Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000809.1

Orthogroup ID

OG0012654

Physical Location & Seq

Genomic Coordinates Reverse (-)

157361 .. 157908

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000809.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggacgtcatttcccggcagcagccgcagtcgactctgaacccgaacgctccgatgttcgttccgtcggcttatcggacggtggaggacttctccgccgagtggtgggccctggtccagtcctccccttggttccgcgactactggctccaggagaacttccaggatccccagaatgaccccttcttttccgatattcccgacgactccgactacatcgacgacctcttcgacgaggaacactaccccaccgccaccaacaacaacaacaacgcacaacaggtggtggaggaggaagaagaggaggagaaagactatcacaaggagctggtttcgttgggactgttgaagtggccgaagggtcgagctgtggcgaaggcgccgaggtttatagagaaagctccgaagattgtgaatgtcaaagtgagtcccagggcgattcagcagccgaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

151

Amino Acids

17.66

Weight (kDa)

4.5

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25400 FvH4_7g25400 FvH4_7g25400
malus_domestica	MD01G1160300.v1.1 MD07G1228500.v1.1
prunus_persica	Prupe.2G258200_v2.0.a1 Prupe.2G258200_v2.0.a1
pyrus_communis	pycom07g20690
rosa_chinensis	RchiOBHm_Chr1g0371351
rosa_laevigata	RLG00000026969
rosa_multiflora	Rmu_sc0000809.1_g000037
rosa_roxburghii	Rroxscaffold_4G00285770
rosa_rugosa	Rorug01G0363300 Rorug01G0363300 Rorug01G0363300
rosa_samantha	Rh1AG373300 Rh1BG336800 Rh1CG350100
rosa_wichuraiana	Rw1G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	138
AciI	CCGC	4 cut(s)	26, 96, 136, 252
AclWI	GGATC	2 cut(s)	161, 174
AcoI	YGGCCR	1 cut(s)	353
AcyI	GRCGYC	2 cut(s)	6, 380
AfiI	CCNNNNNNNGG	3 cut(s)	102, 105, 129
AgsI	TTSAA	1 cut(s)	349
AjnI	CCWGG	4 cut(s)	111, 150, 162, 431
AluBI	AGCT	3 cut(s)	328, 368, 401
AluI	AGCT	3 cut(s)	328, 368, 401
AlwI	GGATC	2 cut(s)	161, 174
AoxI	GGCC	2 cut(s)	108, 353
ApaI	GGGCCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	19, 22, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	3 cut(s)	108, 109, 115
AsuC2I	CCSGG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	31, 34
BciT130I	CCWGG	4 cut(s)	113, 152, 164, 433
BcnI	CCSGG	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	383
BisI	GCNGC	4 cut(s)	20, 23, 26, 446
BlsI	GCNGC	4 cut(s)	21, 24, 27, 447
Bme1390I	CCNGG	5 cut(s)	16, 113, 152, 164, 433
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	3 cut(s)	108, 109, 115
BmiI	GGNNCC	5 cut(s)	110, 134, 149, 168, 381
BmrFI	CCNGG	5 cut(s)	16, 113, 152, 164, 433
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	16
BsaHI	GRCGYC	2 cut(s)	6, 380
BsaJI	CCNNGG	6 cut(s)	111, 128, 383, 431, 432, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 105, 129
Bse1I	ACTGG	2 cut(s)	118, 149
BseBI	CCWGG	4 cut(s)	113, 152, 164, 433
BseDI	CCNNGG	6 cut(s)	111, 128, 383, 431, 432, 449
BseLI	CCNNNNNNNGG	3 cut(s)	102, 105, 129
BseNI	ACTGG	2 cut(s)	118, 149
BseRI	GAGGAG	3 cut(s)	305, 317, 320
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	31, 34
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	110, 355
BshNI	GGYRCC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	2 cut(s)	354, 414
BslI	CCNNNNNNNGG	3 cut(s)	102, 105, 129
BsmFI	GGGAC	2 cut(s)	354, 414
BsnI	GGCC	2 cut(s)	110, 355
Bsp120I	GGGCCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	4 cut(s)	26, 96, 136, 252
BspANI	GGCC	2 cut(s)	110, 355
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	5 cut(s)	110, 134, 149, 168, 381
BspPI	GGATC	2 cut(s)	161, 174
BspT107I	GGYRCC	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	118, 149
BssECI	CCNNGG	6 cut(s)	111, 128, 383, 431, 432, 449
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	2 cut(s)	6, 380
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	4 cut(s)	113, 152, 164, 433
Bst4CI	ACNGT	2 cut(s)	82, 345
