Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012654

Physical Location & Seq

Genomic Coordinates Forward (+)

26626609 .. 26627610

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1160300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGACGTGATCTCCAGGAGCGCGACGACGTCGTCGAATCTGAATCCCAACGCTCCGATGTTCGTGCCGCTGGCGTATCGGACGGTGGAGGACTTCTCCGCCGAATGGTGGGCCCTGGTTCAGTCCTCCCCTTGGTTCCAAGACTACTGGCTCCGGGAGCGCTTCCAAGATCCCCAAAACGACGGCGCCTATCCCGATATTCTCGATCCTGACCTCCTCCCCGACATCGACGCTCTCTTCGACGACGTCGAGAACCACCACCACTCCCCCCGCACTCAGCCGGCGGTGGAGGAACAAGAGAAGGACTTGAAGAAAGAGCTGGCGTCGTTGGGATTGCTGAAATGGCGGAAGGGCCGACCCGCGGCGGAGGCGCCGAGGTACATCGAAAAGGCTCCGAAGATTGTCAACGTGAAAGTGAGTCCGAGGCCGATCCAGCAGCCGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

149

Amino Acids

17.06

Weight (kDa)

5.19

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25400 FvH4_7g25400 FvH4_7g25400
malus_domestica	MD01G1160300.v1.1 MD07G1228500.v1.1
prunus_persica	Prupe.2G258200_v2.0.a1 Prupe.2G258200_v2.0.a1
pyrus_communis	pycom07g20690
rosa_chinensis	RchiOBHm_Chr1g0371351
rosa_laevigata	RLG00000026969
rosa_multiflora	Rmu_sc0000809.1_g000037
rosa_roxburghii	Rroxscaffold_4G00285770
rosa_rugosa	Rorug01G0363300 Rorug01G0363300 Rorug01G0363300
rosa_samantha	Rh1AG373300 Rh1BG336800 Rh1CG350100
rosa_wichuraiana	Rw1G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
AatII	GACGTC	2 cut(s)	32, 249
AccB1I	GGYRCC	2 cut(s)	185, 370
AccII	CGCG	3 cut(s)	23, 362, 442
AclWI	GGATC	3 cut(s)	164, 200, 424
AcyI	GRCGYC	5 cut(s)	29, 186, 246, 323, 371
AfaI	GTAC	1 cut(s)	380
AfeI	AGCGCT	1 cut(s)	161
AfiI	CCNNNNNNNGG	4 cut(s)	105, 108, 132, 361
AgsI	TTSAA	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	7
AjnI	CCWGG	2 cut(s)	14, 114
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
AlwI	GGATC	3 cut(s)	164, 200, 424
Aor51HI	AGCGCT	1 cut(s)	161
AoxI	GGCC	3 cut(s)	111, 352, 425
ApaI	GGGCCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	436
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	4 cut(s)	23, 162, 188, 373
AspS9I	GGNCC	3 cut(s)	111, 112, 352
AsuC2I	CCSGG	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	2 cut(s)	185, 370
BanII	GRGCYC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	2 cut(s)	16, 116
BcnI	CCSGG	1 cut(s)	155
BfoI	RGCGCY	3 cut(s)	163, 189, 374
BisI	GCNGC	4 cut(s)	68, 363, 437, 440
BlsI	GCNGC	4 cut(s)	69, 364, 438, 441
Bme1390I	CCNGG	3 cut(s)	16, 116, 155
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	3 cut(s)	111, 112, 352
BmiI	GGNNCC	6 cut(s)	113, 137, 152, 187, 372, 393
BmrFI	CCNGG	3 cut(s)	16, 116, 155
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpuMI	CCSGG	1 cut(s)	155
BsaHI	GRCGYC	5 cut(s)	29, 186, 246, 323, 371
BsaJI	CCNNGG	6 cut(s)	114, 131, 360, 374, 422, 440
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 248, 278
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 108, 132, 361
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	16, 116
BseDI	CCNNGG	6 cut(s)	114, 131, 360, 374, 422, 440
BseLI	CCNNNNNNNGG	4 cut(s)	105, 108, 132, 361
