Rroxscaffold_2G00116370
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
43497664 .. 43499515
1852 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00116370.1

Sequence Viewer

Length: 468 bp
ATGGCCTCTTCACTGGAAACAAAACCCCAAGCCATAGTTCTTGACGATGAAAGAAAGCAAGAAGAAGAAAGCTTTCATTATGCTGTGCAGCTGGTGGTTTCATCTGCGCTGCCCATGTCCATGCAATCAGCCATTGAGCTCGGACTTTTTGATATCATAGCCAGAGCAGGTTCGGGTGCGGGGCTCTCTGCATCCCAGATTGCTGCCCAAATTGGCACCCAGAATTCTGAGGCATCCTTTATGCTGGATCGAATCCTTGGGCTCCTCGCCACTCACTCTGTACTTGGTTGTTCTCTGGCTCATTATATGGAGATATCCATATCTTACCAATTTACACTCACAATAGCCATCAAAGCGAGTACAATTGTCTTTGTTGCTGCTGTTGTCATTTGCCTCTTGAGGACCAAACATACTCTGACCATCTTGGTGGCTCTTGATGTTCACGACATTTGTTCAAGGCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

16.68

Weight (kDa)

5.41

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 30 - 99 5.5e-13 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 255
AcsI RAATTY 1 cut(s) 223
AfaI GTAC 2 cut(s) 282, 361
AgsI TTSAA 1 cut(s) 456
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 3 cut(s) 72, 91, 139
AluI AGCT 3 cut(s) 72, 91, 139
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 1 cut(s) 255
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 88, 109, 203, 377
ApoI RAATTY 1 cut(s) 223
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 402
AvaII GGWCC 1 cut(s) 402
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 3 cut(s) 141, 186, 264
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 4 cut(s) 96, 100, 190, 364
BccI CCATC 2 cut(s) 356, 428
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 4 cut(s) 89, 110, 204, 378
BlsI GCNGC 4 cut(s) 90, 111, 205, 379
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 2 cut(s) 217, 263
BmsI GCATC 2 cut(s) 200, 242
BpuEI CTTGAG 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 2 cut(s) 191, 233
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 4 cut(s) 96, 100, 190, 364
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 141
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 3 cut(s) 141, 186, 264
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 217, 263
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 191, 233
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstV1I GCAGC 4 cut(s) 96, 100, 190, 364
BstXI CCANNNNNNTGG 1 cut(s) 427
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 191, 233
BtsIMutI CAGTG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 402
Csp6I GTAC 2 cut(s) 281, 360
CviAII CATG 3 cut(s) 115, 121, 461
CviQI GTAC 2 cut(s) 281, 360
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 256
Eco24I GRGCYC 3 cut(s) 141, 186, 264
Eco32I GATATC 2 cut(s) 154, 315
Eco47I GGWCC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 223
EcoRV GATATC 2 cut(s) 154, 315
EcoT14I CCWWGG 1 cut(s) 256
EcoT38I GRGCYC 3 cut(s) 141, 186, 264
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 3 cut(s) 118, 124, 464
FatI CATG 3 cut(s) 114, 120, 460
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 89, 110, 204, 378
FokI GGATG 2 cut(s) 178, 220
FriOI GRGCYC 3 cut(s) 141, 186, 264
Fsp4HI GCNGC 4 cut(s) 89, 110, 204, 378
GlaI GCGC 1 cut(s) 108
GluI GCNGC 4 cut(s) 89, 110, 204, 378
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 109
Hin1II CATG 3 cut(s) 118, 124, 464
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 143, 229, 417
Hpy188III TCNNGA 4 cut(s) 41, 397, 434, 443
Hpy8I GTNNAC 1 cut(s) 442
HpyCH4V TGCA 3 cut(s) 88, 124, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 3 cut(s) 118, 124, 464
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 7 cut(s) 77, 153, 175, 209, 230, 233, 281
Lsp1109I GCAGC 4 cut(s) 96, 100, 190, 364
LweI GCATC 2 cut(s) 200, 242
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 2 cut(s) 74, 77
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 3 cut(s) 141, 186, 264
MluCI AATT 4 cut(s) 210, 223, 329, 363
MnlI CCTC 5 cut(s) 16, 223, 275, 393, 404
MroXI GAANNNNTTC 1 cut(s) 72
MslI CAYNNNNRTG 2 cut(s) 119, 425
MspA1I CMGCKG 1 cut(s) 91
MunI CAATTG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 1 cut(s) 247
NlaIII CATG 3 cut(s) 118, 124, 464
NlaIV GGNNCC 2 cut(s) 217, 263
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 4 cut(s) 90, 111, 205, 379
Psp124BI GAGCTC 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 217, 263
PspPI GGNCC 1 cut(s) 402
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 2 cut(s) 282, 361
RsaNI GTAC 2 cut(s) 281, 360
RseI CAYNNNNRTG 2 cut(s) 119, 425
SacI GAGCTC 1 cut(s) 141
SatI GCNGC 4 cut(s) 89, 110, 204, 378
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 402
SduI GDGCHC 3 cut(s) 141, 186, 264
SetI ASST 4 cut(s) 74, 93, 141, 172
SfaNI GCATC 2 cut(s) 200, 242
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 119, 425
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 4 cut(s) 210, 223, 329, 363
SsiI CCGC 1 cut(s) 179
SstI GAGCTC 1 cut(s) 141
StyI CCWWGG 1 cut(s) 256
TaqI TCGA 1 cut(s) 250
TasI AATT 4 cut(s) 210, 223, 329, 363
TatI WGTACW 2 cut(s) 280, 359
TfiI GAWTC 1 cut(s) 252
TscAI CASTG 1 cut(s) 18
TseI GCWGC 4 cut(s) 88, 109, 203, 377
TspDTI ATGAA 3 cut(s) 63, 65, 90
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.