Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012654

Physical Location & Seq

Genomic Coordinates Forward (+)

22684262 .. 22685380

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTTATTTTCCACTCTTATCCTTATCCTTATCCGCTGATTCATCACCTTCAACCCTTCTACTTCTGCAGGCGTTCTCTCACCCTCGCTCTCTTGGTTGCGACGTCGTTTCGAGATTTTCATCATCAAGCAATTACCAGACCGGCGATGGACGTCATTTCCAGGACCACGACGATGTCGTCGAATCTGAATCCCAACGCTCCGATGTTCGTGCCGCTGGCGTATCGGACGGTGGAGGACTTCTCCGCCGAGTGGTGGGCCCTGGTCCAGTCCTCCCCTTGGTTCCAAGACTACTGGCTCCAGGAGCGCTTCCAAGATCCCCAAAACGACCCCTCATTTTCCGATTTTCACGATCCTGCCCTCCTCTCCGATGTCGACGCCCTCTTCGACGACGTTGAGAACATCCATTACTCCCCCAACACTCAGACGGCGGAGGAGGAAGAGAAGGACTTGAACAAAGAGCTGGTTTCGTTGGGATTGCTGAAATGGCGGAAGGGCCGACCCGTGGCGGAGGCGCCGAGGTACATCCAAAAGGCGCCGAAGATTGTGAACGTGAAAGTGAGTCCCAGGGCGATTCAGCAGCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

197

Amino Acids

22.86

Weight (kDa)

