Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012654

Physical Location & Seq

Genomic Coordinates Forward (+)

19405827 .. 19406881

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGACATCATTTCCCGGCAACAACCGCCGCAGCAGTCGAGCCTGAACCCCAACGCTCCGATGTTCGTTCCCTCGGCGTATCGGGCGGTGGAGGATTTCTCCACCGAATGGTGGGCCCTTGTCCAGTCGTCCCCTTGGTTCCGTGACTACTGGCTCCAGGAGAATTTCCATGACCCACAAAACGACCCCTTCTTTTCTGATGTTAACGACGCCGCCTTCCTCGACGACTCCGACTACATCGACGACCTCTTCGACGAGCAGCACTACCCCACCGCCGACAACAAAACAGAGGTCGAGGCGGAGGAAGAGGAGAAAGACTATCACAAGGAGCTGGTTTCGCTGGGGCTGTTGAAGTGGCCGAAGGGCCGACCTGTGGCGAACGCGCCGAGGTTTATTGAGAAAGCTCCGAAGTTTGTTAATGTCAAAGTGAGTCCCAGAGCGATTCAGCAGCCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

153

Amino Acids

17.76

Weight (kDa)

4.54

Isoelectric Point (pI)

65.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25400 FvH4_7g25400 FvH4_7g25400
malus_domestica	MD01G1160300.v1.1 MD07G1228500.v1.1
prunus_persica	Prupe.2G258200_v2.0.a1 Prupe.2G258200_v2.0.a1
pyrus_communis	pycom07g20690
rosa_chinensis	RchiOBHm_Chr1g0371351
rosa_laevigata	RLG00000026969
rosa_multiflora	Rmu_sc0000809.1_g000037
rosa_roxburghii	Rroxscaffold_4G00285770
rosa_rugosa	Rorug01G0363300 Rorug01G0363300 Rorug01G0363300
rosa_samantha	Rh1AG373300 Rh1BG336800 Rh1CG350100
rosa_wichuraiana	Rw1G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccII	CGCG	1 cut(s)	383
AciI	CCGC	6 cut(s)	26, 29, 86, 213, 273, 299
AcoI	YGGCCR	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	3 cut(s)	108, 111, 373
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	331, 404
AluI	AGCT	2 cut(s)	331, 404
AoxI	GGCC	3 cut(s)	114, 356, 364
ApaI	GGGCCC	1 cut(s)	118
ApeKI	GCWGC	3 cut(s)	31, 259, 448
ApoI	RAATTY	1 cut(s)	163
ArsI	GACNNNNNNTTYG	4 cut(s)	233, 265, 276, 308
AspA2I	CCTAGG	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	3 cut(s)	114, 115, 364
AsuC2I	CCSGG	1 cut(s)	16
AvrII	CCTAGG	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	43, 271
BciT130I	CCWGG	1 cut(s)	158
BcnI	CCSGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	453
BisI	GCNGC	5 cut(s)	29, 32, 213, 260, 449
BlnI	CCTAGG	1 cut(s)	452
BlsI	GCNGC	5 cut(s)	30, 33, 214, 261, 450
Bme1390I	CCNGG	2 cut(s)	16, 158
BmgT120I	GGNCC	3 cut(s)	114, 115, 364
BmiI	GGNNCC	3 cut(s)	116, 140, 155
BmrFI	CCNGG	2 cut(s)	16, 158
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	72, 134, 386, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 111, 373
Bse1I	ACTGG	2 cut(s)	124, 155
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	4 cut(s)	72, 134, 386, 452
BseLI	CCNNNNNNNGG	3 cut(s)	108, 111, 373
BseNI	ACTGG	2 cut(s)	124, 155
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	43, 271
BseYI	CCCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	3 cut(s)	116, 358, 366
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	2 cut(s)	115, 417
BslI	CCNNNNNNNGG	3 cut(s)	108, 111, 373
BsmFI	GGGAC	2 cut(s)	115, 417
BsnI	GGCC	3 cut(s)	116, 358, 366
Bsp120I	GGGCCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	118
BspACI	CCGC	6 cut(s)	26, 29, 86, 213, 273, 299
BspANI	GGCC	3 cut(s)	116, 358, 366
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	3 cut(s)	116, 140, 155
BsrI	ACTGG	2 cut(s)	124, 155
BssECI	CCNNGG	4 cut(s)	72, 134, 386, 452
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	2 cut(s)	134, 452
Bst2UI	CCWGG	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	254, 300
BstACI	GRCGYC	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 83, 337
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	14, 156