Bst6I	CTCTTC	2 cut(s)	233, 294
BstACI	GRCGYC	2 cut(s)	6, 380
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	4 cut(s)	113, 152, 164, 433
BstSCI	CCNGG	5 cut(s)	14, 111, 150, 162, 431
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	31, 34
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	110, 355
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	3 cut(s)	108, 109, 115
CviJI	RGCY	9 cut(s)	25, 71, 110, 148, 328, 355, 368, 401, 448
CviKI_1	RGCY	9 cut(s)	25, 71, 110, 148, 328, 355, 368, 401, 448
DinI	GGCGCC	1 cut(s)	381
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	233, 294
EarI	CTCTTC	2 cut(s)	233, 294
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	4 cut(s)	111, 150, 162, 431
EcoT14I	CCWWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	381
EheI	GGCGCC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	128
FaiI	YATR	1 cut(s)	392
FaqI	GGGAC	2 cut(s)	354, 414
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	20, 23, 26, 446
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	4 cut(s)	20, 23, 26, 446
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	4 cut(s)	20, 23, 26, 446
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	110, 355
HapII	CCGG	1 cut(s)	16
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	2 cut(s)	6, 380
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	34, 206, 427, 439
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	6 cut(s)	39, 54, 78, 193, 211, 405
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	4 cut(s)	70, 206, 224, 236
HpyAV	CCTTC	3 cut(s)	193, 352, 370
HpyCH4III	ACNGT	2 cut(s)	82, 345
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	2 cut(s)	6, 380
HspAI	GCGC	1 cut(s)	380
KasI	GGCGCC	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	4 cut(s)	55, 153, 325, 406
Lsp1109I	GCAGC	2 cut(s)	31, 34
MaeII	ACGT	1 cut(s)	6
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	4 cut(s)	220, 308, 311, 418
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	112
Mly113I	GGCGCC	1 cut(s)	380
MlyI	GAGTC	3 cut(s)	28, 200, 436
MmeI	TCCRAC	1 cut(s)	234
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	5 cut(s)	16, 113, 152, 164, 433
MvaI	CCWGG	4 cut(s)	113, 152, 164, 433
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	25
NarI	GGCGCC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	5 cut(s)	110, 134, 149, 168, 381
NmeAIII	GCCGAG	2 cut(s)	124, 408
PasI	CCCWGGG	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	439
PfoI	TCCNGGA	2 cut(s)	150, 162
PkrI	GCNGC	4 cut(s)	21, 24, 27, 447
PleI	GAGTC	3 cut(s)	28, 200, 435
PluTI	GGCGCC	1 cut(s)	383
PpsI	GAGTC	3 cut(s)	28, 200, 435
Psp6I	CCWGG	4 cut(s)	111, 150, 162, 431
PspGI	CCWGG	4 cut(s)	111, 150, 162, 431
PspN4I	GGNNCC	5 cut(s)	110, 134, 149, 168, 381
PspOMI	GGGCCC	1 cut(s)	108
PspPI	GGNCC	3 cut(s)	108, 109, 115
PsuI	RGATCY	1 cut(s)	166
SalI	GTCGAC	1 cut(s)	31
SatI	GCNGC	4 cut(s)	20, 23, 26, 446
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	3 cut(s)	108, 109, 115
SchI	GAGTC	3 cut(s)	28, 200, 436
ScrFI	CCNGG	5 cut(s)	16, 113, 152, 164, 433
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	8 cut(s)	9, 228, 285, 330, 370, 389, 403, 455
SfoI	GGCGCC	1 cut(s)	381
SinI	GGWCC	1 cut(s)	115
SsiI	CCGC	4 cut(s)	26, 96, 136, 252
SspDI	GGCGCC	1 cut(s)	379
StyD4I	CCNGG	5 cut(s)	14, 111, 150, 162, 431
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	82, 345
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	4 cut(s)	32, 219, 231, 364
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	439
TseI	GCWGC	3 cut(s)	19, 22, 445
TspGWI	ACGGA	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	32
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.