Rroxscaffold_4G00285770

Protein EARLY RESPONSIVE TO DEHYDRATION 15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012654
Physical Location & Seq
Reverse (-)
6959748 .. 6960631
884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285770.1

Sequence Viewer

Length: 408 bp
ATGGACGTCATTTCCCGGCAGCAGCCGCAGTCGACTCTGAACCCGAACGCTCCGATGTTCGTTCCGTCGGCGTATCGGACGGTGGAGGACTTCTCCGCCGAGTGGTGGGCCCTGGTCCAGTCCTCCCCTTGGTTCCGCGACTACTGGCTCCAGGAGAACTTCCAGGATCCCCAGAATGACCCCTTCTTTTCCGATATTCCCGACGACTCCGACTACATCGACGACCTCTTCGACGAGGAACACTACCCCACTACCGACGCCGCCAACAACACACAACAGGTGGAGGAGGAAGAAGAGGAGGAGAAAGATTATCACAAGGAGCTGGTTTCGTTGGGATTGTTGAAGTGGCCGAAGGGTCGAGCTGTGGCGAAGGCGCCGAGGTTTATAGAAAAGCTCCGAAGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2

Protein Analysis

135

Amino Acids

15.99

Weight (kDa)

4.32

Isoelectric Point (pI)

68.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 373
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 138
AciI CCGC 4 cut(s) 26, 96, 136, 261
AclWI GGATC 2 cut(s) 161, 174
AcoI YGGCCR 1 cut(s) 347
AcyI GRCGYC 3 cut(s) 6, 258, 374
AfiI CCNNNNNNNGG 3 cut(s) 102, 105, 129
AgsI TTSAA 1 cut(s) 343
AjnI CCWGG 3 cut(s) 111, 150, 162
AluBI AGCT 3 cut(s) 322, 362, 394
AluI AGCT 3 cut(s) 322, 362, 394
AlwI GGATC 2 cut(s) 161, 174
AoxI GGCC 2 cut(s) 108, 347
ApaI GGGCCC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 19, 22
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 3 cut(s) 108, 109, 115
AsuC2I CCSGG 1 cut(s) 16
AvaII GGWCC 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 112
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 31, 34
BciT130I CCWGG 3 cut(s) 113, 152, 164
BcnI CCSGG 1 cut(s) 16
BfoI RGCGCY 1 cut(s) 377
BisI GCNGC 4 cut(s) 20, 23, 26, 261
BlsI GCNGC 4 cut(s) 21, 24, 27, 262
Bme1390I CCNGG 4 cut(s) 16, 113, 152, 164
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 108, 109, 115
BmiI GGNNCC 5 cut(s) 110, 134, 149, 168, 375
BmrFI CCNGG 4 cut(s) 16, 113, 152, 164
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BpmI CTGGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 16
BsaHI GRCGYC 3 cut(s) 6, 258, 374
BsaJI CCNNGG 3 cut(s) 111, 128, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 105, 129
Bse1I ACTGG 2 cut(s) 118, 149
BseBI CCWGG 3 cut(s) 113, 152, 164
BseDI CCNNGG 3 cut(s) 111, 128, 377
BseLI CCNNNNNNNGG 3 cut(s) 102, 105, 129
BseNI ACTGG 2 cut(s) 118, 149
BseRI GAGGAG 3 cut(s) 299, 311, 314
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 2 cut(s) 31, 34
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 110, 349
BshNI GGYRCC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 3 cut(s) 102, 105, 129
BsnI GGCC 2 cut(s) 110, 349
Bsp120I GGGCCC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 4 cut(s) 26, 96, 136, 261
BspANI GGCC 2 cut(s) 110, 349
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 5 cut(s) 110, 134, 149, 168, 375
BspPI GGATC 2 cut(s) 161, 174
BspT107I GGYRCC 1 cut(s) 373
BsrI ACTGG 2 cut(s) 118, 149
BssECI CCNNGG 3 cut(s) 111, 128, 377
BssMI GATC 1 cut(s) 166
BssNI GRCGYC 3 cut(s) 6, 258, 374
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 113, 152, 164
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 233, 288
BstACI GRCGYC 3 cut(s) 6, 258, 374
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 3 cut(s) 113, 152, 164
BstSCI CCNGG 4 cut(s) 14, 111, 150, 162
