Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005451

Physical Location & Seq

Genomic Coordinates Reverse (-)

17702884 .. 17705647

Gene Structure 2764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18900.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTTTCCCGTTCTCACCCCCCATCACACAAGAGGCAGCTACCGATTTTTTTTCATCCTCAGGGGGGAAGATTAAAGAAGCTGGAACATTTGTTGGAGAGGTCACTAAAGATGCAAAAGTGAATGTTGCTGATGTGGCAGAACGAGTTGGGTCCATGTTCAAAAGTCGATGGGCGATTCTTCAGCAACCGGCTACAAGACATGCTGTGCAGGAACGCCTTATAACTGCTGCTGCGACAACCGGTACGTTGTTTAGGAAGGGCTTATCAGAGACAAAGGAAAAGGTTTCTGTTGGGAAGATAAAAGTTGAAGAGGTGGCAAAGAAGACTGCCCAAAAGAGCAAAACCATTTTGAGTGATATCGAAAGATGGCAGAAGGGTGTTGCAAGCACCGACGTTTTTGGAGTTCCGATTGAAGTTGTTGTGCAACGGCAACAATCTAGTAGGCCCATTCCTCAAATTTTGGTCAGATGTGCAGATTATCTCATATTATCAGGCGAGGGAGATAGAAAAGTCATTCACCAACTGATTTCACTGTACAACCAAGATTCAAATGCACCATTACCAGAGGGTGTAAACCCAATTGATGTAGCGGCTCTAGTCAAATGTTACCTATCTACCCTTCCTGAGCCACTAACCACATTTGAGCTTTATAATTCGATCAAGGGTGCTCGATCCAGCATACATGCAATGAGAACCATGCTCAGGAGGCTTCCTACAGTCAACTACACAACCCTAGAATTTGTCACTGCATTACTGTTCCGTGTTAACCAGAAGACAGTTCTTAACAAGATGAGCACCCAAAGTCTCGCGATGGAGATTGCCCCTGTTATAATTTGGCAGAAGGGTATGACACAGGACCTATACAGGAAATATTGGAATCAACCTTCAAAAGGTCCTTCCAGGAAGAACTTGGATCCTGAGCCTACTTATACTGCTTGGGACATGCTTTCTGATGAAGGTGATGCTGTAGATGATTCCATACCCTTGGATGATGGCGTGCCCATGGACTTCGGTGCCATTGAGGTTGTCCAGTGTCTCATGGAACATCACAACGCAATTTTCACAGATGCTAATGAAACAATCTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0043087 GO:0044424 GO:0044464 GO:0050790 GO:0051336 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RhoGAP

Protein Analysis

365

Amino Acids

40.46

Weight (kDa)

