Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009236.1

Orthogroup ID

OG0005451

Physical Location & Seq

Genomic Coordinates Forward (+)

15754 .. 19155

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009236.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgccttcggctgtctcgccgcggtggcaagagaaggctactggtttcttttctacctcaggggtgaagattaaggaagctggacaaacggccgggacatttgttgaggaggttacgaaggatgctaaagttaatgtgtctgatatggcagggcgagttgggtcaatgttcaagagccgatgggcgattcttcagcagccatcgactagacaagctgtgcaggagcgccttataaccgctgctgctacgactggcacattgtttaggaagggattgtcggaaacaaaggacaaggtttcggttgggaagatcaaagttgaagaggtggcaaagaagactgcccaaaaaagcaaaaccattctgactgacattgaaagatggcagaagggtgttgcaagcactgatgtttttggagttccgattgaagttaccgtgcaacggcaacaatctagcaggcctattcctcatattttggtgaactgtgcagattatctcatattatcagggctaaacacaccatatctgtttaaaggcgagggagataaaaaagttatccaacaattgatttcgatgtataaccaagattcaaatgcatcaataccagagggtgtaagttcaattgatgtagcggctctagtcaaatgttacctagctacccttcctgagccactaaccacacttgagcttcataatgagatcagaggtgctcgttctagcataaatgcaatgagaaacacgctgaagaagcttcctactgtaaactatacaacactggaatttattactgcactactgctgcgtgttagccagaagtcagttcttaacaagatggacacccaaagtcttgcaatggagatggccccggttataatttggcagaagggtcgggcaccagacctatataaaaagtattggaatcaaccatctaaaggtctttccaagaaaaactcagatccagagcctacttatagtgcatgggacatgctttctgatgaaggtgatactgtagatgattccattcccttggatgatggagtggctattgacttgggcgctatcgaggttgttcagtgtctcatggaacatcacaatgccattttcactgatgcaaatgaaacagtctggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0043087 GO:0044424 GO:0044464 GO:0050790 GO:0051336 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RhoGAP

Protein Analysis

376

Amino Acids

41.5

Weight (kDa)

