Rh1CG280000
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000357
Physical Location & Seq
Reverse (-)
55082780 .. 55091289
8510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG280000.1

Sequence Viewer

Length: 672 bp
ATGCAGCTGGTGACTTCCACTGTGCTGTCTATGTCCACGCAATTAGCAGTTGAGCTTGGAGTTTTCGACATCATAGCCAAAGCTGGTGCGGGTGCGGGTCTCTCCTCATCGCAGATAGCAGCTCAGATAGGCACCGAGAACCCCGATGCGCCCATGATGTTGGATCAGATCCTCAGGCTACTGGCAAGTCACTCTGTGCTCAATTGTACTGTGGTTAATGCTAATGATGATGATTATAGTGATGGGCCTAATTTTCAGAGGGTTTATAGTCTTACTCCTGTGTCCAAGTACTTTGTGAAGAGTGATGAAGATGGTGTTTCTTTAGGCGCCATGATGGCGTTGATTCAAGACAAGGTCTTCTTGGACAGCTGGCGAGACTCTTCGTTGTGGGGGTCGAACATTTTGTCGGACTTTGTTTCTACGTTGGGTGGTGTGTTTTGGCAGGGATTTCTGGTAGCTTCCAAATTAGATAAAGATCGATCTGTGGATCCTTGGTGGCAGCAATGTATCATTTCTATCTATTGCGGCTTTGGTAGCGGGTTTTTACCTGCATCCCTTGTTTGGAAGTCAAACTGCACAGTTGCACGGTTTTTTGGTGGATCACCTCCTGCAACGTTTGTTTGGCTCGGTGGTCATGCCGGAACTGTGGTTGCACTACTGATTGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

223

Amino Acids

23.84

Weight (kDa)