6.98

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61530 AT5G61530 AT5G61530 AT5G61530 AT5G61530
fragaria_vesca	FvH4_7g27080 FvH4_7g27080
malus_domestica	MD01G1178200.v1.1 MD07G1250400.v1.1
prunus_persica	Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1
pyrus_communis	pycom01g18900 pycom07g22340
rosa_chinensis	RchiOBHm_Chr1g0373901
rosa_laevigata	RLG00000026797
rosa_multiflora	Rmu_sc0009236.1_g000003
rosa_roxburghii	Rroxscaffold_4G00283920
rosa_rugosa	Rorug01G0379600 Rorug01G0379700
rosa_samantha	Rh1AG389800 Rh1BG354100 Rh1CG367200 Rh1DG384800
rosa_wichuraiana	Rw1G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	224, 654, 833
AccB1I	GGYRCC	1 cut(s)	1016
AccII	CGCG	1 cut(s)	812
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	3 cut(s)	669, 911, 924
AcsI	RAATTY	2 cut(s)	459, 740
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	247, 539
AfiI	CCNNNNNNNGG	3 cut(s)	66, 705, 893
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	5 cut(s)	163, 311, 416, 552, 891
AjnI	CCWGG	1 cut(s)	902
AluBI	AGCT	3 cut(s)	41, 83, 649
AluI	AGCT	3 cut(s)	41, 83, 649
Alw21I	GWGCWC	2 cut(s)	673, 800
Alw26I	GTCTC	3 cut(s)	266, 812, 1043
AlwI	GGATC	3 cut(s)	669, 911, 924
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	38, 230, 233
ApoI	RAATTY	2 cut(s)	459, 740
AsiGI	ACCGGT	1 cut(s)	242
AspS9I	GGNCC	4 cut(s)	153, 447, 859, 896
AsuHPI	GGTGA	3 cut(s)	9, 512, 974
AvaII	GGWCC	3 cut(s)	153, 859, 896
AxyI	CCTNAGG	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	1005
BamHI	GGATCC	1 cut(s)	916
BanI	GGYRCC	1 cut(s)	1016
BbsI	GAAGAC	2 cut(s)	332, 782
Bbv12I	GWGCWC	2 cut(s)	673, 800
BbvI	GCAGC	3 cut(s)	50, 217, 220
BccI	CCATC	5 cut(s)	32, 165, 363, 808, 989
BceAI	ACGGC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	904
BcoDI	GTCTC	3 cut(s)	266, 812, 1043
BfaI	CTAG	3 cut(s)	441, 599, 737
BfmI	CTRYAG	2 cut(s)	717, 969
BisI	GCNGC	4 cut(s)	39, 231, 234, 594
BlsI	GCNGC	4 cut(s)	40, 232, 235, 595
Bme1390I	CCNGG	1 cut(s)	904
Bme18I	GGWCC	3 cut(s)	153, 859, 896
BmgT120I	GGNCC	4 cut(s)	153, 447, 859, 896
BmiI	GGNNCC	3 cut(s)	154, 918, 1018
BmrFI	CCNGG	1 cut(s)	904
BmsI	GCATC	3 cut(s)	103, 955, 1060
BpiI	GAAGAC	2 cut(s)	332, 782
Bpu10I	CCTNAGC	3 cut(s)	627, 704, 921
BsaJI	CCNNGG	2 cut(s)	987, 1005
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 705, 893
Bse118I	RCCGGY	2 cut(s)	190, 242
Bse1I	ACTGG	1 cut(s)	1033
Bse21I	CCTNAGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	904
BseDI	CCNNGG	2 cut(s)	987, 1005
BseGI	GGATG	2 cut(s)	56, 997
BseLI	CCNNNNNNNGG	3 cut(s)	66, 705, 893
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	4 cut(s)	75, 618, 718, 912
BseNI	ACTGG	1 cut(s)	1033
BseSI	GKGCMC	1 cut(s)	1005
BseXI	GCAGC	3 cut(s)	50, 217, 220
BsgI	GTGCAG	2 cut(s)	230, 495
Bsh1236I	CGCG	1 cut(s)	812
BshFI	GGCC	1 cut(s)	448
BshNI	GGYRCC	1 cut(s)	1016
BshTI	ACCGGT	1 cut(s)	242
BsiHKAI	GWGCWC	2 cut(s)	673, 800
BsiSI	CCGG	2 cut(s)	191, 243
BslFI	GGGAC	1 cut(s)	956
BslI	CCNNNNNNNGG	3 cut(s)	66, 705, 893
BsmAI	GTCTC	3 cut(s)	266, 812, 1043
BsmFI	GGGAC	1 cut(s)	956
BsnI	GGCC	1 cut(s)	448
Bsp1286I	GDGCHC	3 cut(s)	673, 800, 1005
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	660, 674, 916
Bsp19I	CCATGG	1 cut(s)	1005
Bsp68I	TCGCGA	1 cut(s)	812