8.23

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61530 AT5G61530 AT5G61530 AT5G61530 AT5G61530
fragaria_vesca	FvH4_7g27080 FvH4_7g27080
malus_domestica	MD01G1178200.v1.1 MD07G1250400.v1.1
prunus_persica	Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1
pyrus_communis	pycom01g18900 pycom07g22340
rosa_chinensis	RchiOBHm_Chr1g0373901
rosa_laevigata	RLG00000026797
rosa_multiflora	Rmu_sc0009236.1_g000003
rosa_roxburghii	Rroxscaffold_4G00283920
rosa_rugosa	Rorug01G0379600 Rorug01G0379700
rosa_samantha	Rh1AG389800 Rh1BG354100 Rh1CG367200 Rh1DG384800
rosa_wichuraiana	Rw1G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	233, 869
AccB1I	GGYRCC	1 cut(s)	889
AccII	CGCG	1 cut(s)	22
AciI	CCGC	4 cut(s)	20, 22, 237, 629
AclWI	GGATC	1 cut(s)	947
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	776
AcuI	CTGAAG	2 cut(s)	176, 761
AfiI	CCNNNNNNNGG	2 cut(s)	438, 929
AgsI	TTSAA	6 cut(s)	172, 320, 374, 425, 588, 618
AluBI	AGCT	5 cut(s)	80, 215, 653, 685, 748
AluI	AGCT	5 cut(s)	80, 215, 653, 685, 748
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	2 cut(s)	19, 1079
AlwI	GGATC	1 cut(s)	947
AoxI	GGCC	3 cut(s)	90, 455, 858
ApeKI	GCWGC	4 cut(s)	196, 239, 242, 796
ApoI	RAATTY	1 cut(s)	776
AspLEI	GCGC	2 cut(s)	228, 1055
AspS9I	GGNCC	1 cut(s)	859
AsuC2I	CCSGG	2 cut(s)	94, 863
AsuHPI	GGTGA	3 cut(s)	76, 487, 1010
AxyI	CCTNAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	889
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	4 cut(s)	208, 226, 229, 783
BccI	CCATC	7 cut(s)	174, 208, 372, 823, 850, 931, 1025
BceAI	ACGGC	2 cut(s)	105, 455
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BcnI	CCSGG	2 cut(s)	94, 863
BcoDI	GTCTC	2 cut(s)	19, 1079
BfaI	CTAG	5 cut(s)	207, 450, 635, 650, 714
BfmI	CTRYAG	1 cut(s)	1005
BfoI	RGCGCY	2 cut(s)	229, 1056
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	6 cut(s)	20, 197, 240, 243, 630, 797
BlsI	GCNGC	6 cut(s)	21, 198, 241, 244, 631, 798
Bme1390I	CCNGG	2 cut(s)	94, 863
BmgT120I	GGNCC	1 cut(s)	859
BmiI	GGNNCC	2 cut(s)	861, 891
BmrFI	CCNGG	2 cut(s)	94, 863
BmsI	GCATC	3 cut(s)	112, 602, 1096
BpiI	GAAGAC	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	2 cut(s)	94, 863
BsaJI	CCNNGG	3 cut(s)	20, 861, 1023
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 929
Bse1I	ACTGG	3 cut(s)	46, 256, 777
Bse21I	CCTNAGG	1 cut(s)	58
Bse3DI	GCAATG	2 cut(s)	732, 855
BseDI	CCNNGG	3 cut(s)	20, 861, 1023
BseGI	GGATG	2 cut(s)	127, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	438, 929
BseMI	GCAATG	2 cut(s)	732, 855
BseMII	CTCAG	3 cut(s)	72, 654, 963
BseNI	ACTGG	3 cut(s)	46, 256, 777
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	892
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	4 cut(s)	208, 226, 229, 783
BsgI	GTGCAG	3 cut(s)	239, 504, 771
Bsh1236I	CGCG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	92, 457, 860
BshNI	GGYRCC	1 cut(s)	889
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	2 cut(s)	93, 863
BslFI	GGGAC	2 cut(s)	109, 992
BslI	CCNNNNNNNGG	2 cut(s)	438, 929
BsmAI	GTCTC	2 cut(s)	19, 1079
BsmFI	GGGAC	2 cut(s)	109, 992
BsnI	GGCC	3 cut(s)	92, 457, 860
Bsp1286I	GDGCHC	2 cut(s)	709, 892
Bsp143I	GATC	3 cut(s)	309, 696, 952
BspACI	CCGC	4 cut(s)	20, 22, 237, 629
BspANI	GGCC	3 cut(s)	92, 457, 860
BspCNI	CTCAG	3 cut(s)	71, 655, 962
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	861, 891
BspPI	GGATC	1 cut(s)	947
BspT107I	GGYRCC	1 cut(s)	889
BsrDI	GCAATG	2 cut(s)	732, 855
BsrI	ACTGG	3 cut(s)	46, 256, 777
BssECI	CCNNGG	3 cut(s)	20, 861, 1023
BssMI	GATC	3 cut(s)	309, 696, 952
BssT1I	CCWWGG	1 cut(s)	1023
Bst4CI	ACNGT	5 cut(s)	433, 482, 757, 1006, 1120
Bst6I	CTCTTC	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	397, 455
BstDEI	CTNAG	3 cut(s)	58, 663, 949
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	127, 1033
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	2 cut(s)	229, 1056
BstHHI	GCGC	2 cut(s)	228, 1055
BstKTI	GATC	3 cut(s)	312, 699, 955
BstMAI	GTCTC	2 cut(s)	19, 1079
BstMBI	GATC	3 cut(s)	309, 696, 952
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 745
BstNSI	RCATGY	1 cut(s)	985
BstSCI	CCNGG	2 cut(s)	92, 861
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	1 cut(s)	892
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	4 cut(s)	208, 226, 229, 783
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	952
BstXI	CCANNNNNNTGG	1 cut(s)	1024
BstYI	RGATCY	1 cut(s)	952
BstZI	CGGCCG	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	92, 457, 860
