FvH4_7g27080

Rho GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005451
Physical Location & Seq
Reverse (-)
20312436 .. 20317036
4601 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27080.t2

Sequence Viewer

Length: 1131 bp
ATGCCTTCTGCTGTGTCGCCGCGGTGGCAGGAGAAGGCTACTGATTTCTTTTCTACCTCAGGGGTTAAGATTAAGGAAGCTGGACAAACGGCTGGGACATTTGTCGAGGAGGTGACAAAGGATGCAAAAGTTAATGTCTCTGATATGGCGGGGCGAGTTGGGTCAATGTTCAAGAGTCGATGGGCGATTCTTCAGAAGCCATCGACGAGGCAAGCTGTGCAGGAGCGCCTTATAACCGCTGCTGCTACGACTGGCACATTGTTTAGGAAGGGATTGTCAGAGACAAAGGACAAGGTGTCAGTTGGAAAGATCAAAGTTGAAGAGGTGGCAAAGAAGACTGCCCAAAAAAGCAAAACTATTCTGAGTGACATTGAAAGATGGCAGAAGGGTGTTGCAAGCACTGATGTTTTTGGAGTTCCACTTGAAGTTACTGTGCAACGGGAACAATCTAGCAGGCCTATTCCTCATATTTTGGTGAAATGTGCAGATTATCTCGTATTATCAGGGCTAAACACACCATATCTGTTTAAAGGCGAGGGAGATAAAAAAGTTATCCAACAATTGATTTCTATGTATAACCAAGATTCAAATGCATCATTACCAGAGGGTTTGAGTTCAATTGATGTAGCGGCTCTAATCAAATGTTACCTAGCTACCCTTCCTGAGCCATTGACTACAATTGAGCTTTATAATGATATCAGAGGTGCTCGGTCTAGCACAAATACAATGAGAAACGTGCTGAAGAGGCTTCCTACTGTAAACTATACAACACTGGAATTCATTACTGCACTACTGATGCGTGTTAGCCAGAAGTTGGTTCTCAACAAGATGGACACACAAAGTCTTGCAATGGAGATGGCCCCTGTTATAATTTGGCAGAAGGGTAGGGCACCAGAGCTATATAAAAAGTATTGGAATAAACCATCAGAAGGTCTTTCCAAGAAAAACTCGGATCCAGAGCCTACTTATAGTGCATGGGACATGCTTTCTGATGAAGATGATACTGCAGATGATTCCATTCCTTTGGATGATGGTGTGCCTATCGACTTGGGTGCTATCGAGGTTGTTCAGTGTCTCATGGAACATCACAATGCGATATTCACAGATGCAAATGAAACAGTCTGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0043087 GO:0044424 GO:0044464 GO:0050790 GO:0051336 GO:0065007 GO:0065009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RhoGAP

Protein Analysis

377

Amino Acids

41.74

Weight (kDa)

