Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0012654

Physical Location & Seq

Genomic Coordinates Reverse (-)

7321323 .. 7323662

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCTTTGTTACATACTTCATAGAGATAACCCTAAAAATAAGACGGAAAACACCATAGATAATCAGATAAGAACCGCAAAAGATATTTCACATTATCCTCCTCTTCAGCTCACCTTGTTCTTCTTCTACTTAAGTTTTTCCATCATGGACGTCATTTCCCGGCAGCAGCCGCAGTCGACTCTGAACCCGAACGCTCCGATGTTCGTTCCGTCGGCGTATCGGACGGTGGAGGACTTCTCCGCCGAGTGGTGGGCCCTGGTCCAGTCCTCCCCTTGGTTCCGCGACTACTGGCTCCAGGAGAACTTCCAGGATCCCCAGAATGACCCCTTCTTTTCCGATATTCCCGACGACTCCGACTACATCGACGACCTCTTCGACGAGGAACACTACCCCACCGCCGCCGCCGCCAACAACGACAACAACACACAACAGGTGGAGGAGGAGGAAGAAGAAGAAGAGGAGAAAGACTATCACAAGGAGCTGGTTTCGTTGGGACTGTTGAAGTGGCCCAAGGGTCGGGCTGTGGCGAAGGCGCCGAGGTTTATAGAGAAAGCTCCGAAGATTGTGAATGTCAAAGTGAGTCCCAGGGCGATTCAGCAGCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

203

Amino Acids

23.7

Weight (kDa)