BstSLI GKGCMC 1 cut(s) 112
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 31, 34
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 2 cut(s) 110, 349
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 3 cut(s) 108, 109, 115
CseI GACGC 1 cut(s) 266
CviJI RGCY 7 cut(s) 25, 110, 148, 322, 349, 362, 394
CviKI_1 RGCY 7 cut(s) 25, 110, 148, 322, 349, 362, 394
DinI GGCGCC 1 cut(s) 375
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 233, 288
EarI CTCTTC 2 cut(s) 233, 288
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 111, 150, 162
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 375
EheI GGCGCC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 128
FaiI YATR 1 cut(s) 386
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 4 cut(s) 20, 23, 26, 261
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 4 cut(s) 20, 23, 26, 261
GlaI GCGC 1 cut(s) 375
GluI GCNGC 4 cut(s) 20, 23, 26, 261
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 2 cut(s) 110, 349
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 376
Hin1I GRCGYC 3 cut(s) 6, 258, 374
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 2 cut(s) 34, 206
HpaII CCGG 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 6 cut(s) 39, 54, 78, 193, 211, 398
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 5 cut(s) 70, 206, 224, 236, 260
HpyAV CCTTC 3 cut(s) 193, 346, 364
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 3 cut(s) 6, 258, 374
HspAI GCGC 1 cut(s) 374
KasI GGCGCC 1 cut(s) 373
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 4 cut(s) 55, 153, 319, 399
Lsp1109I GCAGC 2 cut(s) 31, 34
MaeII ACGT 1 cut(s) 6
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 220, 302, 305
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 112
Mly113I GGCGCC 1 cut(s) 374
MlyI GAGTC 2 cut(s) 28, 200
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 9 cut(s) 79, 133, 229, 236, 277, 280, 289, 292, 372
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 4 cut(s) 16, 113, 152, 164
MvaI CCWGG 3 cut(s) 113, 152, 164
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 25
NarI GGCGCC 1 cut(s) 374
NciI CCSGG 1 cut(s) 16
NdeII GATC 1 cut(s) 166
NlaIV GGNNCC 5 cut(s) 110, 134, 149, 168, 375
NmeAIII GCCGAG 2 cut(s) 124, 402
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfoI TCCNGGA 2 cut(s) 150, 162
PkrI GCNGC 4 cut(s) 21, 24, 27, 262
PleI GAGTC 2 cut(s) 28, 200
PluTI GGCGCC 1 cut(s) 377
PpsI GAGTC 2 cut(s) 28, 200
Psp6I CCWGG 3 cut(s) 111, 150, 162
PspGI CCWGG 3 cut(s) 111, 150, 162
PspN4I GGNNCC 5 cut(s) 110, 134, 149, 168, 375
PspOMI GGGCCC 1 cut(s) 108
PspPI GGNCC 3 cut(s) 108, 109, 115
PsuI RGATCY 1 cut(s) 166
SalI GTCGAC 1 cut(s) 31
SatI GCNGC 4 cut(s) 20, 23, 26, 261
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 3 cut(s) 108, 109, 115
SchI GAGTC 2 cut(s) 28, 200
ScrFI CCNGG 4 cut(s) 16, 113, 152, 164
SduI GDGCHC 1 cut(s) 112
SetI ASST 7 cut(s) 9, 228, 282, 324, 364, 383, 396
SfoI GGCGCC 1 cut(s) 375
SinI GGWCC 1 cut(s) 115
SsiI CCGC 4 cut(s) 26, 96, 136, 261
SspDI GGCGCC 1 cut(s) 373
StyD4I CCNGG 4 cut(s) 14, 111, 150, 162
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 9
TaqI TCGA 4 cut(s) 32, 219, 231, 358
TauI GCSGC 2 cut(s) 28, 263
TseI GCWGC 2 cut(s) 19, 22
TspGWI ACGGA 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 32
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.