Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005451

Physical Location & Seq

Genomic Coordinates Reverse (-)

27652538 .. 27656896

Gene Structure 4359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G274000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCCTTCTGCAACGTCACCCCGGTGGCAAGAGAAGGCTAGTGGTTTCTTTTCTACCTCGGGGGTGAAGCTTAAAGAAGCTGGACAATCTGCTGGAACATTTGTTGAAGAGGTCACTAAGGATGCAAAAGTTAATGTAACTGATATGGCAGGACGTGTAGGGTCAATGTTCAAAAGTCGGTGGGCGCTTCTTCAGCAACCATCGACAAGACATGCTGTGCAGGAACGCCTTATAACTGCTGCTGCTACGACTGGGACATTGTTTAGGAAGGGCTTATCAGAGACAAAAGACAAGGTTTCTGTTGGGAAGATAAAAGTTGAAGAGGTGGCAAAGAAGACTGCCCAAAAGAGCAAAACTATTTTGAGTGACATTGAAAGATGGCAGAAGGGTGTTGCAAGCACTGATGTTTTTGGAGTTCCAATTGAAGTTACTGTGCAACGGCAACAATCTAGCAGGCCCATTCCTCATATTTTGGTCAAATGTGCAGATTATCTCATATTATCAGGACTAAACACACCATACCTATTTAAAGGGGAGGGTGATAAAAAAGTCATTCAACAATTGGTTTCACTGTACAACCAAGATTCAAATGCATCATTACCAGAGGGAATAAATCCAATTGACGTAGCAGCTCTAATCAAATGTTACCTAGCTACCCTTCCTGAGCCACTAACCACATTTGAGCTTTATAATGAGATCAAAGGTGCTCGTTCCAGCATACATGCGATGAGAAACATGCTGAGGAGGCTTCCAACCGTAAACTACACAACCCTAGAATTTATTACTGCACTACTGCTCCGCGTTAGCCAGAAGTCGGTTCTTAACAAGATGGACACCCAAAGCCTTGCAATGGAGATGGCCCCTGTTCTAATTTGGCAGAAGGGCAGGACACCAGACCTATATAGGAAATATTGGACTGAACCATCAAAAGGTCCTTCCAAGAAGAACTTGGATCCAGAGCCAACTTATAGTGCTTGGGACATGCTTTCTGATGAAGACGATGCTGTAGATGATTCCATTCCCTTGGATGATGGCGTGCCCATTGACTTCGGCGCTATTGAGGTTGTCCAGTGCCTCATGGGACATCACAATGCCATTTTCACAGATGCAAACGAAACAATCTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0043087 GO:0044424 GO:0044464 GO:0050790 GO:0051336 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RhoGAP

Protein Analysis

377

Amino Acids

41.75

Weight (kDa)