4.57

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 1 - 101 1.2e-18 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccB1I GGYRCC 2 cut(s) 131, 326
AciI CCGC 4 cut(s) 89, 95, 525, 537
AclI AACGTT 1 cut(s) 614
AclWI GGATC 5 cut(s) 163, 171, 482, 495, 607
AcyI GRCGYC 1 cut(s) 327
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 208, 290
AfiI CCNNNNNNNGG 1 cut(s) 561
AgsI TTSAA 1 cut(s) 347
AluBI AGCT 6 cut(s) 7, 55, 83, 122, 369, 458
AluI AGCT 6 cut(s) 7, 55, 83, 122, 369, 458
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 2 cut(s) 104, 369
AlwI GGATC 5 cut(s) 163, 171, 482, 495, 607
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 4, 119, 499
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 2 cut(s) 151, 329
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 22, 594
AxyI CCTNAGG 1 cut(s) 173
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 2 cut(s) 131, 326
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 16, 131, 511
BccI CCATC 3 cut(s) 236, 305, 328
BcoDI GTCTC 2 cut(s) 104, 369
BfoI RGCGCY 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 556
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 4 cut(s) 5, 120, 500, 526
BlsI GCNGC 4 cut(s) 6, 121, 501, 527
BmcAI AGTACT 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 3 cut(s) 133, 328, 489
BmsI GCATC 2 cut(s) 136, 560
BpiI GAAGAC 1 cut(s) 349
Bsa29I ATCGAT 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 491
Bsc4I CCNNNNNNNGG 1 cut(s) 561
Bse1I ACTGG 1 cut(s) 186
Bse21I CCTNAGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 509
Bse8I GATNNNNATC 1 cut(s) 474
BseCI ATCGAT 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 1 cut(s) 551
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 561
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 2 cut(s) 137, 187
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 16, 131, 511
BsgI GTGCAG 1 cut(s) 559
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 2 cut(s) 131, 326
BshVI ATCGAT 1 cut(s) 478
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 639
BslI CCNNNNNNNGG 1 cut(s) 561
BsmAI GTCTC 2 cut(s) 104, 369
BsnI GGCC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 6 cut(s) 163, 168, 475, 479, 487, 599
BspACI CCGC 4 cut(s) 89, 95, 525, 537
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 2 cut(s) 136, 186
BspDI ATCGAT 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 133, 328, 489
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 5 cut(s) 163, 171, 482, 495, 607
BspT107I GGYRCC 2 cut(s) 131, 326
BspTNI GGTCTC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 6 cut(s) 163, 168, 475, 479, 487, 599
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 491
Bst4CI ACNGT 5 cut(s) 22, 211, 580, 588, 646
Bst6I CTCTTC 2 cut(s) 293, 385
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 123, 173
BstF5I GGATG 1 cut(s) 551
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 2 cut(s) 151, 329
BstKTI GATC 6 cut(s) 166, 171, 478, 482, 490, 602
BstMAI GTCTC 2 cut(s) 104, 369
BstMBI GATC 6 cut(s) 163, 168, 475, 479, 487, 599
BstMWI GCNNNNNNNGC 2 cut(s) 335, 534
BstV1I GCAGC 3 cut(s) 16, 131, 511
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 2 cut(s) 168, 487
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 2 cut(s) 168, 487
Bsu15I ATCGAT 1 cut(s) 478
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 247
BsuTUI ATCGAT 1 cut(s) 478
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 551
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 1 cut(s) 371
CfoI GCGC 2 cut(s) 151, 329
Cfr13I GGNCC 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 478
Csp6I GTAC 2 cut(s) 207, 289
CviAII CATG 3 cut(s) 154, 331, 635
CviQI GTAC 2 cut(s) 207, 289
DdeI CTNAG 2 cut(s) 123, 173
DinI GGCGCC 1 cut(s) 328
DpnI GATC 6 cut(s) 165, 170, 477, 481, 489, 601
DpnII GATC 6 cut(s) 163, 168, 475, 479, 487, 599
DraIII CACNNNGTG 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 293, 385
EarI CTCTTC 2 cut(s) 293, 385
Eco130I CCWWGG 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 104
Eco81I CCTNAGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 491
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 491
FaeI CATG 3 cut(s) 157, 334, 638
FaiI YATR 7 cut(s) 32, 74, 155, 237, 267, 332, 636
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 3 cut(s) 153, 330, 634
FauI CCCGC 3 cut(s) 82, 88, 530
Fnu4HI GCNGC 4 cut(s) 5, 120, 500, 526
FokI GGATG 1 cut(s) 538
Fsp4HI GCNGC 4 cut(s) 5, 120, 500, 526
GlaI GCGC 2 cut(s) 150, 328
GluI GCNGC 4 cut(s) 5, 120, 500, 526
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 1 cut(s) 247
HapII CCGG 1 cut(s) 639
HhaI GCGC 2 cut(s) 151, 329
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 3 cut(s) 157, 334, 638
Hin6I GCGC 2 cut(s) 149, 327
HinP1I GCGC 2 cut(s) 149, 327
HinfI GANTC 2 cut(s) 343, 377
HpaII CCGG 1 cut(s) 639
HphI GGTGA 2 cut(s) 22, 594
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 4 cut(s) 126, 168, 258, 409
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 36
HpyCH4III ACNGT 5 cut(s) 22, 211, 580, 588, 646
HpyCH4IV ACGT 2 cut(s) 422, 614
HpyCH4V TGCA 6 cut(s) 4, 551, 576, 584, 611, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 534
HpyF3I CTNAG 2 cut(s) 123, 173
HpySE526I ACGT 2 cut(s) 422, 614
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 3 cut(s) 157, 334, 638
HspAI GCGC 2 cut(s) 149, 327
KasI GGCGCC 1 cut(s) 326
Kzo9I GATC 6 cut(s) 163, 168, 475, 479, 487, 599
Lsp1109I GCAGC 3 cut(s) 16, 131, 511
LweI GCATC 2 cut(s) 136, 560
MaeII ACGT 2 cut(s) 422, 614
MaeIII GTNAC 2 cut(s) 10, 188
MalI GATC 6 cut(s) 165, 170, 477, 481, 489, 601
MboI GATC 6 cut(s) 163, 168, 475, 479, 487, 599
MboII GAAGA 4 cut(s) 310, 320, 349, 372
MfeI CAATTG 1 cut(s) 202
MflI RGATCY 2 cut(s) 168, 487
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 41, 202, 250, 464
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 141, 387
MnlI CCTC 4 cut(s) 115, 182, 252, 615
MseI TTAA 2 cut(s) 216, 670
MspA1I CMGCKG 2 cut(s) 7, 369
MspI CCGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 335, 534
NarI GGCGCC 1 cut(s) 327
NdeII GATC 6 cut(s) 163, 168, 475, 479, 487, 599
NlaIII CATG 3 cut(s) 157, 334, 638
NlaIV GGNNCC 3 cut(s) 133, 328, 489
NmuCI GTSAC 2 cut(s) 10, 188
PfeI GAWTC 1 cut(s) 343
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 4 cut(s) 6, 121, 501, 527
PleI GAGTC 1 cut(s) 371
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 371
Psp1406I AACGTT 1 cut(s) 614
PspN4I GGNNCC 3 cut(s) 133, 328, 489
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 2 cut(s) 168, 487
PsyI GACNNNGTC 1 cut(s) 353
PvuII CAGCTG 2 cut(s) 7, 369
RsaI GTAC 2 cut(s) 208, 290
RsaNI GTAC 2 cut(s) 207, 289
SaqAI TTAA 2 cut(s) 216, 670
SatI GCNGC 4 cut(s) 5, 120, 500, 526
Sau3AI GATC 6 cut(s) 163, 168, 475, 479, 487, 599
Sau96I GGNCC 1 cut(s) 245
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 1 cut(s) 371
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 2 cut(s) 136, 560
SfoI GGCGCC 1 cut(s) 328
Sse9I AATT 4 cut(s) 41, 202, 250, 464
SsiI CCGC 4 cut(s) 89, 95, 525, 537
SspDI GGCGCC 1 cut(s) 326
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 5 cut(s) 22, 211, 580, 588, 646
TaiI ACGT 2 cut(s) 425, 617
TaqI TCGA 3 cut(s) 66, 395, 478
TasI AATT 4 cut(s) 41, 202, 250, 464
TatI WGTACW 2 cut(s) 206, 288
TauI GCSGC 1 cut(s) 528
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 216, 670
Tru9I TTAA 2 cut(s) 216, 670
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 2 cut(s) 10, 188
TseI GCWGC 3 cut(s) 4, 119, 499
Tsp45I GTSAC 2 cut(s) 10, 188
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 353
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.