Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012654

Physical Location & Seq

Genomic Coordinates Forward (+)

30367448 .. 30368451

Gene Structure 1004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1228500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGACATCATTTCTAGGAGCACGACGATGTCGTCGAATCTGAATCCCAACGCTCCGATGTTCGTGCCGCTGGCGTATCGGACGGTGGAGGACTTCTCCGCCGAGTGGTGGGCCCTGGTCCAGTCCTCCCCTTGGTTCCAAGACTACTGGCTCCAGGAGCGCTTCCAAGATCCCCAAAACGATCCCTCATTTTCCGATATTCACGATCCTGCCCTCCTCTCCGATGTCGACGCCCTCTTCGACGACGTTGAGAACATCCATCACTCCCGCAACACTCAGGCGGCGGAGGAGGAAGAGAAGGACTTGAACAAAGAGCTGGTTTCGTTGGGACTGCTGAAATGGCGGAAAGGCCGACCCGTGGCGGAGGCTCCGAGGTACATCGAAAAGGCGGCGAAGTTTGTGAACGTGAAAGTGAGTCCCAGGGCGATTCAGCAGCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

148

Amino Acids

16.99

Weight (kDa)

4.92

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25400 FvH4_7g25400 FvH4_7g25400
malus_domestica	MD01G1160300.v1.1 MD07G1228500.v1.1
prunus_persica	Prupe.2G258200_v2.0.a1 Prupe.2G258200_v2.0.a1
pyrus_communis	pycom07g20690
rosa_chinensis	RchiOBHm_Chr1g0371351
rosa_laevigata	RLG00000026969
rosa_multiflora	Rmu_sc0000809.1_g000037
rosa_roxburghii	Rroxscaffold_4G00285770
rosa_rugosa	Rorug01G0363300 Rorug01G0363300 Rorug01G0363300
rosa_samantha	Rh1AG373300 Rh1BG336800 Rh1CG350100
rosa_wichuraiana	Rw1G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	8 cut(s)	68, 99, 268, 281, 284, 343, 362, 389
AclWI	GGATC	3 cut(s)	164, 176, 200
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	377
AfeI	AGCGCT	1 cut(s)	161
AfiI	CCNNNNNNNGG	4 cut(s)	105, 108, 132, 358
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	3 cut(s)	114, 153, 419
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	23
AlwI	GGATC	3 cut(s)	164, 176, 200
Aor51HI	AGCGCT	1 cut(s)	161
AoxI	GGCC	2 cut(s)	111, 349
ApaI	GGGCCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	433
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	3 cut(s)	111, 112, 118
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	23
BccI	CCATC	1 cut(s)	267
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	3 cut(s)	116, 155, 421
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	163
BisI	GCNGC	4 cut(s)	68, 282, 390, 434
BlsI	GCNGC	4 cut(s)	69, 283, 391, 435
Bme1390I	CCNGG	3 cut(s)	116, 155, 421
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	111, 112, 118
BmiI	GGNNCC	4 cut(s)	113, 137, 152, 369
BmrFI	CCNGG	3 cut(s)	116, 155, 421
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	7 cut(s)	114, 131, 357, 371, 419, 420, 437
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 108, 132, 358
Bse1I	ACTGG	2 cut(s)	121, 152
BseBI	CCWGG	3 cut(s)	116, 155, 421
BseDI	CCNNGG	7 cut(s)	114, 131, 357, 371, 419, 420, 437
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	4 cut(s)	105, 108, 132, 358
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	121, 152
BseRI	GAGGAG	2 cut(s)	206, 302
BseSI	GKGCMC	1 cut(s)	115
BshFI	GGCC	2 cut(s)	113, 351
BsiHKAI	GWGCWC	1 cut(s)	23
BslFI	GGGAC	2 cut(s)	342, 402
BslI	CCNNNNNNNGG	4 cut(s)	105, 108, 132, 358
BsmFI	GGGAC	2 cut(s)	342, 402
BsnI	GGCC	2 cut(s)	113, 351
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	23, 115
Bsp143I	GATC	3 cut(s)	169, 181, 205
BspACI	CCGC	8 cut(s)	68, 99, 268, 281, 284, 343, 362, 389
BspANI	GGCC	2 cut(s)	113, 351
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	4 cut(s)	113, 137, 152, 369
BspPI	GGATC	3 cut(s)	164, 176, 200
BsrI	ACTGG	2 cut(s)	121, 152
BssECI	CCNNGG	7 cut(s)	114, 131, 357, 371, 419, 420, 437
BssMI	GATC	3 cut(s)	169, 181, 205
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	3 cut(s)	116, 155, 421
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	242, 288
