Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012654

Physical Location & Seq

Genomic Coordinates Forward (+)

62681807 .. 62682621

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACGTCATTTCCCGGCAGCAGCCGCAGTCGACTCTGAACCCGAACGCTCCGATGTTTGTTCCGTCGGCGTATCGGACGGTGGAGGACTTCTCCGCCGAGTGGTGGGCCCTGGTCCAGTCCTCCCCTTGGTTCCGCGACTACTGGCTCCAGGAGAACTTCCAGGATCCCCAGAATGACCCCTTCTTTTCCGATATTCCCGACGACTCCGACTACATCGACGACCTCTTCGACGAGGAACACTACCCCACCACCACCGCCGCCGCCAACAACACACAACAGGTGGAGGAGGAAGAAGAAGAGGAGAAAGACTATCACAAGGAGCTGGTTTCGTTGGGACTGTTGAAGTGGCCGAGGGGTCGAGCTGTGGCGAAGGCCCCGAGGTTTATAGAGAAAGCTCCGAAGATTGTGAATGTCAAAGTGAGTCCCAGGTCGATTCAGCAGCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

150

Amino Acids

17.53

Weight (kDa)

4.5

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25400 FvH4_7g25400 FvH4_7g25400
malus_domestica	MD01G1160300.v1.1 MD07G1228500.v1.1
prunus_persica	Prupe.2G258200_v2.0.a1 Prupe.2G258200_v2.0.a1
pyrus_communis	pycom07g20690
rosa_chinensis	RchiOBHm_Chr1g0371351
rosa_laevigata	RLG00000026969
rosa_multiflora	Rmu_sc0000809.1_g000037
rosa_roxburghii	Rroxscaffold_4G00285770
rosa_rugosa	Rorug01G0363300 Rorug01G0363300 Rorug01G0363300
rosa_samantha	Rh1AG373300 Rh1BG336800 Rh1CG350100
rosa_wichuraiana	Rw1G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	138
AciI	CCGC	6 cut(s)	26, 96, 136, 258, 261, 264
AclWI	GGATC	2 cut(s)	161, 174
AcoI	YGGCCR	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	3 cut(s)	102, 105, 129
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	4 cut(s)	111, 150, 162, 428
AluBI	AGCT	3 cut(s)	325, 365, 398
AluI	AGCT	3 cut(s)	325, 365, 398
AlwI	GGATC	2 cut(s)	161, 174
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	3 cut(s)	108, 350, 375
ApaI	GGGCCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	19, 22, 442
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspS9I	GGNCC	4 cut(s)	108, 109, 115, 376
AsuC2I	CCSGG	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	31, 34
BciT130I	CCWGG	4 cut(s)	113, 152, 164, 430
BcnI	CCSGG	1 cut(s)	16
BisI	GCNGC	6 cut(s)	20, 23, 26, 261, 264, 443
BlsI	GCNGC	6 cut(s)	21, 24, 27, 262, 265, 444
Bme1390I	CCNGG	5 cut(s)	16, 113, 152, 164, 430
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	4 cut(s)	108, 109, 115, 376
BmiI	GGNNCC	5 cut(s)	110, 134, 149, 168, 378
BmrFI	CCNGG	5 cut(s)	16, 113, 152, 164, 430
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	6 cut(s)	111, 128, 353, 380, 428, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 105, 129
Bse1I	ACTGG	2 cut(s)	118, 149
BseBI	CCWGG	4 cut(s)	113, 152, 164, 430
BseDI	CCNNGG	6 cut(s)	111, 128, 353, 380, 428, 446
BseLI	CCNNNNNNNGG	3 cut(s)	102, 105, 129
BseNI	ACTGG	2 cut(s)	118, 149
BseRI	GAGGAG	2 cut(s)	302, 317
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	31, 34
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	110, 352, 377
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	2 cut(s)	351, 411
BslI	CCNNNNNNNGG	3 cut(s)	102, 105, 129
BsmFI	GGGAC	2 cut(s)	351, 411
BsnI	GGCC	3 cut(s)	110, 352, 377
BsoBI	CYCGRG	1 cut(s)	379
Bsp120I	GGGCCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	6 cut(s)	26, 96, 136, 258, 261, 264
BspANI	GGCC	3 cut(s)	110, 352, 377
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	5 cut(s)	110, 134, 149, 168, 378
BspPI	GGATC	2 cut(s)	161, 174
BsrI	ACTGG	2 cut(s)	118, 149