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	115
Bsh1236I	CGCG	3 cut(s)	23, 362, 442
BshFI	GGCC	3 cut(s)	113, 354, 427
BshNI	GGYRCC	2 cut(s)	185, 370
BsiSI	CCGG	2 cut(s)	154, 281
BslI	CCNNNNNNNGG	4 cut(s)	105, 108, 132, 361
BsnI	GGCC	3 cut(s)	113, 354, 427
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	4 cut(s)	9, 169, 205, 429
BspANI	GGCC	3 cut(s)	113, 354, 427
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	3 cut(s)	23, 362, 442
BspLI	GGNNCC	6 cut(s)	113, 137, 152, 187, 372, 393
BspPI	GGATC	3 cut(s)	164, 200, 424
BspT107I	GGYRCC	2 cut(s)	185, 370
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	6 cut(s)	114, 131, 360, 374, 422, 440
BssMI	GATC	4 cut(s)	9, 169, 205, 429
BssNI	GRCGYC	5 cut(s)	29, 186, 246, 323, 371
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	16, 116
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	5 cut(s)	29, 186, 246, 323, 371
BstC8I	GCNNGC	3 cut(s)	72, 282, 321
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	2 cut(s)	360, 440
BstFNI	CGCG	3 cut(s)	23, 362, 442
BstH2I	RGCGCY	3 cut(s)	163, 189, 374
BstHHI	GCGC	4 cut(s)	23, 162, 188, 373
BstKTI	GATC	4 cut(s)	12, 172, 208, 432
BstMBI	GATC	4 cut(s)	9, 169, 205, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 343, 368, 433
BstNI	CCWGG	2 cut(s)	16, 116
BstSCI	CCNGG	3 cut(s)	14, 114, 153
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	3 cut(s)	23, 362, 442
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	113, 354, 427
BtgI	CCRYGG	2 cut(s)	360, 440
BtrI	CACGTC	1 cut(s)	7
Cac8I	GCNNGC	3 cut(s)	72, 282, 321
CfoI	GCGC	4 cut(s)	23, 162, 188, 373
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	111, 112, 352
Cfr42I	CCGCGG	2 cut(s)	363, 443
CseI	GACGC	2 cut(s)	239, 312
Csp6I	GTAC	1 cut(s)	379
CviJI	RGCY	8 cut(s)	113, 151, 280, 319, 354, 392, 427, 439
CviKI_1	RGCY	8 cut(s)	113, 151, 280, 319, 354, 392, 427, 439
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	276
DinI	GGCGCC	2 cut(s)	187, 372
DpnI	GATC	4 cut(s)	11, 171, 207, 431
DpnII	GATC	4 cut(s)	9, 169, 205, 429
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	3 cut(s)	88, 361, 380
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	115
Eco47III	AGCGCT	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	14, 114
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	115
EgeI	GGCGCC	2 cut(s)	187, 372
EheI	GGCGCC	2 cut(s)	187, 372
ErhI	CCWWGG	1 cut(s)	131
FauI	CCCGC	2 cut(s)	278, 367
Fnu4HI	GCNGC	4 cut(s)	68, 363, 437, 440
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	4 cut(s)	68, 363, 437, 440
GlaI	GCGC	4 cut(s)	22, 161, 187, 372
GluI	GCNGC	4 cut(s)	68, 363, 437, 440
HaeII	RGCGCY	3 cut(s)	163, 189, 374
HaeIII	GGCC	3 cut(s)	113, 354, 427
HapII	CCGG	2 cut(s)	154, 281
HgaI	GACGC	2 cut(s)	239, 312
HhaI	GCGC	4 cut(s)	23, 162, 188, 373
Hin1I	GRCGYC	5 cut(s)	29, 186, 246, 323, 371
Hin6I	GCGC	4 cut(s)	21, 160, 186, 371
HinP1I	GCGC	4 cut(s)	21, 160, 186, 371
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	3 cut(s)	37, 43, 418
HpaII	CCGG	2 cut(s)	154, 281