6.86

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 155 - 294 4.6e-29 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 233, 690, 869
AccB1I GGYRCC 1 cut(s) 889
AccB7I CCANNNNNTGG 1 cut(s) 814
AccII CGCG 1 cut(s) 22
AciI CCGC 5 cut(s) 20, 22, 149, 237, 629
AclWI GGATC 2 cut(s) 947, 960
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 2 cut(s) 176, 761
AfiI CCNNNNNNNGG 2 cut(s) 814, 929
AgsI TTSAA 6 cut(s) 172, 320, 374, 425, 588, 618
AhdI GACNNNNNGTC 1 cut(s) 295
AluBI AGCT 5 cut(s) 80, 215, 653, 685, 898
AluI AGCT 5 cut(s) 80, 215, 653, 685, 898
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 3 cut(s) 142, 275, 1079
AlwI GGATC 2 cut(s) 947, 960
AoxI GGCC 2 cut(s) 455, 858
ApeKI GCWGC 2 cut(s) 239, 242
ApoI RAATTY 1 cut(s) 776
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 859
AsuHPI GGTGA 2 cut(s) 124, 487
AxyI CCTNAGG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 892
BamHI GGATCC 1 cut(s) 952
BanI GGYRCC 1 cut(s) 889
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 2 cut(s) 226, 229
BccI CCATC 7 cut(s) 174, 208, 372, 823, 850, 931, 1025
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 2 cut(s) 1034, 1068
BcoDI GTCTC 3 cut(s) 142, 275, 1079
BfaI CTAG 3 cut(s) 450, 650, 714
BfmI CTRYAG 1 cut(s) 1005
BfoI RGCGCY 1 cut(s) 229
BglI GCCNNNNNGGC 1 cut(s) 25
BisI GCNGC 4 cut(s) 20, 240, 243, 630
BlsI GCNGC 4 cut(s) 21, 241, 244, 631
BmeRI GACNNNNNGTC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 859
BmiI GGNNCC 3 cut(s) 861, 891, 954
BmsI GCATC 4 cut(s) 112, 602, 786, 1096
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 663
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 814, 929
Bse1I ACTGG 2 cut(s) 256, 777
Bse21I CCTNAGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 855
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 127, 1033
BseLI CCNNNNNNNGG 2 cut(s) 814, 929
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 3 cut(s) 72, 353, 654
BseNI ACTGG 2 cut(s) 256, 777
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 892
BseXI GCAGC 2 cut(s) 226, 229
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 3 cut(s) 239, 504, 771
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 457, 860
BshNI GGYRCC 1 cut(s) 889
BsiHKAI GWGCWC 1 cut(s) 709
BslFI GGGAC 2 cut(s) 109, 992
BslI CCNNNNNNNGG 2 cut(s) 814, 929
BsmAI GTCTC 3 cut(s) 142, 275, 1079
BsmFI GGGAC 2 cut(s) 109, 992
BsnI GGCC 2 cut(s) 457, 860
Bsp1286I GDGCHC 2 cut(s) 709, 892
Bsp143I GATC 2 cut(s) 309, 952
BspACI CCGC 5 cut(s) 20, 22, 149, 237, 629
BspANI GGCC 2 cut(s) 457, 860
BspCNI CTCAG 3 cut(s) 71, 354, 655
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 861, 891, 954
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 2 cut(s) 947, 960
BspT107I GGYRCC 1 cut(s) 889
BsrDI GCAATG 1 cut(s) 855
BsrI ACTGG 2 cut(s) 256, 777
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 2 cut(s) 309, 952
Bst4CI ACNGT 3 cut(s) 433, 757, 1120
Bst6I CTCTTC 2 cut(s) 315, 737
BstAPI GCANNNNNTGC 1 cut(s) 217
BstC8I GCNNGC 3 cut(s) 213, 397, 455
BstDEI CTNAG 3 cut(s) 58, 362, 663
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 127, 1033
BstFNI CGCG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 312, 955
BstMAI GTCTC 3 cut(s) 142, 275, 1079
BstMBI GATC 2 cut(s) 309, 952
BstMWI GCNNNNNNNGC 3 cut(s) 25, 217, 745
BstNSI RCATGY 1 cut(s) 985
BstPAI GACNNNNGTC 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 892
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 226, 229
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 952
BstXI CCANNNNNNTGG 1 cut(s) 1024
BstYI RGATCY 1 cut(s) 952
Bsu36I CCTNAGG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 457, 860
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 127, 1033
BtsIMutI CAGTG 3 cut(s) 399, 770, 1076
Cac8I GCNNGC 3 cut(s) 213, 397, 455
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 859
Cfr42I CCGCGG 1 cut(s) 23
CviAII CATG 3 cut(s) 975, 982, 1078
DdeI CTNAG 3 cut(s) 58, 362, 663
DpnI GATC 2 cut(s) 311, 954
DpnII GATC 2 cut(s) 309, 952
DraI TTTAAA 1 cut(s) 529
DriI GACNNNNNGTC 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 315, 737
