Prupe.2G258200_v2.0.a1

Protein EARLY RESPONSIVE TO DEHYDRATION 15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012654
Physical Location & Seq
Forward (+)
26933621 .. 26934718
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G258200.2

Sequence Viewer

Length: 450 bp
ATGGACGTGATTTCCAGGAGGACGACGACATCGTCGACTTTGAATCCGAACGCTCCGATGTTCGTGCCGTTGGCGTATCGGACGGTGGAGGACTTCTCCACCGAGTGGTGGTCCCTGGTCCAGTCCTCACCTTGGTTCCAAGACTACTGGCTTCAGGAGCGCTTCCAAGATCCCCAAAACGACCCCTTCTCTCCCGATATTAACGATCCTGCCCTCCCCGATGACGTCGATGCTCTCTTCGATGACGTTCACTACCCCAACAACAACACACAGGCACAGCAGGAGGAGGAGGAAGAGGAGAAGGATTTTCATAAGGAGCTGGTTTCCATGGGACTGCTGAAATGGCGAAAGGGTCGGCCTTTGGCTGAGGCTCCCAGGTTCATCGAAAAGGCTCCCAAGATTGTGAACGTGATGAAAGTGAGTCCGCGGGCGATTCAGCAGCCGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2

Protein Analysis

150

Amino Acids

17.44

Weight (kDa)

4.67

Isoelectric Point (pI)

