Rorug01G0287600
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
40225722 .. 40228623
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0287600.1

Sequence Viewer

Length: 552 bp
ATGTCTTCCCCAAGCAAACGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGACATGATCAATGATGGAATGCATGAGTTCTATGTAGATTTCCATGGACCCAGCGAGAGTCCTTATCAGGGAGGCGTGTGGAGGATAAGAGTTGAACTACCAGATGCTTATCCCTATAAATCTCCCTCAATAGGCTTTATCAATAAGATCTACCACCCAAATGTTGATGAGATGTCAGGTTCGGTTTGCTTAGATGTTATCAATCAAACGTGGAGCCCCATGTTTGATTTGGTAAATGTATTTGAAGTATTCCTGCCACAGCTTCTGCTGTATCCCAATCCATCAGACCCTTTAAATGGAGAGGCTGCAGCTTTAATGATGCGTGACCGAGCTTCTTATGAACAAAGAGTCAAAGAATACTGTCTGAAGTATGCCAAGCCTGAAGATATAGGAGCTGTCCCAGAAGACAAATCAAGTGATGAAGAACTGAGTGAAGATGAATCTGATTCCTGTGATGACCAAGTGGCCGGTCAAGCTGATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

20.84

Weight (kDa)

4.34

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 9 - 142 4.7e-40 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 539
AcoI YGGCCR 1 cut(s) 531
AcuI CTGAAG 2 cut(s) 452, 468
AfiI CCNNNNNNNGG 3 cut(s) 134, 197, 362
AgsI TTSAA 2 cut(s) 161, 311
AluBI AGCT 5 cut(s) 328, 377, 398, 461, 542
AluI AGCT 5 cut(s) 328, 377, 398, 461, 542
AlwI GGATC 1 cut(s) 539
AlwNI CAGNNNCTG 1 cut(s) 331
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 2 cut(s) 371, 374
AspS9I GGNCC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 358, 386
BccI CCATC 3 cut(s) 22, 74, 355
BciVI GTATCC 1 cut(s) 348
BclI TGATCA 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 372
BfuI GTATCC 1 cut(s) 348
BglII AGATCT 1 cut(s) 213
BisI GCNGC 2 cut(s) 372, 375
BlsI GCNGC 2 cut(s) 373, 376
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 115, 281
BmsI GCATC 2 cut(s) 160, 375
BpiI GAAGAC 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 197, 362
Bse118I RCCGGY 1 cut(s) 533
Bse8I GATNNNNATC 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 109
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 3 cut(s) 134, 197, 362
BseMII CTCAG 1 cut(s) 485
BseXI GCAGC 2 cut(s) 358, 386
BseYI CCCAGC 1 cut(s) 116
BshFI GGCC 1 cut(s) 533
BsiSI CCGG 1 cut(s) 534
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 3 cut(s) 134, 197, 362
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 3 cut(s) 72, 213, 544
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 1 cut(s) 486
BspLI GGNNCC 2 cut(s) 115, 281
BspMAI CTGCAG 1 cut(s) 376
BspPI GGATC 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 533
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 3 cut(s) 72, 213, 544
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 428
BstDEI CTNAG 2 cut(s) 256, 494
BstDSI CCRYGG 1 cut(s) 109
BstKTI GATC 3 cut(s) 75, 216, 547
BstMBI GATC 3 cut(s) 72, 213, 544
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 358, 386
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 533
BtgI CCRYGG 1 cut(s) 109
CaiI CAGNNNCTG 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 4 cut(s) 70, 89, 110, 286
DdeI CTNAG 2 cut(s) 256, 494
DpnI GATC 3 cut(s) 74, 215, 546
DpnII GATC 3 cut(s) 72, 213, 544
DraI TTTAAA 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 452, 468
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 73, 92, 113, 289
FaqI GGGAC 1 cut(s) 449
FatI CATG 4 cut(s) 69, 88, 109, 285
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 372, 375
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 372, 375
GluI GCNGC 2 cut(s) 372, 375
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 533
HapII CCGG 1 cut(s) 534
Hin1II CATG 4 cut(s) 73, 92, 113, 289
HinfI GANTC 4 cut(s) 124, 414, 506, 512
HpaII CCGG 1 cut(s) 534
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 3 cut(s) 352, 432, 511
Hpy8I GTNNAC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 88, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 2 cut(s) 256, 494
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 4 cut(s) 73, 92, 113, 289
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 3 cut(s) 72, 213, 544
LmnI GCTCC 2 cut(s) 279, 458
LpnPI CCDG 9 cut(s) 119, 130, 180, 228, 332, 459, 480, 529, 547
Lsp1109I GCAGC 2 cut(s) 358, 386
LweI GCATC 2 cut(s) 160, 375
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 389
MalI GATC 3 cut(s) 74, 215, 546
MboI GATC 3 cut(s) 72, 213, 544
MboII GAAGA 4 cut(s) 461, 482, 500, 512
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 284
MlyI GAGTC 2 cut(s) 133, 423
MnlI CCTC 4 cut(s) 131, 141, 202, 361
Mph1103I ATGCAT 1 cut(s) 90
MseI TTAA 2 cut(s) 359, 380
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 534
Mva1269I GAATGC 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 539
NcoI CCATGG 1 cut(s) 109
NdeII GATC 3 cut(s) 72, 213, 544
NlaIII CATG 4 cut(s) 73, 92, 113, 289
NlaIV GGNNCC 2 cut(s) 115, 281
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 90
PctI GAATGC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 506, 512
PkrI GCNGC 2 cut(s) 373, 376
PleI GAGTC 2 cut(s) 132, 422
PpsI GAGTC 2 cut(s) 132, 422
PspFI CCCAGC 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 115, 281
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 2 cut(s) 359, 380
SatI GCNGC 2 cut(s) 372, 375
Sau3AI GATC 3 cut(s) 72, 213, 544
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 2 cut(s) 133, 423
SduI GDGCHC 1 cut(s) 284
SetI ASST 8 cut(s) 66, 247, 278, 330, 379, 400, 463, 544
SfaNI GCATC 2 cut(s) 160, 375
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 1 cut(s) 278
TaqII GACCGA 1 cut(s) 408
TfiI GAWTC 2 cut(s) 506, 512
Tru1I TTAA 2 cut(s) 359, 380
Tru9I TTAA 2 cut(s) 359, 380
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 2 cut(s) 371, 374
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 53, 420, 501, 519
VpaK11BI GGWCC 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.