
PkrI GCNGC 6 cut(s) 129, 165, 280, 371, 379, 382
PleI GAGTC 1 cut(s) 746
PluTI GGCGCC 1 cut(s) 255
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
PpsI GAGTC 1 cut(s) 746
Ppu21I YACGTR 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 476
PscI ACATGT 2 cut(s) 841, 855
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 4 cut(s) 299, 598, 611, 829
PspCI CACGTG 1 cut(s) 46
PspGI CCWGG 4 cut(s) 299, 598, 611, 829
PspN4I GGNNCC 7 cut(s) 253, 298, 315, 344, 477, 478, 524
PspPI GGNCC 5 cut(s) 121, 428, 476, 522, 571
PspPPI RGGWCCY 1 cut(s) 476
PstI CTGCAG 1 cut(s) 129
PsyI GACNNNGTC 1 cut(s) 503
PvuII CAGCTG 4 cut(s) 130, 166, 369, 519
RseI CAYNNNNRTG 4 cut(s) 82, 194, 638, 890
SaqAI TTAA 3 cut(s) 564, 618, 777
SatI GCNGC 6 cut(s) 128, 164, 279, 370, 378, 381
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 5 cut(s) 121, 428, 476, 522, 571
SchI GAGTC 1 cut(s) 747
ScrFI CCNGG 4 cut(s) 301, 600, 613, 831
SfaNI GCATC 3 cut(s) 20, 526, 871
SfcI CTRYAG 2 cut(s) 125, 418
SfoI GGCGCC 1 cut(s) 253
SfuI TTCGAA 1 cut(s) 37
SinI GGWCC 3 cut(s) 476, 522, 571
SmiMI CAYNNNNRTG 4 cut(s) 82, 194, 638, 890
SphI GCATGC 1 cut(s) 587
Sse9I AATT 3 cut(s) 97, 555, 787
SsiI CCGC 1 cut(s) 28
SspDI GGCGCC 1 cut(s) 251
SspMI CTAG 2 cut(s) 215, 512
StyD4I CCNGG 4 cut(s) 299, 598, 611, 829
StyI CCWWGG 2 cut(s) 424, 574
TaaI ACNGT 2 cut(s) 113, 261
TaiI ACGT 2 cut(s) 48, 723
TaqI TCGA 3 cut(s) 37, 210, 225
TasI AATT 3 cut(s) 97, 555, 787
TfiI GAWTC 3 cut(s) 404, 493, 673
Tru1I TTAA 3 cut(s) 564, 618, 777
Tru9I TTAA 3 cut(s) 564, 618, 777
TseFI GTSAC 2 cut(s) 353, 448
TseI GCWGC 6 cut(s) 127, 163, 278, 369, 377, 380
Tsp45I GTSAC 2 cut(s) 353, 448
TspDTI ATGAA 7 cut(s) 255, 402, 471, 668, 680, 813, 908
Tth111I GACNNNGTC 1 cut(s) 503
VpaK11BI GGWCC 3 cut(s) 476, 522, 571
XapI RAATTY 1 cut(s) 555
XceI RCATGY 4 cut(s) 587, 818, 845, 859
XspI CTAG 2 cut(s) 215, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.