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	1 cut(s)	448
BspCNI	CTCAG	4 cut(s)	74, 619, 717, 913
BspFNI	CGCG	1 cut(s)	812
BspLI	GGNNCC	3 cut(s)	154, 918, 1018
BspPI	GGATC	3 cut(s)	669, 911, 924
BspT107I	GGYRCC	1 cut(s)	1016
BsrDI	GCAATG	1 cut(s)	696
BsrFI	RCCGGY	2 cut(s)	190, 242
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	1033
BssAI	RCCGGY	2 cut(s)	190, 242
BssECI	CCNNGG	2 cut(s)	987, 1005
BssMI	GATC	3 cut(s)	660, 674, 916
BssT1I	CCWWGG	2 cut(s)	987, 1005
Bst2UI	CCWGG	1 cut(s)	904
Bst4CI	ACNGT	4 cut(s)	537, 721, 759, 781
Bst6I	CTCTTC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	388, 1001
BstDEI	CTNAG	4 cut(s)	61, 627, 704, 921
BstDSI	CCRYGG	1 cut(s)	1005
BstENI	CCTNNNNNAGG	1 cut(s)	891
BstF5I	GGATG	2 cut(s)	56, 997
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	3 cut(s)	663, 677, 919
BstMAI	GTCTC	3 cut(s)	266, 812, 1043
BstMBI	GATC	3 cut(s)	660, 674, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 709
BstNI	CCWGG	1 cut(s)	904
BstNSI	RCATGY	3 cut(s)	206, 689, 949
BstSCI	CCNGG	1 cut(s)	902
BstSFI	CTRYAG	2 cut(s)	717, 969
BstSLI	GKGCMC	1 cut(s)	1005
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	3 cut(s)	50, 217, 220
BstV2I	GAAGAC	2 cut(s)	332, 782
BstX2I	RGATCY	1 cut(s)	916
BstXI	CCANNNNNNTGG	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	916
Bsu36I	CCTNAGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	448
BtgI	CCRYGG	1 cut(s)	1005
BtgZI	GCGATG	1 cut(s)	827
BtsCI	GGATG	2 cut(s)	56, 997
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	3 cut(s)	533, 747, 1040
BtuMI	TCGCGA	1 cut(s)	812
Cac8I	GCNNGC	2 cut(s)	388, 1001
Cfr10I	RCCGGY	2 cut(s)	190, 242
Cfr13I	GGNCC	4 cut(s)	153, 447, 859, 896
Csp6I	GTAC	2 cut(s)	246, 538
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	7 cut(s)	157, 203, 686, 700, 946, 1006, 1042
CviQI	GTAC	2 cut(s)	246, 538
DdeI	CTNAG	4 cut(s)	61, 627, 704, 921
DpnI	GATC	3 cut(s)	662, 676, 918
DpnII	GATC	3 cut(s)	660, 674, 916
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	987, 1005
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	3 cut(s)	153, 859, 896
Eco57I	CTGAAG	1 cut(s)	167
Eco81I	CCTNAGG	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	891
EcoO109I	RGGNCCY	2 cut(s)	859, 896
EcoRII	CCWGG	1 cut(s)	902
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	987, 1005
ErhI	CCWWGG	2 cut(s)	987, 1005
FaeI	CATG	7 cut(s)	160, 206, 689, 703, 949, 1009, 1045
FaqI	GGGAC	1 cut(s)	956
FatI	CATG	7 cut(s)	156, 202, 685, 699, 945, 1005, 1041
Fnu4HI	GCNGC	4 cut(s)	39, 231, 234, 594
FokI	GGATG	2 cut(s)	43, 1004
Fsp4HI	GCNGC	4 cut(s)	39, 231, 234, 594
FspBI	CTAG	3 cut(s)	441, 599, 737
GluI	GCNGC	4 cut(s)	39, 231, 234, 594
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	2 cut(s)	191, 243
Hin1II	CATG	7 cut(s)	160, 206, 689, 703, 949, 1009, 1045
HincII	GTYRAC	2 cut(s)	724, 769
HindII	GTYRAC	2 cut(s)	724, 769
HinfI	GANTC	4 cut(s)	178, 548, 880, 977
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	2 cut(s)	191, 243
HphI	GGTGA	3 cut(s)	9, 512, 974
Hpy166II	GTNNAC	3 cut(s)	577, 724, 769
Hpy188I	TCNGA	4 cut(s)	271, 411, 470, 955
Hpy188III	TCNNGA	5 cut(s)	626, 706, 811, 920, 1087
Hpy8I	GTNNAC	3 cut(s)	577, 724, 769
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	7 cut(s)	253, 370, 632, 838, 897, 909, 953
