Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027455.1

Orthogroup ID

OG0010937

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 535

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027455.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 347 bp

atgatgacagccacatcaacggcgctaatccagcgcgtgtgctccgtccccctcgcgtgtgccgtccgtactcgcgccttggccaccaccaccaccatgaacctctccaccactcctactccacgcgcctccccggccgactcgcgcgtcctgctcggcttgtccgaaccggaactccagcagctcgcccttgacttcagtcagcaaggctacagaggcaagcagcttcatcatctcatttacaaaagaaagattaaagacattcaggatttcagtcaagtgcctctggcattcaggaatgagcttgaggaagctggatggaaggttgggaggtcacctatttacaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer4_14 Radical_SAM

Protein Analysis

115

Amino Acids

12.8

Weight (kDa)

9.62

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39670 AT2G39670
fragaria_vesca	FvH4_7g22600
malus_domestica	MD07G1012700.v1.1 MD07G1199600.v1.1
prunus_persica	Prupe.2G236300_v2.0.a1
pyrus_communis	pycom07g01040 pycom07g18640
rosa_chinensis	RchiOBHm_Chr1g0367701
rosa_laevigata	RLG00000027269
rosa_multiflora	Rmu_sc0008470.1_g000011 Rmu_sc0022951.1_g000001 Rmu_sc0027455.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289290
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343200 Rh1BG304900 Rh1CG320600 Rh1DG337200
rosa_wichuraiana	Rw1G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccII	CGCG	6 cut(s)	36, 56, 75, 126, 145, 147
AcoI	YGGCCR	2 cut(s)	81, 135
AcuI	CTGAAG	1 cut(s)	181
AfaI	GTAC	1 cut(s)	70
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	4 cut(s)	184, 226, 304, 314
AluI	AGCT	4 cut(s)	184, 226, 304, 314
Alw21I	GWGCWC	1 cut(s)	44
AoxI	GGCC	2 cut(s)	81, 135
ApeKI	GCWGC	2 cut(s)	181, 223
AspLEI	GCGC	5 cut(s)	25, 36, 77, 128, 147
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	193, 235
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	2 cut(s)	36, 47
BcnI	CCSGG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	26
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	182, 224
BlsI	GCNGC	2 cut(s)	183, 225
Bme1390I	CCNGG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	134
BoxI	GACNNNNGTC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	78, 132
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 159, 189
BseDI	CCNNGG	2 cut(s)	78, 132
BseGI	GGATG	1 cut(s)	323
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	193, 235
Bsh1236I	CGCG	6 cut(s)	36, 56, 75, 126, 145, 147
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	83, 137
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	134, 170
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	83, 137
Bsp1286I	GDGCHC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	83, 137
BspFNI	CGCG	6 cut(s)	36, 56, 75, 126, 145, 147
BssECI	CCNNGG	2 cut(s)	78, 132
BssT1I	CCWWGG	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	186, 221
BstEII	GGTNACC	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	323
BstFNI	CGCG	6 cut(s)	36, 56, 75, 126, 145, 147
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	5 cut(s)	25, 36, 77, 128, 147
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 134, 151, 216
BstPAI	GACNNNNGTC	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	6 cut(s)	36, 56, 75, 126, 145, 147
BstV1I	GCAGC	2 cut(s)	193, 235
BstZI	CGGCCG	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	83, 137
BtsCI	GGATG	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	186, 221
CfoI	GCGC	5 cut(s)	25, 36, 77, 128, 147
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	9 cut(s)	11, 83, 137, 159, 184, 210, 226, 304, 314
CviKI_1	RGCY	9 cut(s)	11, 83, 137, 159, 184, 210, 226, 304, 314
CviQI	GTAC	1 cut(s)	69
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	81, 135
EagI	CGGCCG	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	181
Eco91I	GGTNACC	1 cut(s)	333
EcoO65I	GGTNACC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	100
FaiI	YATR	1 cut(s)	98
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	182, 224
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	182, 224
GlaI	GCGC	5 cut(s)	24, 35, 76, 127, 146
GluI	GCNGC	2 cut(s)	182, 224
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	83, 137
HapII	CCGG	2 cut(s)	134, 170
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	5 cut(s)	25, 36, 77, 128, 147
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	5 cut(s)	23, 34, 75, 126, 145
HinP1I	GCGC	5 cut(s)	23, 34, 75, 126, 145
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	2 cut(s)	134, 170
HphI	GGTGA	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	266, 295
HpyAV	CCTTC	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 134, 151, 216
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	5 cut(s)	23, 34, 75, 126, 145
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	9 cut(s)	44, 147, 164, 183, 191, 251, 272, 280, 300
Lsp1109I	GCAGC	2 cut(s)	193, 235
MaeIII	GTNAC	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	7 cut(s)	62, 113, 139, 209, 294, 301, 324
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	2 cut(s)	134, 170
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	290
MvnI	CGCG	6 cut(s)	36, 56, 75, 126, 145, 147
MwoI	GCNNNNNNNGC	4 cut(s)	31, 134, 151, 216
NciI	CCSGG	1 cut(s)	134
NlaIII	CATG	1 cut(s)	100
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 162
PctI	GAATGC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	183, 225
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PshAI	GACNNNNGTC	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	333
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	182, 224
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	8 cut(s)	105, 186, 228, 306, 316, 327, 335, 340
SfcI	CTRYAG	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	2 cut(s)	181, 223
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	113, 218
TspGWI	ACGGA	2 cut(s)	34, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.