8.24

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61530 AT5G61530 AT5G61530 AT5G61530 AT5G61530
fragaria_vesca	FvH4_7g27080 FvH4_7g27080
malus_domestica	MD01G1178200.v1.1 MD07G1250400.v1.1
prunus_persica	Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1 Prupe.2G274000_v2.0.a1
pyrus_communis	pycom01g18900 pycom07g22340
rosa_chinensis	RchiOBHm_Chr1g0373901
rosa_laevigata	RLG00000026797
rosa_multiflora	Rmu_sc0009236.1_g000003
rosa_roxburghii	Rroxscaffold_4G00283920
rosa_rugosa	Rorug01G0379600 Rorug01G0379700
rosa_samantha	Rh1AG389800 Rh1BG354100 Rh1CG367200 Rh1DG384800
rosa_wichuraiana	Rw1G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	233, 690
AccII	CGCG	1 cut(s)	801
AciI	CCGC	1 cut(s)	799
AclWI	GGATC	2 cut(s)	947, 960
AcsI	RAATTY	1 cut(s)	776
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	3 cut(s)	814, 850, 929
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	7 cut(s)	107, 172, 320, 374, 425, 557, 588
AjiI	CACGTC	1 cut(s)	155
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	70, 80, 632, 653, 685
AluI	AGCT	5 cut(s)	70, 80, 632, 653, 685
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	947, 960
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	2 cut(s)	455, 858
ApeKI	GCWGC	3 cut(s)	239, 242, 629
ApoI	RAATTY	1 cut(s)	776
AspLEI	GCGC	2 cut(s)	187, 1055
AspS9I	GGNCC	3 cut(s)	456, 859, 932
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	3 cut(s)	9, 76, 551
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	932
BaeGI	GKGCMC	1 cut(s)	1041
BamHI	GGATCC	1 cut(s)	952
BbsI	GAAGAC	2 cut(s)	341, 1002
Bbv12I	GWGCWC	1 cut(s)	709
BbvCI	CCTCAGC	1 cut(s)	740
BbvI	GCAGC	3 cut(s)	226, 229, 641
BccI	CCATC	6 cut(s)	208, 372, 823, 850, 931, 1025
BceAI	ACGGC	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	4 cut(s)	39, 450, 650, 773
BfmI	CTRYAG	1 cut(s)	1005
BfoI	RGCGCY	2 cut(s)	188, 1056
BisI	GCNGC	3 cut(s)	240, 243, 630
BlsI	GCNGC	3 cut(s)	241, 244, 631
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	932
BmeT110I	CYCGRG	1 cut(s)	58
BmgBI	CACGTC	1 cut(s)	155
BmgT120I	GGNCC	3 cut(s)	456, 859, 932
BmiI	GGNNCC	2 cut(s)	861, 954
BmrFI	CCNGG	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	4 cut(s)	112, 602, 991, 1096
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	2 cut(s)	341, 1002
Bpu10I	CCTNAGC	2 cut(s)	663, 740
BpuMI	CCSGG	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	20, 57, 1023
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	3 cut(s)	814, 850, 929
Bse1I	ACTGG	2 cut(s)	256, 1069
Bse3DI	GCAATG	1 cut(s)	855
BseDI	CCNNGG	3 cut(s)	20, 57, 1023
BseGI	GGATG	2 cut(s)	127, 1033
BseLI	CCNNNNNNNGG	3 cut(s)	814, 850, 929
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	2 cut(s)	654, 731
BseNI	ACTGG	2 cut(s)	256, 1069
BseRI	GAGGAG	1 cut(s)	757
BseSI	GKGCMC	1 cut(s)	1041
BseXI	GCAGC	3 cut(s)	226, 229, 641
BsgI	GTGCAG	3 cut(s)	239, 504, 771
Bsh1236I	CGCG	1 cut(s)	801
BshFI	GGCC	2 cut(s)	457, 860
BsiHKAI	GWGCWC	1 cut(s)	709
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	3 cut(s)	268, 992, 1095