4.64

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25400 FvH4_7g25400 FvH4_7g25400
malus_domestica	MD01G1160300.v1.1 MD07G1228500.v1.1
prunus_persica	Prupe.2G258200_v2.0.a1 Prupe.2G258200_v2.0.a1
pyrus_communis	pycom07g20690
rosa_chinensis	RchiOBHm_Chr1g0371351
rosa_laevigata	RLG00000026969
rosa_multiflora	Rmu_sc0000809.1_g000037
rosa_roxburghii	Rroxscaffold_4G00285770
rosa_rugosa	Rorug01G0363300 Rorug01G0363300 Rorug01G0363300
rosa_samantha	Rh1AG373300 Rh1BG336800 Rh1CG350100
rosa_wichuraiana	Rw1G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	1 cut(s)	282
AciI	CCGC	8 cut(s)	75, 170, 240, 280, 396, 399, 402, 405
AclWI	GGATC	2 cut(s)	305, 318
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	2 cut(s)	150, 533
AfiI	CCNNNNNNNGG	4 cut(s)	246, 249, 273, 516
AflII	CTTAAG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	502
AjnI	CCWGG	4 cut(s)	255, 294, 306, 584
AluBI	AGCT	3 cut(s)	109, 481, 554
AluI	AGCT	3 cut(s)	109, 481, 554
AlwI	GGATC	2 cut(s)	305, 318
AoxI	GGCC	2 cut(s)	252, 506
ApaI	GGGCCC	1 cut(s)	256
ApeKI	GCWGC	3 cut(s)	163, 166, 598
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	4 cut(s)	252, 253, 259, 507
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	256
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	175, 178
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	4 cut(s)	257, 296, 308, 586
BcnI	CCSGG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	536
BfrI	CTTAAG	1 cut(s)	130
BisI	GCNGC	7 cut(s)	164, 167, 170, 399, 402, 405, 599
BlsI	GCNGC	7 cut(s)	165, 168, 171, 400, 403, 406, 600
Bme1390I	CCNGG	5 cut(s)	160, 257, 296, 308, 586
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	4 cut(s)	252, 253, 259, 507
BmiI	GGNNCC	5 cut(s)	254, 278, 293, 312, 534
BmrFI	CCNGG	5 cut(s)	160, 257, 296, 308, 586
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	160
BsaHI	GRCGYC	2 cut(s)	150, 533
BsaJI	CCNNGG	7 cut(s)	255, 272, 510, 536, 584, 585, 602
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 249, 273, 516
Bse1I	ACTGG	2 cut(s)	262, 293
BseBI	CCWGG	4 cut(s)	257, 296, 308, 586
BseDI	CCNNGG	7 cut(s)	255, 272, 510, 536, 584, 585, 602
BseLI	CCNNNNNNNGG	4 cut(s)	246, 249, 273, 516
BseNI	ACTGG	2 cut(s)	262, 293
BseRI	GAGGAG	4 cut(s)	90, 452, 455, 473
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	175, 178
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	254, 508
BshNI	GGYRCC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	507, 567
BslI	CCNNNNNNNGG	4 cut(s)	246, 249, 273, 516
BsmFI	GGGAC	2 cut(s)	507, 567
BsnI	GGCC	2 cut(s)	254, 508
Bsp120I	GGGCCC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	8 cut(s)	75, 170, 240, 280, 396, 399, 402, 405
BspANI	GGCC	2 cut(s)	254, 508
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	5 cut(s)	254, 278, 293, 312, 534
BspPI	GGATC	2 cut(s)	305, 318
BspT107I	GGYRCC	1 cut(s)	532
BspTI	CTTAAG	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	262, 293
BssECI	CCNNGG	7 cut(s)	255, 272, 510, 536, 584, 585, 602
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	2 cut(s)	150, 533
BssT1I	CCWWGG	2 cut(s)	272, 510
Bst2UI	CCWGG	4 cut(s)	257, 296, 308, 586
Bst4CI	ACNGT	2 cut(s)	226, 498
Bst6I	CTCTTC	3 cut(s)	108, 377, 450
BstACI	GRCGYC	2 cut(s)	150, 533
BstAFI	CTTAAG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 404
BstNI	CCWGG	4 cut(s)	257, 296, 308, 586
BstSCI	CCNGG	5 cut(s)	158, 255, 294, 306, 584
BstSLI	GKGCMC	1 cut(s)	256
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	175, 178
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	254, 508
CfoI	GCGC	1 cut(s)	535
Cfr13I	GGNCC	4 cut(s)	252, 253, 259, 507
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	9 cut(s)	109, 169, 254, 292, 481, 508, 521, 554, 601
CviKI_1	RGCY	9 cut(s)	109, 169, 254, 292, 481, 508, 521, 554, 601
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	108, 377, 450
EarI	CTCTTC	3 cut(s)	108, 377, 450
EciI	GGCGGA	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	272, 510
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	4 cut(s)	255, 294, 306, 584
EcoT14I	CCWWGG	2 cut(s)	272, 510
EcoT38I	GRGCYC	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	272, 510
FaeI	CATG	1 cut(s)	148
FaiI	YATR	5 cut(s)	14, 21, 56, 146, 545
FaqI	GGGAC	2 cut(s)	507, 567
FatI	CATG	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	7 cut(s)	164, 167, 170, 399, 402, 405, 599
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	7 cut(s)	164, 167, 170, 399, 402, 405, 599
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	7 cut(s)	164, 167, 170, 399, 402, 405, 599
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	254, 508
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	535
Hin1I	GRCGYC	2 cut(s)	150, 533
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	4 cut(s)	178, 350, 580, 592
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	7 cut(s)	66, 183, 198, 222, 337, 355, 558
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	4 cut(s)	214, 350, 368, 380
HpyAV	CCTTC	2 cut(s)	337, 523
HpyCH4III	ACNGT	2 cut(s)	226, 498
HpyCH4IV	ACGT	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 404
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	150, 533
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	1 cut(s)	533
KasI	GGCGCC	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	4 cut(s)	199, 297, 478, 559
Lsp1109I	GCAGC	2 cut(s)	175, 178
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	9 cut(s)	95, 112, 115, 364, 458, 461, 464, 467, 571
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	256
Mly113I	GGCGCC	1 cut(s)	533
MlyI	GAGTC	3 cut(s)	172, 344, 589
MmeI	TCCRAC	1 cut(s)	378
MseI	TTAA	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	130
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	5 cut(s)	160, 257, 296, 308, 586
MvaI	CCWGG	4 cut(s)	257, 296, 308, 586
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	169, 404
NarI	GGCGCC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	5 cut(s)	254, 278, 293, 312, 534
NmeAIII	GCCGAG	2 cut(s)	268, 561
PasI	CCCWGGG	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	592
PfoI	TCCNGGA	2 cut(s)	294, 306
PkrI	GCNGC	7 cut(s)	165, 168, 171, 400, 403, 406, 600
PleI	GAGTC	3 cut(s)	172, 344, 588
PluTI	GGCGCC	1 cut(s)	536
PpsI	GAGTC	3 cut(s)	172, 344, 588
Psp6I	CCWGG	4 cut(s)	255, 294, 306, 584
PspGI	CCWGG	4 cut(s)	255, 294, 306, 584
PspN4I	GGNNCC	5 cut(s)	254, 278, 293, 312, 534
PspOMI	GGGCCC	1 cut(s)	252
PspPI	GGNCC	4 cut(s)	252, 253, 259, 507
PsuI	RGATCY	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	7 cut(s)	164, 167, 170, 399, 402, 405, 599
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	4 cut(s)	252, 253, 259, 507
SchI	GAGTC	3 cut(s)	172, 344, 589
ScrFI	CCNGG	5 cut(s)	160, 257, 296, 308, 586
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	9 cut(s)	111, 116, 153, 372, 435, 483, 542, 556, 608
SfoI	GGCGCC	1 cut(s)	534
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SsiI	CCGC	8 cut(s)	75, 170, 240, 280, 396, 399, 402, 405
SspDI	GGCGCC	1 cut(s)	532
StyD4I	CCNGG	5 cut(s)	158, 255, 294, 306, 584
StyI	CCWWGG	2 cut(s)	272, 510
TaaI	ACNGT	2 cut(s)	226, 498
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	176, 363, 375
TauI	GCSGC	4 cut(s)	172, 401, 404, 407
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseI	GCWGC	3 cut(s)	163, 166, 598
TspDTI	ATGAA	1 cut(s)	8
TspGWI	ACGGA	2 cut(s)	59, 198
Vha464I	CTTAAG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	176
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.