HpyCH4III	ACNGT	4 cut(s)	537, 721, 759, 781
HpyCH4IV	ACGT	2 cut(s)	248, 396
HpyCH4V	TGCA	8 cut(s)	116, 211, 386, 427, 476, 557, 689, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 709
HpyF3I	CTNAG	4 cut(s)	61, 627, 704, 921
HpySE526I	ACGT	2 cut(s)	248, 396
Hsp92II	CATG	7 cut(s)	160, 206, 689, 703, 949, 1009, 1045
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	3 cut(s)	660, 674, 916
Lsp1109I	GCAGC	3 cut(s)	50, 217, 220
LweI	GCATC	3 cut(s)	103, 955, 1060
MaeI	CTAG	3 cut(s)	441, 599, 737
MaeII	ACGT	2 cut(s)	248, 396
MaeIII	GTNAC	3 cut(s)	103, 608, 745
MalI	GATC	3 cut(s)	662, 676, 918
MboI	GATC	3 cut(s)	660, 674, 916
MboII	GAAGA	7 cut(s)	82, 173, 310, 323, 337, 787, 919
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	3 cut(s)	673, 800, 1005
MluCI	AATT	6 cut(s)	459, 582, 655, 740, 834, 1059
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	9 cut(s)	28, 70, 94, 307, 465, 493, 562, 702, 1018
MseI	TTAA	3 cut(s)	75, 768, 786
MspI	CCGG	2 cut(s)	191, 243
MspR9I	CCNGG	1 cut(s)	904
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	904
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	2 cut(s)	137, 709
NcoI	CCATGG	1 cut(s)	1005
NdeII	GATC	3 cut(s)	660, 674, 916
NlaIII	CATG	7 cut(s)	160, 206, 689, 703, 949, 1009, 1045
NlaIV	GGNNCC	3 cut(s)	154, 918, 1018
NmuCI	GTSAC	2 cut(s)	103, 745
NruI	TCGCGA	1 cut(s)	812
NspI	RCATGY	3 cut(s)	206, 689, 949
PfeI	GAWTC	4 cut(s)	178, 548, 880, 977
PfoI	TCCNGGA	1 cut(s)	902
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	40, 232, 235, 595
PpuMI	RGGWCCY	2 cut(s)	859, 896
PsiI	TTATAA	3 cut(s)	224, 654, 833
Psp5II	RGGWCCY	2 cut(s)	859, 896
Psp6I	CCWGG	1 cut(s)	902
PspGI	CCWGG	1 cut(s)	902
PspN4I	GGNNCC	3 cut(s)	154, 918, 1018
PspPI	GGNCC	4 cut(s)	153, 447, 859, 896
PspPPI	RGGWCCY	2 cut(s)	859, 896
PsuI	RGATCY	1 cut(s)	916
RruI	TCGCGA	1 cut(s)	812
RsaI	GTAC	2 cut(s)	247, 539
RsaNI	GTAC	2 cut(s)	246, 538
SaqAI	TTAA	3 cut(s)	75, 768, 786
SatI	GCNGC	4 cut(s)	39, 231, 234, 594
Sau3AI	GATC	3 cut(s)	660, 674, 916
Sau96I	GGNCC	4 cut(s)	153, 447, 859, 896
ScrFI	CCNGG	1 cut(s)	904
SduI	GDGCHC	3 cut(s)	673, 800, 1005
SfaNI	GCATC	3 cut(s)	103, 955, 1060
SfcI	CTRYAG	2 cut(s)	717, 969
SinI	GGWCC	3 cut(s)	153, 859, 896
Sse9I	AATT	6 cut(s)	459, 582, 655, 740, 834, 1059
SsiI	CCGC	1 cut(s)	593
SspI	AATATT	1 cut(s)	875
SspMI	CTAG	3 cut(s)	441, 599, 737
StyD4I	CCNGG	1 cut(s)	902
StyI	CCWWGG	2 cut(s)	987, 1005
TaaI	ACNGT	4 cut(s)	537, 721, 759, 781
TaiI	ACGT	2 cut(s)	251, 399
TaqI	TCGA	4 cut(s)	169, 363, 659, 673
TasI	AATT	6 cut(s)	459, 582, 655, 740, 834, 1059
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	4 cut(s)	178, 548, 880, 977
Tru1I	TTAA	3 cut(s)	75, 768, 786
Tru9I	TTAA	3 cut(s)	75, 768, 786
TscAI	CASTG	3 cut(s)	540, 754, 1040
TseFI	GTSAC	2 cut(s)	103, 745
TseI	GCWGC	3 cut(s)	38, 230, 233
Tsp45I	GTSAC	2 cut(s)	103, 745
TspDTI	ATGAA	3 cut(s)	45, 972, 1092
TspGWI	ACGGA	1 cut(s)	752
TspRI	CASTG	3 cut(s)	540, 754, 1040
VpaK11BI	GGWCC	3 cut(s)	153, 859, 896
XagI	CCTNNNNNAGG	1 cut(s)	891
XapI	RAATTY	2 cut(s)	459, 740
XceI	RCATGY	3 cut(s)	206, 689, 949
XcmI	CCANNNNNNNNNTGG	1 cut(s)	910
XspI	CTAG	3 cut(s)	441, 599, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.