BslI	CCNNNNNNNGG	3 cut(s)	814, 850, 929
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	3 cut(s)	268, 992, 1095
BsnI	GGCC	2 cut(s)	457, 860
BsoBI	CYCGRG	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	709, 1041
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	696, 952
BspACI	CCGC	1 cut(s)	799
BspANI	GGCC	2 cut(s)	457, 860
BspCNI	CTCAG	2 cut(s)	655, 732
BspFNI	CGCG	1 cut(s)	801
BspLI	GGNNCC	2 cut(s)	861, 954
BspPI	GGATC	2 cut(s)	947, 960
BsrDI	GCAATG	1 cut(s)	855
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	256, 1069
BssECI	CCNNGG	3 cut(s)	20, 57, 1023
BssMI	GATC	2 cut(s)	696, 952
BssT1I	CCWWGG	1 cut(s)	1023
Bst4CI	ACNGT	3 cut(s)	433, 573, 757
Bst6I	CTCTTC	2 cut(s)	102, 315
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	3 cut(s)	397, 455, 1037
BstDEI	CTNAG	3 cut(s)	117, 663, 740
BstF5I	GGATG	2 cut(s)	127, 1033
BstFNI	CGCG	1 cut(s)	801
BstH2I	RGCGCY	2 cut(s)	188, 1056
BstHHI	GCGC	2 cut(s)	187, 1055
BstKTI	GATC	2 cut(s)	699, 955
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	696, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 745
BstNSI	RCATGY	4 cut(s)	215, 725, 739, 985
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	1 cut(s)	1041
BstUI	CGCG	1 cut(s)	801
BstV1I	GCAGC	3 cut(s)	226, 229, 641
BstV2I	GAAGAC	2 cut(s)	341, 1002
BstX2I	RGATCY	1 cut(s)	952
BstXI	CCANNNNNNTGG	1 cut(s)	1024
BstYI	RGATCY	1 cut(s)	952
BsuRI	GGCC	2 cut(s)	457, 860
BtgZI	GCGATG	1 cut(s)	740
BtrI	CACGTC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	127, 1033
BtsIMutI	CAGTG	3 cut(s)	399, 569, 1076
Cac8I	GCNNGC	3 cut(s)	397, 455, 1037
CfoI	GCGC	2 cut(s)	187, 1055
Cfr13I	GGNCC	3 cut(s)	456, 859, 932
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	5 cut(s)	212, 722, 736, 982, 1078
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	3 cut(s)	117, 663, 740
DpnI	GATC	2 cut(s)	698, 954
DpnII	GATC	2 cut(s)	696, 952
DraI	TTTAAA	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	102, 315
EarI	CTCTTC	2 cut(s)	102, 315
Eco130I	CCWWGG	1 cut(s)	1023
Eco47I	GGWCC	1 cut(s)	932
Eco57I	CTGAAG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	932
EcoT14I	CCWWGG	1 cut(s)	1023
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	1023
FaeI	CATG	5 cut(s)	215, 725, 739, 985, 1081
FalI	AAGNNNNNCTT	2 cut(s)	932, 964
FaqI	GGGAC	3 cut(s)	268, 992, 1095
FatI	CATG	5 cut(s)	211, 721, 735, 981, 1077
Fnu4HI	GCNGC	3 cut(s)	240, 243, 630
FokI	GGATG	2 cut(s)	134, 1040
Fsp4HI	GCNGC	3 cut(s)	240, 243, 630
FspBI	CTAG	4 cut(s)	39, 450, 650, 773
GlaI	GCGC	2 cut(s)	186, 1054
GluI	GCNGC	3 cut(s)	240, 243, 630
HaeII	RGCGCY	2 cut(s)	188, 1056
HaeIII	GGCC	2 cut(s)	457, 860
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	2 cut(s)	187, 1055
Hin1II	CATG	5 cut(s)	215, 725, 739, 985, 1081
Hin6I	GCGC	2 cut(s)	185, 1053
HinP1I	GCGC	2 cut(s)	185, 1053
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	584, 1013
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	3 cut(s)	9, 76, 551
Hpy166II	GTNNAC	1 cut(s)	760
Hpy188I	TCNGA	2 cut(s)	280, 991
Hpy188III	TCNNGA	4 cut(s)	504, 662, 956, 1123