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	5 cut(s)	42, 57, 81, 396, 423
Hpy188III	TCNNGA	4 cut(s)	194, 203, 209, 250
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	295, 343
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	4 cut(s)	6, 29, 246, 408
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 343, 368, 433
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	4 cut(s)	6, 29, 246, 408
Hsp92I	GRCGYC	5 cut(s)	29, 186, 246, 323, 371
HspAI	GCGC	4 cut(s)	21, 160, 186, 371
KasI	GGCGCC	2 cut(s)	185, 370
KroI	GCCGGC	1 cut(s)	280
KroNI	GCCGGC	1 cut(s)	282
KspI	CCGCGG	2 cut(s)	363, 443
Kzo9I	GATC	4 cut(s)	9, 169, 205, 429
LmnI	GCTCC	5 cut(s)	18, 58, 156, 157, 397
LpnPI	CCDG	9 cut(s)	28, 56, 101, 128, 133, 167, 222, 294, 305
MaeII	ACGT	4 cut(s)	6, 29, 246, 408
MalI	GATC	4 cut(s)	11, 171, 207, 431
MboI	GATC	4 cut(s)	9, 169, 205, 429
MboII	GAAGA	3 cut(s)	229, 322, 409
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	115
Mly113I	GGCGCC	2 cut(s)	186, 371
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	8 cut(s)	82, 136, 224, 227, 283, 361, 369, 417
MroNI	GCCGGC	1 cut(s)	280
MspA1I	CMGCKG	3 cut(s)	70, 362, 442
MspI	CCGG	2 cut(s)	154, 281
MspR9I	CCNGG	3 cut(s)	16, 116, 155
MvaI	CCWGG	2 cut(s)	16, 116
MvnI	CGCG	3 cut(s)	23, 362, 442
MwoI	GCNNNNNNNGC	4 cut(s)	157, 343, 368, 433
NaeI	GCCGGC	1 cut(s)	282
NarI	GGCGCC	2 cut(s)	186, 371
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	9, 169, 205, 429
NgoMIV	GCCGGC	1 cut(s)	280
NlaIV	GGNNCC	6 cut(s)	113, 137, 152, 187, 372, 393
NmeAIII	GCCGAG	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	3 cut(s)	32, 237, 246
PdiI	GCCGGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	37, 43
PflFI	GACNNNGTC	3 cut(s)	28, 31, 245
PfoI	TCCNGGA	2 cut(s)	14, 153
PkrI	GCNGC	4 cut(s)	69, 364, 438, 441
PleI	GAGTC	1 cut(s)	426
PluTI	GGCGCC	2 cut(s)	189, 374
PpsI	GAGTC	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	14, 114
PspGI	CCWGG	2 cut(s)	14, 114
PspN4I	GGNNCC	6 cut(s)	113, 137, 152, 187, 372, 393
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	3 cut(s)	111, 112, 352
PsuI	RGATCY	1 cut(s)	169
PsyI	GACNNNGTC	3 cut(s)	28, 31, 245
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SacII	CCGCGG	2 cut(s)	363, 443
SatI	GCNGC	4 cut(s)	68, 363, 437, 440
Sau3AI	GATC	4 cut(s)	9, 169, 205, 429
Sau96I	GGNCC	3 cut(s)	111, 112, 352
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	3 cut(s)	16, 116, 155
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	7 cut(s)	9, 32, 216, 249, 321, 380, 411
SfoI	GGCGCC	2 cut(s)	187, 372
Sfr303I	CCGCGG	2 cut(s)	363, 443
SgrBI	CCGCGG	2 cut(s)	363, 443
SspDI	GGCGCC	2 cut(s)	185, 370
StyD4I	CCNGG	3 cut(s)	14, 114, 153
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	4 cut(s)	9, 32, 249, 411
TaqI	TCGA	6 cut(s)	35, 204, 228, 240, 249, 384
TauI	GCSGC	3 cut(s)	70, 365, 442
TfiI	GAWTC	2 cut(s)	37, 43
TseI	GCWGC	1 cut(s)	436
Tth111I	GACNNNGTC	3 cut(s)	28, 31, 245
ZraI	GACGTC	2 cut(s)	30, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.