5.95

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25400 FvH4_7g25400 FvH4_7g25400
malus_domestica	MD01G1160300.v1.1 MD07G1228500.v1.1
prunus_persica	Prupe.2G258200_v2.0.a1 Prupe.2G258200_v2.0.a1
pyrus_communis	pycom07g20690
rosa_chinensis	RchiOBHm_Chr1g0371351
rosa_laevigata	RLG00000026969
rosa_multiflora	Rmu_sc0000809.1_g000037
rosa_roxburghii	Rroxscaffold_4G00285770
rosa_rugosa	Rorug01G0363300 Rorug01G0363300 Rorug01G0363300
rosa_samantha	Rh1AG373300 Rh1BG336800 Rh1CG350100
rosa_wichuraiana	Rw1G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
AatII	GACGTC	2 cut(s)	107, 156
AccB1I	GGYRCC	2 cut(s)	514, 535
AccI	GTMKAC	1 cut(s)	375
AciI	CCGC	6 cut(s)	35, 215, 246, 431, 490, 509
AclWI	GGATC	2 cut(s)	311, 347
AcyI	GRCGYC	5 cut(s)	104, 153, 378, 515, 536
AfaI	GTAC	1 cut(s)	524
AfeI	AGCGCT	1 cut(s)	308
AfiI	CCNNNNNNNGG	4 cut(s)	252, 255, 279, 505
AgsI	TTSAA	2 cut(s)	53, 454
AjnI	CCWGG	4 cut(s)	161, 261, 300, 566
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
AlwI	GGATC	2 cut(s)	311, 347
Aor51HI	AGCGCT	1 cut(s)	308
AoxI	GGCC	2 cut(s)	258, 496
ApaI	GGGCCC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	580
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspLEI	GCGC	3 cut(s)	309, 517, 538
AspS9I	GGNCC	5 cut(s)	165, 258, 259, 265, 496
AsuHPI	GGTGA	2 cut(s)	38, 73
AvaII	GGWCC	2 cut(s)	165, 265
BaeGI	GKGCMC	1 cut(s)	262
BanI	GGYRCC	2 cut(s)	514, 535
BanII	GRGCYC	1 cut(s)	262
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	444
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	4 cut(s)	163, 263, 302, 568
BfmI	CTRYAG	1 cut(s)	67
BfoI	RGCGCY	3 cut(s)	310, 518, 539
BisI	GCNGC	2 cut(s)	215, 581
BlsI	GCNGC	2 cut(s)	216, 582
Bme1390I	CCNGG	4 cut(s)	163, 263, 302, 568
Bme18I	GGWCC	2 cut(s)	165, 265
BmgT120I	GGNCC	5 cut(s)	165, 258, 259, 265, 496
BmiI	GGNNCC	5 cut(s)	260, 284, 299, 516, 537
BmrFI	CCNGG	4 cut(s)	163, 263, 302, 568
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpmI	CTGGAG	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	120
BsaHI	GRCGYC	5 cut(s)	104, 153, 378, 515, 536
BsaJI	CCNNGG	7 cut(s)	261, 278, 504, 518, 566, 567, 584
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 255, 279, 505
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	268, 299
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	4 cut(s)	163, 263, 302, 568
BseDI	CCNNGG	7 cut(s)	261, 278, 504, 518, 566, 567, 584
BseGI	GGATG	2 cut(s)	402, 525
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	4 cut(s)	252, 255, 279, 505
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	2 cut(s)	268, 299
BseRI	GAGGAG	2 cut(s)	353, 449
BseSI	GKGCMC	1 cut(s)	262
BshFI	GGCC	2 cut(s)	260, 498
BshNI	GGYRCC	2 cut(s)	514, 535
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	4 cut(s)	252, 255, 279, 505
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	260, 498
Bsp120I	GGGCCC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	316, 352
BspACI	CCGC	6 cut(s)	35, 215, 246, 431, 490, 509
BspANI	GGCC	2 cut(s)	260, 498
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	5 cut(s)	260, 284, 299, 516, 537
BspMAI	CTGCAG	1 cut(s)	71
BspPI	GGATC	2 cut(s)	311, 347
BspT107I	GGYRCC	2 cut(s)	514, 535
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	268, 299
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	7 cut(s)	261, 278, 504, 518, 566, 567, 584
BssMI	GATC	2 cut(s)	316, 352
BssNI	GRCGYC	5 cut(s)	104, 153, 378, 515, 536
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	4 cut(s)	163, 263, 302, 568
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	2 cut(s)	389, 435
BstACI	GRCGYC	5 cut(s)	104, 153, 378, 515, 536
BstC8I	GCNNGC	2 cut(s)	71, 219
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	402, 525
BstH2I	RGCGCY	3 cut(s)	310, 518, 539
BstHHI	GCGC	3 cut(s)	309, 517, 538
BstKTI	GATC	2 cut(s)	319, 355
BstMBI	GATC	2 cut(s)	316, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 487
BstNI	CCWGG	4 cut(s)	163, 263, 302, 568
BstSCI	CCNGG	4 cut(s)	161, 261, 300, 566
BstSFI	CTRYAG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	260, 498
BtgI	CCRYGG	1 cut(s)	504
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	402, 525
Cac8I	GCNNGC	2 cut(s)	71, 219
CfoI	GCGC	3 cut(s)	309, 517, 538
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	5 cut(s)	165, 258, 259, 265, 496
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	523