BssECI	CCNNGG	6 cut(s)	111, 128, 353, 380, 428, 446
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	4 cut(s)	113, 152, 164, 430
Bst4CI	ACNGT	2 cut(s)	82, 342
Bst6I	CTCTTC	2 cut(s)	233, 294
BstACI	GRCGYC	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	4 cut(s)	113, 152, 164, 430
BstSCI	CCNGG	5 cut(s)	14, 111, 150, 162, 428
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	31, 34
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	110, 352, 377
Cfr13I	GGNCC	4 cut(s)	108, 109, 115, 376
CviJI	RGCY	9 cut(s)	25, 110, 148, 325, 352, 365, 377, 398, 445
CviKI_1	RGCY	9 cut(s)	25, 110, 148, 325, 352, 365, 377, 398, 445
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	233, 294
EarI	CTCTTC	2 cut(s)	233, 294
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	109, 376
EcoRII	CCWGG	4 cut(s)	111, 150, 162, 428
EcoT14I	CCWWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	128
FaiI	YATR	1 cut(s)	389
FaqI	GGGAC	2 cut(s)	351, 411
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	6 cut(s)	20, 23, 26, 261, 264, 443
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	6 cut(s)	20, 23, 26, 261, 264, 443
GluI	GCNGC	6 cut(s)	20, 23, 26, 261, 264, 443
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	110, 352, 377
HapII	CCGG	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	34, 206, 424, 436
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	6 cut(s)	39, 54, 78, 193, 211, 402
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	4 cut(s)	70, 206, 224, 236
HpyAV	CCTTC	2 cut(s)	193, 367
HpyCH4III	ACNGT	2 cut(s)	82, 342
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	4 cut(s)	55, 153, 322, 403
Lsp1109I	GCAGC	2 cut(s)	31, 34
MaeII	ACGT	1 cut(s)	6
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	5 cut(s)	220, 305, 308, 311, 415
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	112
MlyI	GAGTC	3 cut(s)	28, 200, 433
MmeI	TCCRAC	1 cut(s)	234
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	5 cut(s)	16, 113, 152, 164, 430
MvaI	CCWGG	4 cut(s)	113, 152, 164, 430
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	5 cut(s)	110, 134, 149, 168, 378
NmeAIII	GCCGAG	2 cut(s)	124, 378
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	436
PfoI	TCCNGGA	2 cut(s)	150, 162
PkrI	GCNGC	6 cut(s)	21, 24, 27, 262, 265, 444
PleI	GAGTC	3 cut(s)	28, 200, 432
PpsI	GAGTC	3 cut(s)	28, 200, 432
Psp6I	CCWGG	4 cut(s)	111, 150, 162, 428
PspGI	CCWGG	4 cut(s)	111, 150, 162, 428
PspN4I	GGNNCC	5 cut(s)	110, 134, 149, 168, 378
PspOMI	GGGCCC	1 cut(s)	108
PspPI	GGNCC	4 cut(s)	108, 109, 115, 376
PsuI	RGATCY	1 cut(s)	166
SalI	GTCGAC	1 cut(s)	31
SatI	GCNGC	6 cut(s)	20, 23, 26, 261, 264, 443
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	4 cut(s)	108, 109, 115, 376
SchI	GAGTC	3 cut(s)	28, 200, 433
ScrFI	CCNGG	5 cut(s)	16, 113, 152, 164, 430
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	9 cut(s)	9, 228, 285, 327, 367, 386, 400, 434, 452
SinI	GGWCC	1 cut(s)	115
SsiI	CCGC	6 cut(s)	26, 96, 136, 258, 261, 264
StyD4I	CCNGG	5 cut(s)	14, 111, 150, 162, 428
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	82, 342
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	5 cut(s)	32, 219, 231, 361, 434
TauI	GCSGC	3 cut(s)	28, 263, 266
TfiI	GAWTC	1 cut(s)	436
TseI	GCWGC	3 cut(s)	19, 22, 442
TspGWI	ACGGA	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	32
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.