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	127, 1033
BtsIMutI	CAGTG	4 cut(s)	399, 770, 1076, 1101
Cac8I	GCNNGC	2 cut(s)	397, 455
CfoI	GCGC	2 cut(s)	228, 1055
Cfr13I	GGNCC	1 cut(s)	859
Cfr42I	CCGCGG	1 cut(s)	23
CviAII	CATG	3 cut(s)	975, 982, 1078
DdeI	CTNAG	3 cut(s)	58, 663, 949
DpnI	GATC	3 cut(s)	311, 698, 954
DpnII	GATC	3 cut(s)	309, 696, 952
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	90
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	1023
Eco147I	AGGCCT	1 cut(s)	457
Eco52I	CGGCCG	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	176, 761
Eco81I	CCTNAGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	1023
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	1023
FaeI	CATG	3 cut(s)	978, 985, 1081
FaqI	GGGAC	2 cut(s)	109, 992
FatI	CATG	3 cut(s)	974, 981, 1077
Fnu4HI	GCNGC	6 cut(s)	20, 197, 240, 243, 630, 797
FokI	GGATG	2 cut(s)	134, 1040
Fsp4HI	GCNGC	6 cut(s)	20, 197, 240, 243, 630, 797
FspBI	CTAG	5 cut(s)	207, 450, 635, 650, 714
GlaI	GCGC	2 cut(s)	227, 1054
GluI	GCNGC	6 cut(s)	20, 197, 240, 243, 630, 797
HaeII	RGCGCY	2 cut(s)	229, 1056
HaeIII	GGCC	3 cut(s)	92, 457, 860
HapII	CCGG	2 cut(s)	93, 863
HhaI	GCGC	2 cut(s)	228, 1055
Hin1II	CATG	3 cut(s)	978, 985, 1081
Hin6I	GCGC	2 cut(s)	226, 1053
HinP1I	GCGC	2 cut(s)	226, 1053
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	4 cut(s)	187, 584, 916, 1013
HpaII	CCGG	2 cut(s)	93, 863
HphI	GGTGA	3 cut(s)	76, 487, 1010
Hpy166II	GTNNAC	2 cut(s)	478, 760
Hpy188I	TCNGA	7 cut(s)	142, 280, 363, 420, 701, 952, 991
Hpy188III	TCNNGA	4 cut(s)	172, 662, 956, 1123
Hpy8I	GTNNAC	2 cut(s)	478, 760
HpyAV	CCTTC	8 cut(s)	15, 28, 112, 262, 379, 668, 874, 989
HpyCH4III	ACNGT	5 cut(s)	433, 482, 757, 1006, 1120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 745
HpyF3I	CTNAG	3 cut(s)	58, 663, 949
Hsp92II	CATG	3 cut(s)	978, 985, 1081
HspAI	GCGC	2 cut(s)	226, 1053
KspI	CCGCGG	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	309, 696, 952
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	4 cut(s)	208, 226, 229, 783
LweI	GCATC	3 cut(s)	112, 602, 1096
MaeI	CTAG	5 cut(s)	207, 450, 635, 650, 714
MaeIII	GTNAC	3 cut(s)	112, 427, 644
MalI	GATC	3 cut(s)	311, 698, 954
MboI	GATC	3 cut(s)	309, 696, 952
MboII	GAAGA	6 cut(s)	79, 182, 319, 332, 346, 754
MfeI	CAATTG	2 cut(s)	560, 618
MflI	RGATCY	1 cut(s)	952
MhlI	GDGCHC	2 cut(s)	709, 892
MluCI	AATT	4 cut(s)	560, 618, 776, 870
MmeI	TCCRAC	2 cut(s)	258, 580
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	4 cut(s)	72, 132, 528, 822
MslI	CAYNNNNRTG	1 cut(s)	1089
MspA1I	CMGCKG	2 cut(s)	22, 239
MspI	CCGG	2 cut(s)	93, 863
MspR9I	CCNGG	2 cut(s)	94, 863
MunI	CAATTG	2 cut(s)	560, 618
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	25, 745
NciI	CCSGG	2 cut(s)	94, 863
NdeII	GATC	3 cut(s)	309, 696, 952
NlaIII	CATG	3 cut(s)	978, 985, 1081
NlaIV	GGNNCC	2 cut(s)	861, 891
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	985
PceI	AGGCCT	1 cut(s)	457
PfeI	GAWTC	4 cut(s)	187, 584, 916, 1013
PkrI	GCNGC	6 cut(s)	21, 198, 241, 244, 631, 798
PsiI	TTATAA	2 cut(s)	233, 869
PspN4I	GGNNCC	2 cut(s)	861, 891
PspPI	GGNCC	1 cut(s)	859
PsuI	RGATCY	1 cut(s)	952
RseI	CAYNNNNRTG	1 cut(s)	1089
SacII	CCGCGG	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	72, 132, 528, 822
SatI	GCNGC	6 cut(s)	20, 197, 240, 243, 630, 797
Sau3AI	GATC	3 cut(s)	309, 696, 952
Sau96I	GGNCC	1 cut(s)	859
ScrFI	CCNGG	2 cut(s)	94, 863
SduI	GDGCHC	2 cut(s)	709, 892
SfaNI	GCATC	3 cut(s)	112, 602, 1096
SfcI	CTRYAG	1 cut(s)	1005
Sfr303I	CCGCGG	1 cut(s)	23
SgrBI	CCGCGG	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	1089
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	4 cut(s)	560, 618, 776, 870
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	4 cut(s)	20, 22, 237, 629
SspMI	CTAG	5 cut(s)	207, 450, 635, 650, 714
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	92, 861
StyI	CCWWGG	1 cut(s)	1023
TaaI	ACNGT	5 cut(s)	433, 482, 757, 1006, 1120
TaqI	TCGA	3 cut(s)	203, 569, 1059
TasI	AATT	4 cut(s)	560, 618, 776, 870
TauI	GCSGC	2 cut(s)	22, 632
TfiI	GAWTC	4 cut(s)	187, 584, 916, 1013
Tru1I	TTAA	4 cut(s)	72, 132, 528, 822
Tru9I	TTAA	4 cut(s)	72, 132, 528, 822
TscAI	CASTG	4 cut(s)	406, 777, 1076, 1108
TseI	GCWGC	4 cut(s)	196, 239, 242, 796
TspDTI	ATGAA	3 cut(s)	677, 1008, 1128
TspRI	CASTG	4 cut(s)	406, 777, 1076, 1108
XapI	RAATTY	1 cut(s)	776
XceI	RCATGY	1 cut(s)	985
XspI	CTAG	5 cut(s)	207, 450, 635, 650, 714
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.