BstSLI	GKGCMC	1 cut(s)	118
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	43, 271
BsuRI	GGCC	3 cut(s)	116, 358, 366
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	3 cut(s)	114, 115, 364
CseI	GACGC	1 cut(s)	218
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	9 cut(s)	42, 116, 154, 331, 346, 358, 366, 404, 451
CviKI_1	RGCY	9 cut(s)	42, 116, 154, 331, 346, 358, 366, 404, 451
EaeI	YGGCCR	1 cut(s)	356
Eam1104I	CTCTTC	2 cut(s)	254, 300
EarI	CTCTTC	2 cut(s)	254, 300
EciI	GGCGGA	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	134, 452
Eco24I	GRGCYC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	2 cut(s)	134, 452
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	2 cut(s)	134, 452
FaeI	CATG	1 cut(s)	173
FaiI	YATR	1 cut(s)	171
FaqI	GGGAC	2 cut(s)	115, 417
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	5 cut(s)	29, 32, 213, 260, 449
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	5 cut(s)	29, 32, 213, 260, 449
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	5 cut(s)	29, 32, 213, 260, 449
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	3 cut(s)	116, 358, 366
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	173
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	227, 430, 442
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	60, 199, 232, 408
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	4 cut(s)	212, 227, 245, 257
HpyAV	CCTTC	3 cut(s)	199, 226, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 83, 337
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	173
HspAI	GCGC	1 cut(s)	383
KspAI	GTTAAC	1 cut(s)	205
LmnI	GCTCC	4 cut(s)	61, 159, 328, 409
Lsp1109I	GCAGC	2 cut(s)	43, 271
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	143
MboII	GAAGA	2 cut(s)	241, 317
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	221, 439
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	9 cut(s)	82, 85, 230, 257, 283, 289, 295, 301, 381
MseI	TTAA	2 cut(s)	204, 417
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	16, 158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	25, 83, 337
NciI	CCSGG	1 cut(s)	16
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	3 cut(s)	116, 140, 155
NmeAIII	GCCGAG	2 cut(s)	53, 411
NmuCI	GTSAC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 249
PfeI	GAWTC	1 cut(s)	442
PflMI	CCANNNNNTGG	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	5 cut(s)	30, 33, 214, 261, 450
PleI	GAGTC	2 cut(s)	221, 438
PpsI	GAGTC	2 cut(s)	221, 438
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	116, 140, 155
PspOMI	GGGCCC	1 cut(s)	114
PspPI	GGNCC	3 cut(s)	114, 115, 364
SaqAI	TTAA	2 cut(s)	204, 417
SatI	GCNGC	5 cut(s)	29, 32, 213, 260, 449
Sau96I	GGNCC	3 cut(s)	114, 115, 364
SchI	GAGTC	2 cut(s)	221, 439
ScrFI	CCNGG	2 cut(s)	16, 158
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	7 cut(s)	249, 294, 333, 373, 392, 406, 458
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	6 cut(s)	26, 29, 86, 213, 273, 299
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	14, 156
StyI	CCWWGG	2 cut(s)	134, 452
TaqI	TCGA	5 cut(s)	38, 222, 240, 252, 294
TasI	AATT	1 cut(s)	163
TauI	GCSGC	2 cut(s)	31, 215
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	2 cut(s)	204, 417
Tru9I	TTAA	2 cut(s)	204, 417
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	3 cut(s)	31, 259, 448
Tsp45I	GTSAC	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	163
XmaJI	CCTAGG	1 cut(s)	452
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.