Hpy8I	GTNNAC	1 cut(s)	760
HpyAV	CCTTC	7 cut(s)	15, 28, 262, 379, 668, 874, 945
HpyCH4III	ACNGT	3 cut(s)	433, 573, 757
HpyCH4IV	ACGT	3 cut(s)	14, 154, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 745
HpyF3I	CTNAG	3 cut(s)	117, 663, 740
HpySE526I	ACGT	3 cut(s)	14, 154, 624
Hsp92II	CATG	5 cut(s)	215, 725, 739, 985, 1081
HspAI	GCGC	2 cut(s)	185, 1053
Kzo9I	GATC	2 cut(s)	696, 952
LmnI	GCTCC	1 cut(s)	801
Lsp1109I	GCAGC	3 cut(s)	226, 229, 641
LweI	GCATC	4 cut(s)	112, 602, 991, 1096
MaeI	CTAG	4 cut(s)	39, 450, 650, 773
MaeII	ACGT	3 cut(s)	14, 154, 624
MaeIII	GTNAC	6 cut(s)	15, 112, 136, 365, 427, 644
MalI	GATC	2 cut(s)	698, 954
MboI	GATC	2 cut(s)	696, 952
MboII	GAAGA	7 cut(s)	119, 182, 319, 332, 346, 955, 1007
MfeI	CAATTG	3 cut(s)	420, 560, 618
MflI	RGATCY	1 cut(s)	952
MhlI	GDGCHC	2 cut(s)	709, 1041
MluCI	AATT	5 cut(s)	420, 560, 618, 776, 870
MmeI	TCCRAC	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	4 cut(s)	72, 132, 528, 822
MslI	CAYNNNNRTG	2 cut(s)	22, 1089
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	22
MunI	CAATTG	3 cut(s)	420, 560, 618
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	2 cut(s)	193, 745
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	696, 952
NlaIII	CATG	5 cut(s)	215, 725, 739, 985, 1081
NlaIV	GGNNCC	2 cut(s)	861, 954
NmuCI	GTSAC	3 cut(s)	15, 112, 365
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	4 cut(s)	215, 725, 739, 985
OliI	CACNNNNGTG	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	584, 1013
PkrI	GCNGC	3 cut(s)	241, 244, 631
PpuMI	RGGWCCY	1 cut(s)	932
PsiI	TTATAA	2 cut(s)	233, 690
Psp5II	RGGWCCY	1 cut(s)	932
PspN4I	GGNNCC	2 cut(s)	861, 954
PspPI	GGNCC	3 cut(s)	456, 859, 932
PspPPI	RGGWCCY	1 cut(s)	932
PsuI	RGATCY	1 cut(s)	952
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	2 cut(s)	22, 1089
SaqAI	TTAA	4 cut(s)	72, 132, 528, 822
SatI	GCNGC	3 cut(s)	240, 243, 630
Sau3AI	GATC	2 cut(s)	696, 952
Sau96I	GGNCC	3 cut(s)	456, 859, 932
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	709, 1041
SfaNI	GCATC	4 cut(s)	112, 602, 991, 1096
SfcI	CTRYAG	1 cut(s)	1005
SinI	GGWCC	1 cut(s)	932
SmiMI	CAYNNNNRTG	2 cut(s)	22, 1089
Sse9I	AATT	5 cut(s)	420, 560, 618, 776, 870
SsiI	CCGC	1 cut(s)	799
SspI	AATATT	1 cut(s)	911
SspMI	CTAG	4 cut(s)	39, 450, 650, 773
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	1023
TaaI	ACNGT	3 cut(s)	433, 573, 757
TaiI	ACGT	3 cut(s)	17, 157, 627
TaqI	TCGA	1 cut(s)	203
TasI	AATT	5 cut(s)	420, 560, 618, 776, 870
TatI	WGTACW	1 cut(s)	573
TfiI	GAWTC	2 cut(s)	584, 1013
Tru1I	TTAA	4 cut(s)	72, 132, 528, 822
Tru9I	TTAA	4 cut(s)	72, 132, 528, 822
TscAI	CASTG	3 cut(s)	406, 576, 1076
TseFI	GTSAC	3 cut(s)	15, 112, 365
TseI	GCWGC	3 cut(s)	239, 242, 629
Tsp45I	GTSAC	3 cut(s)	15, 112, 365
TspDTI	ATGAA	1 cut(s)	1008
TspRI	CASTG	3 cut(s)	406, 576, 1076
VpaK11BI	GGWCC	1 cut(s)	932
XapI	RAATTY	1 cut(s)	776
XceI	RCATGY	4 cut(s)	215, 725, 739, 985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	946
XspI	CTAG	4 cut(s)	39, 450, 650, 773
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.