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	3 cut(s)	172, 184, 208
BstMBI	GATC	3 cut(s)	169, 181, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 340
BstNI	CCWGG	3 cut(s)	116, 155, 421
BstSCI	CCNGG	3 cut(s)	114, 153, 419
BstSLI	GKGCMC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	113, 351
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	3 cut(s)	111, 112, 118
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	376
CviJI	RGCY	6 cut(s)	113, 151, 316, 351, 368, 436
CviKI_1	RGCY	6 cut(s)	113, 151, 316, 351, 368, 436
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	3 cut(s)	171, 183, 207
DpnII	GATC	3 cut(s)	169, 181, 205
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	242, 288
EarI	CTCTTC	2 cut(s)	242, 288
EciI	GGCGGA	4 cut(s)	88, 299, 358, 377
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	3 cut(s)	114, 153, 419
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	131
FaqI	GGGAC	2 cut(s)	342, 402
FauI	CCCGC	1 cut(s)	275
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	68, 282, 390, 434
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	4 cut(s)	68, 282, 390, 434
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	4 cut(s)	68, 282, 390, 434
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	113, 351
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	4 cut(s)	37, 43, 415, 427
Hpy166II	GTNNAC	2 cut(s)	229, 403
Hpy188I	TCNGA	6 cut(s)	42, 57, 81, 196, 223, 372
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	229, 403
Hpy99I	CGWCG	5 cut(s)	28, 37, 233, 245, 248
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	246, 405
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 340
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	2 cut(s)	246, 405
Hsp92I	GRCGYC	1 cut(s)	231
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	169, 181, 205
LmnI	GCTCC	5 cut(s)	18, 58, 156, 157, 373
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	2 cut(s)	246, 405
MalI	GATC	3 cut(s)	171, 183, 207
MboI	GATC	3 cut(s)	169, 181, 205
MboII	GAAGA	2 cut(s)	229, 305
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	23, 115
MlyI	GAGTC	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	70
MspR9I	CCNGG	3 cut(s)	116, 155, 421
MvaI	CCWGG	3 cut(s)	116, 155, 421
MwoI	GCNNNNNNNGC	2 cut(s)	157, 340
NdeII	GATC	3 cut(s)	169, 181, 205
NlaIV	GGNNCC	4 cut(s)	113, 137, 152, 369
NmeAIII	GCCGAG	1 cut(s)	127
PasI	CCCWGGG	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 32, 237
PfeI	GAWTC	3 cut(s)	37, 43, 427
PflFI	GACNNNGTC	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	4 cut(s)	69, 283, 391, 435
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
Psp6I	CCWGG	3 cut(s)	114, 153, 419
PspGI	CCWGG	3 cut(s)	114, 153, 419
PspN4I	GGNNCC	4 cut(s)	113, 137, 152, 369
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	3 cut(s)	111, 112, 118
PsuI	RGATCY	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	227
SatI	GCNGC	4 cut(s)	68, 282, 390, 434
Sau3AI	GATC	3 cut(s)	169, 181, 205
Sau96I	GGNCC	3 cut(s)	111, 112, 118
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	3 cut(s)	116, 155, 421
SduI	GDGCHC	2 cut(s)	23, 115
SetI	ASST	5 cut(s)	249, 318, 377, 408, 443
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	26
SsiI	CCGC	8 cut(s)	68, 99, 268, 281, 284, 343, 362, 389
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	3 cut(s)	114, 153, 419
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	249, 408
TaqI	TCGA	4 cut(s)	35, 228, 240, 381
TauI	GCSGC	3 cut(s)	70, 284, 392
TfiI	GAWTC	3 cut(s)	37, 43, 427
TseI	GCWGC	1 cut(s)	433
Tth111I	GACNNNGTC	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.