63.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
AatII GACGTC 1 cut(s) 228
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 1 cut(s) 35
AccII CGCG 1 cut(s) 427
AciI CCGC 2 cut(s) 425, 427
AclWI GGATC 2 cut(s) 164, 200
AcuI CTGAAG 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 105
AfeI AGCGCT 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 105, 108, 132
AgsI TTSAA 1 cut(s) 43
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 3 cut(s) 14, 114, 374
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
AlwI GGATC 2 cut(s) 164, 200
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 439
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 111, 118
AsuHPI GGTGA 1 cut(s) 120
AvaII GGWCC 2 cut(s) 111, 118
BbvCI CCTCAGC 1 cut(s) 366
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 3 cut(s) 16, 116, 376
BfoI RGCGCY 1 cut(s) 163
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
Bme1390I CCNGG 3 cut(s) 16, 116, 376
Bme18I GGWCC 2 cut(s) 111, 118
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 111, 118
BmiI GGNNCC 4 cut(s) 113, 137, 372, 393
BmrFI CCNGG 3 cut(s) 16, 116, 376
BmsI GCATC 1 cut(s) 220
BplI GAGNNNNNCTC 2 cut(s) 80, 112
Bpu10I CCTNAGC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 6 cut(s) 114, 131, 327, 374, 425, 443
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 108, 132
Bse1I ACTGG 2 cut(s) 121, 152
BseBI CCWGG 3 cut(s) 16, 116, 376
BseDI CCNNGG 6 cut(s) 114, 131, 327, 374, 425, 443
BseLI CCNNNNNNNGG 3 cut(s) 105, 108, 132
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 2 cut(s) 121, 152
BseRI GAGGAG 3 cut(s) 299, 302, 311
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 1 cut(s) 358
BslFI GGGAC 2 cut(s) 97, 345
BslI CCNNNNNNNGG 3 cut(s) 105, 108, 132
BsmFI GGGAC 2 cut(s) 97, 345
BsnI GGCC 1 cut(s) 358
Bsp143I GATC 2 cut(s) 169, 205
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 2 cut(s) 425, 427
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 4 cut(s) 113, 137, 372, 393
BspPI GGATC 2 cut(s) 164, 200
BsrI ACTGG 2 cut(s) 121, 152
BssECI CCNNGG 6 cut(s) 114, 131, 327, 374, 425, 443
BssMI GATC 2 cut(s) 169, 205
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 131, 327
Bst2UI CCWGG 3 cut(s) 16, 116, 376
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 242, 288
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 2 cut(s) 327, 425
BstFNI CGCG 1 cut(s) 427
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 172, 208
BstMBI GATC 2 cut(s) 169, 205
BstMWI GCNNNNNNNGC 2 cut(s) 157, 343
BstNI CCWGG 3 cut(s) 16, 116, 376
BstSCI CCNGG 3 cut(s) 14, 114, 374
BstUI CGCG 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 2 cut(s) 327, 425
BtrI CACGTC 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 429
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 111, 118
Cfr42I CCGCGG 1 cut(s) 428
CviAII CATG 1 cut(s) 328
CviJI RGCY 7 cut(s) 151, 319, 358, 365, 371, 392, 442
CviKI_1 RGCY 7 cut(s) 151, 319, 358, 365, 371, 392, 442
DdeI CTNAG 1 cut(s) 366
DpnI GATC 2 cut(s) 171, 207
DpnII GATC 2 cut(s) 169, 205
DraIII CACNNNGTG 1 cut(s) 105
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
Eam1104I CTCTTC 2 cut(s) 242, 288
EarI CTCTTC 2 cut(s) 242, 288
Eco130I CCWWGG 2 cut(s) 131, 327
Eco47I GGWCC 2 cut(s) 111, 118
Eco47III AGCGCT 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 137
EcoRII CCWGG 3 cut(s) 14, 114, 374
EcoT14I CCWWGG 2 cut(s) 131, 327
ErhI CCWWGG 2 cut(s) 131, 327
FaeI CATG 1 cut(s) 331
FaiI YATR 2 cut(s) 312, 329
FaqI GGGAC 2 cut(s) 97, 345
FatI CATG 1 cut(s) 327
FauI CCCGC 1 cut(s) 420
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 440
GlaI GCGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 440
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 358
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 3 cut(s) 43, 421, 433
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 3 cut(s) 36, 250, 406
Hpy188I TCNGA 3 cut(s) 48, 57, 81
Hpy188III TCNNGA 2 cut(s) 155, 194
Hpy8I GTNNAC 3 cut(s) 36, 250, 406
Hpy99I CGWCG 3 cut(s) 28, 37, 230
HpyAV CCTTC 2 cut(s) 196, 295
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 4 cut(s) 6, 225, 246, 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 343
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 4 cut(s) 6, 225, 246, 408
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 160
KspI CCGCGG 1 cut(s) 428
Kzo9I GATC 2 cut(s) 169, 205
LmnI GCTCC 5 cut(s) 58, 157, 316, 376, 397
LweI GCATC 1 cut(s) 220
MaeII ACGT 4 cut(s) 6, 225, 246, 408
MalI GATC 2 cut(s) 171, 207
MboI GATC 2 cut(s) 169, 205
MboII GAAGA 2 cut(s) 229, 305
MflI RGATCY 1 cut(s) 169
MlyI GAGTC 1 cut(s) 430
MseI TTAA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 427
MspR9I CCNGG 3 cut(s) 16, 116, 376
MvaI CCWGG 3 cut(s) 16, 116, 376
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 157, 343
NcoI CCATGG 1 cut(s) 327
NdeII GATC 2 cut(s) 169, 205
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 4 cut(s) 113, 137, 372, 393
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 32
PfeI GAWTC 2 cut(s) 43, 433
PflFI GACNNNGTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
Psp6I CCWGG 3 cut(s) 14, 114, 374
PspGI CCWGG 3 cut(s) 14, 114, 374
PspN4I GGNNCC 4 cut(s) 113, 137, 372, 393
PspPI GGNCC 2 cut(s) 111, 118
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 31
SacII CCGCGG 1 cut(s) 428
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 2 cut(s) 169, 205
Sau96I GGNCC 2 cut(s) 111, 118
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 3 cut(s) 16, 116, 376
SetI ASST 8 cut(s) 9, 133, 228, 249, 321, 380, 411, 449
SfaNI GCATC 1 cut(s) 220
Sfr303I CCGCGG 1 cut(s) 428
SgrBI CCGCGG 1 cut(s) 428
SinI GGWCC 2 cut(s) 111, 118
SsiI CCGC 2 cut(s) 425, 427
StyD4I CCNGG 3 cut(s) 14, 114, 374
StyI CCWWGG 2 cut(s) 131, 327
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 4 cut(s) 9, 228, 249, 411
TaqI TCGA 4 cut(s) 35, 228, 240, 384
TfiI GAWTC 2 cut(s) 43, 433
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 3 cut(s) 299, 370, 428
Tth111I GACNNNGTC 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 111, 118
XmiI GTMKAC 1 cut(s) 35
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.