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 2 cut(s) 315, 737
Eco147I AGGCCT 1 cut(s) 457
Eco32I GATATC 1 cut(s) 697
Eco57I CTGAAG 2 cut(s) 176, 761
Eco81I CCTNAGG 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 776
EcoRV GATATC 1 cut(s) 697
EcoT22I ATGCAT 1 cut(s) 595
FaeI CATG 3 cut(s) 978, 985, 1081
FaqI GGGAC 2 cut(s) 109, 992
FatI CATG 3 cut(s) 974, 981, 1077
FauI CCCGC 1 cut(s) 142
Fnu4HI GCNGC 4 cut(s) 20, 240, 243, 630
FokI GGATG 2 cut(s) 134, 1040
Fsp4HI GCNGC 4 cut(s) 20, 240, 243, 630
FspBI CTAG 3 cut(s) 450, 650, 714
GlaI GCGC 1 cut(s) 227
GluI GCNGC 4 cut(s) 20, 240, 243, 630
GsaI CCCAGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 457, 860
HhaI GCGC 1 cut(s) 228
Hin1II CATG 3 cut(s) 978, 985, 1081
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 4 cut(s) 175, 187, 584, 1013
HphI GGTGA 2 cut(s) 124, 487
Hpy166II GTNNAC 1 cut(s) 760
Hpy188I TCNGA 8 cut(s) 142, 195, 280, 363, 701, 928, 952, 991
Hpy188III TCNNGA 4 cut(s) 172, 662, 956, 1123
Hpy8I GTNNAC 1 cut(s) 760
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 7 cut(s) 15, 28, 262, 379, 668, 874, 923
HpyCH4III ACNGT 3 cut(s) 433, 757, 1120
HpyCH4IV ACGT 1 cut(s) 735
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 217, 745
HpyF3I CTNAG 3 cut(s) 58, 362, 663
HpySE526I ACGT 1 cut(s) 735
Hsp92II CATG 3 cut(s) 978, 985, 1081
HspAI GCGC 1 cut(s) 226
KspI CCGCGG 1 cut(s) 23
Kzo9I GATC 2 cut(s) 309, 952
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 2 cut(s) 226, 229
LweI GCATC 4 cut(s) 112, 602, 786, 1096
MaeI CTAG 3 cut(s) 450, 650, 714
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 4 cut(s) 112, 365, 427, 644
MalI GATC 2 cut(s) 311, 954
MboI GATC 2 cut(s) 309, 952
MboII GAAGA 5 cut(s) 182, 332, 346, 754, 1007
MfeI CAATTG 3 cut(s) 560, 618, 678
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 2 cut(s) 709, 892
MluCI AATT 5 cut(s) 560, 618, 678, 776, 870
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 2 cut(s) 283, 580
Mph1103I ATGCAT 1 cut(s) 595
MseI TTAA 4 cut(s) 66, 72, 132, 528
MslI CAYNNNNRTG 1 cut(s) 1089
MspA1I CMGCKG 2 cut(s) 22, 239
MunI CAATTG 3 cut(s) 560, 618, 678
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 3 cut(s) 25, 217, 745
NdeII GATC 2 cut(s) 309, 952
NlaIII CATG 3 cut(s) 978, 985, 1081
NlaIV GGNNCC 3 cut(s) 861, 891, 954
NmuCI GTSAC 2 cut(s) 112, 365
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 1 cut(s) 985
PceI AGGCCT 1 cut(s) 457
PfeI GAWTC 3 cut(s) 187, 584, 1013
PflMI CCANNNNNTGG 1 cut(s) 814
PkrI GCNGC 4 cut(s) 21, 241, 244, 631
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PshAI GACNNNNGTC 1 cut(s) 101
PsiI TTATAA 3 cut(s) 233, 690, 869
PspFI CCCAGC 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 861, 891, 954
PspPI GGNCC 1 cut(s) 859
PstI CTGCAG 1 cut(s) 1009
PsuI RGATCY 1 cut(s) 952
RseI CAYNNNNRTG 1 cut(s) 1089
SacII CCGCGG 1 cut(s) 23
SaqAI TTAA 4 cut(s) 66, 72, 132, 528
SatI GCNGC 4 cut(s) 20, 240, 243, 630
Sau3AI GATC 2 cut(s) 309, 952
Sau96I GGNCC 1 cut(s) 859
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 2 cut(s) 709, 892
SfaNI GCATC 4 cut(s) 112, 602, 786, 1096
SfcI CTRYAG 1 cut(s) 1005
Sfr303I CCGCGG 1 cut(s) 23
SgrBI CCGCGG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 1089
Sse9I AATT 5 cut(s) 560, 618, 678, 776, 870
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 5 cut(s) 20, 22, 149, 237, 629
SspMI CTAG 3 cut(s) 450, 650, 714
StuI AGGCCT 1 cut(s) 457
TaaI ACNGT 3 cut(s) 433, 757, 1120
TaiI ACGT 1 cut(s) 738
TaqI TCGA 5 cut(s) 105, 178, 203, 1044, 1059
TaqII GACCGA 1 cut(s) 699
TasI AATT 5 cut(s) 560, 618, 678, 776, 870
TauI GCSGC 2 cut(s) 22, 632
TfiI GAWTC 3 cut(s) 187, 584, 1013
Tru1I TTAA 4 cut(s) 66, 72, 132, 528
Tru9I TTAA 4 cut(s) 66, 72, 132, 528
TscAI CASTG 3 cut(s) 406, 777, 1076
TseFI GTSAC 2 cut(s) 112, 365
TseI GCWGC 2 cut(s) 239, 242
Tsp45I GTSAC 2 cut(s) 112, 365
TspDTI ATGAA 3 cut(s) 769, 1008, 1128
TspRI CASTG 3 cut(s) 406, 777, 1076
Van91I CCANNNNNTGG 1 cut(s) 814
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 985
XspI CTAG 3 cut(s) 450, 650, 714
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.