CviJI	RGCY	5 cut(s)	260, 298, 463, 498, 583
CviKI_1	RGCY	5 cut(s)	260, 298, 463, 498, 583
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	1 cut(s)	423
DinI	GGCGCC	2 cut(s)	516, 537
DpnI	GATC	2 cut(s)	318, 354
DpnII	GATC	2 cut(s)	316, 352
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	389, 435
EarI	CTCTTC	2 cut(s)	389, 435
EciI	GGCGGA	4 cut(s)	235, 446, 505, 524
Eco130I	CCWWGG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	165, 265
Eco47III	AGCGCT	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	4 cut(s)	161, 261, 300, 566
EcoT14I	CCWWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	262
EgeI	GGCGCC	2 cut(s)	516, 537
EheI	GGCGCC	2 cut(s)	516, 537
ErhI	CCWWGG	1 cut(s)	278
FaqI	GGGAC	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	215, 581
FokI	GGATG	2 cut(s)	389, 512
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	215, 581
GlaI	GCGC	3 cut(s)	308, 516, 537
GluI	GCNGC	2 cut(s)	215, 581
GsuI	CTGGAG	1 cut(s)	284
HaeII	RGCGCY	3 cut(s)	310, 518, 539
HaeIII	GGCC	2 cut(s)	260, 498
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	386
HhaI	GCGC	3 cut(s)	309, 517, 538
Hin1I	GRCGYC	5 cut(s)	104, 153, 378, 515, 536
Hin6I	GCGC	3 cut(s)	307, 515, 536
HinP1I	GCGC	3 cut(s)	307, 515, 536
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	5 cut(s)	40, 184, 190, 562, 574
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	2 cut(s)	38, 73
Hpy166II	GTNNAC	2 cut(s)	376, 550
Hpy188I	TCNGA	6 cut(s)	189, 204, 228, 343, 370, 426
Hpy188III	TCNNGA	2 cut(s)	113, 350
Hpy8I	GTNNAC	2 cut(s)	376, 550
Hpy99I	CGWCG	7 cut(s)	106, 109, 175, 184, 380, 392, 395
HpyAV	CCTTC	4 cut(s)	59, 67, 439, 487
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	4 cut(s)	104, 153, 393, 552
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 487
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	4 cut(s)	104, 153, 393, 552
Hsp92I	GRCGYC	5 cut(s)	104, 153, 378, 515, 536
HspAI	GCGC	3 cut(s)	307, 515, 536
KasI	GGCGCC	2 cut(s)	514, 535
Kzo9I	GATC	2 cut(s)	316, 352
LmnI	GCTCC	3 cut(s)	205, 303, 304
MaeII	ACGT	4 cut(s)	104, 153, 393, 552
MalI	GATC	2 cut(s)	318, 354
MboI	GATC	2 cut(s)	316, 352
MboII	GAAGA	3 cut(s)	376, 452, 553
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	1 cut(s)	132
Mly113I	GGCGCC	2 cut(s)	515, 536
MlyI	GAGTC	1 cut(s)	571
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	2 cut(s)	37, 217
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	4 cut(s)	163, 263, 302, 568
MvaI	CCWGG	4 cut(s)	163, 263, 302, 568
MwoI	GCNNNNNNNGC	2 cut(s)	304, 487
NarI	GGCGCC	2 cut(s)	515, 536
NdeII	GATC	2 cut(s)	316, 352
NlaIV	GGNNCC	5 cut(s)	260, 284, 299, 516, 537
NmeAIII	GCCGAG	2 cut(s)	274, 543
PasI	CCCWGGG	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	3 cut(s)	176, 179, 384
PfeI	GAWTC	4 cut(s)	40, 184, 190, 574
PflFI	GACNNNGTC	1 cut(s)	175
PfoI	TCCNGGA	2 cut(s)	161, 300
PkrI	GCNGC	2 cut(s)	216, 582
PleI	GAGTC	1 cut(s)	570
PluTI	GGCGCC	2 cut(s)	518, 539
PpsI	GAGTC	1 cut(s)	570
Psp6I	CCWGG	4 cut(s)	161, 261, 300, 566
PspGI	CCWGG	4 cut(s)	161, 261, 300, 566
PspN4I	GGNNCC	5 cut(s)	260, 284, 299, 516, 537
PspOMI	GGGCCC	1 cut(s)	258
PspPI	GGNCC	5 cut(s)	165, 258, 259, 265, 496
PsrI	GAACNNNNNNTAC	2 cut(s)	392, 424
PstI	CTGCAG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	374
SatI	GCNGC	2 cut(s)	215, 581
Sau3AI	GATC	2 cut(s)	316, 352
Sau96I	GGNCC	5 cut(s)	165, 258, 259, 265, 496
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	4 cut(s)	163, 263, 302, 568
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	8 cut(s)	51, 107, 156, 396, 465, 524, 555, 590
SfcI	CTRYAG	1 cut(s)	67
SfoI	GGCGCC	2 cut(s)	516, 537
SinI	GGWCC	2 cut(s)	165, 265
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	6 cut(s)	35, 215, 246, 431, 490, 509
SspDI	GGCGCC	2 cut(s)	514, 535
StyD4I	CCNGG	4 cut(s)	161, 261, 300, 566
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	4 cut(s)	107, 156, 396, 555
TaqI	TCGA	4 cut(s)	112, 182, 375, 387
TasI	AATT	1 cut(s)	132
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	4 cut(s)	40, 184, 190, 574
TseI	GCWGC	1 cut(s)	580
TspDTI	ATGAA	2 cut(s)	32, 110
Tth111I	GACNNNGTC	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	165, 265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	375
ZraI	GACGTC	2 cut(s)	105, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.