Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012204

Physical Location & Seq

Genomic Coordinates Forward (+)

21441095 .. 21443579

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTAGCTCTGAGCTGCCAGTTTCAACCTCTTGTCTGCAAGAGTTATCGCAGCAATCGTAGAACTAGACCTTCTGCCTTTTGCTCAATGCAACCGTCTCAGAACAACATCAAGGTCATTATAAATGGAGCTGCAAAGGAAATAGGAAGGGCTGCAGTGATTGCAGTGACCAGAGCTCGAGGGATGGAGGTTGCCGGGGCAGTGGATTCGTATCTTGTAGGAGAAGATATTGGGAATGTATGTGACATGGCGGAGCCGCTGGAGATACCGATAACGAATGATCTGACCATGGTCTTAGGTTCCATATCACAGTCTAAAGCAACAGGAGTAGTTGTGGATTTTACTGACCCTTCCAAAGTTTATGACAATGTGAAGCAGGCAACAGCATTTGGGATGAGAAGTGTGGTTTATGTGCCAAAGATTAAGTTAGATACAGTATCAGCATTATCTGCATTCTGTGAGAAAGCCAGCATGGGTTGTCTTGTCGCACCGACTCTGTCTATTGGATCTATACTCCTCCAACAAGCTGCGATTTCAGCTTCCTTTCACTTTAACAATGTAGAAATTGTAGAATCAAGAGCTAACGCAACGGATCTTCCATCATCAGATGCGACCCAAATTGCCAACAACCTCTCTAACCTTGGCCAGATATATAACAGAGAAGACATTTCAACAGATGTTAAGGCAAGGGGTCAAGTTCTGGGTGAAGATGGAGTTCGTGTGCATAGTTTAGTCCTTCCTGGGCTCCCCTCCAGTACAACAGTCTACTTTTCTCGCCCAGGAGAGGTTTACACTCTGAAACACGATATCACAGATGTGCAAAGTCTCATGCCAGGCCTTATCTTAGCTATCAGAAAGATTGTTCGCATCAAGAGCCTGGTGTATGGCTTAGAGAAACTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0019684 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

302

Amino Acids

32.34

Weight (kDa)

8.17

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	37 - 164	3.1e-14	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	171 - 301	6.7e-19	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52100
fragaria_vesca	FvH4_7g29020 FvH4_7g29020
malus_domestica	MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica	Prupe.2G290400_v2.0.a1
pyrus_communis	pycom01g20750 pycom07g24300
rosa_chinensis	RchiOBHm_Chr1g0376731
rosa_laevigata	RLG00000026575
rosa_multiflora	Rmu_sc0003609.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281840
rosa_rugosa	Rorug01G0397900
rosa_samantha	Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana	Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	765
AciI	CCGC	2 cut(s)	251, 257
AclWI	GGATC	2 cut(s)	514, 600
AcoI	YGGCCR	1 cut(s)	643
AfaI	GTAC	1 cut(s)	757
AfiI	CCNNNNNNNGG	1 cut(s)	784
AgsI	TTSAA	2 cut(s)	26, 672
AjnI	CCWGG	4 cut(s)	739, 778, 832, 876
AleI	CACNNNNGTG	1 cut(s)	815
AluBI	AGCT	8 cut(s)	8, 15, 131, 176, 527, 539, 581, 848
AluI	AGCT	8 cut(s)	8, 15, 131, 176, 527, 539, 581, 848
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	102, 830
AlwI	GGATC	2 cut(s)	514, 600
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	2 cut(s)	643, 835
ApeKI	GCWGC	5 cut(s)	15, 51, 131, 152, 527
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	645
BanII	GRGCYC	2 cut(s)	178, 747
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	5 cut(s)	2, 63, 118, 139, 514
BccI	CCATC	3 cut(s)	178, 607, 704
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BciT130I	CCWGG	4 cut(s)	741, 780, 834, 878
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	102, 830
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	153
BisI	GCNGC	6 cut(s)	16, 52, 132, 153, 257, 528
BlsI	GCNGC	6 cut(s)	17, 53, 133, 154, 258, 529
Bme1390I	CCNGG	5 cut(s)	196, 741, 780, 834, 878
BmeT110I	CYCGRG	1 cut(s)	177
BmiI	GGNNCC	3 cut(s)	255, 301, 746
BmrFI	CCNGG	5 cut(s)	196, 741, 780, 834, 878
BmsI	GCATC	2 cut(s)	598, 876
BoxI	GACNNNNGTC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	2 cut(s)	281, 736
BpuMI	CCSGG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	5 cut(s)	195, 288, 640, 740, 778
BsaXI	ACNNNNNCTCC	4 cut(s)	318, 348, 705, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse1I	ACTGG	2 cut(s)	19, 753
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	4 cut(s)	741, 780, 834, 878
BseDI	CCNNGG	5 cut(s)	195, 288, 640, 740, 778
BseGI	GGATG	2 cut(s)	189, 399
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	19, 753
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	5 cut(s)	2, 63, 118, 139, 514
BshFI	GGCC	2 cut(s)	645, 837
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	784
BsmAI	GTCTC	2 cut(s)	102, 830
BsmBI	CGTCTC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	2 cut(s)	645, 837
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	178, 747
Bsp143I	GATC	3 cut(s)	280, 506, 592
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	2 cut(s)	251, 257
BspANI	GGCC	2 cut(s)	645, 837
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	255, 301, 746
BspMAI	CTGCAG	1 cut(s)	157
BspPI	GGATC	2 cut(s)	514, 600
BsrI	ACTGG	2 cut(s)	19, 753
BssECI	CCNNGG	5 cut(s)	195, 288, 640, 740, 778
BssMI	GATC	3 cut(s)	280, 506, 592
BssT1I	CCWWGG	2 cut(s)	288, 640
Bst2UI	CCWGG	4 cut(s)	741, 780, 834, 878
Bst4CI	ACNGT	4 cut(s)	96, 312, 436, 763
BstAPI	GCANNNNNTGC	2 cut(s)	161, 449
BstC8I	GCNNGC	2 cut(s)	378, 469
BstDEI	CTNAG	5 cut(s)	11, 99, 295, 844, 889
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	189, 399
BstKTI	GATC	3 cut(s)	283, 509, 595
BstMAI	GTCTC	2 cut(s)	102, 830
BstMBI	GATC	3 cut(s)	280, 506, 592
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 449, 536, 873
BstNI	CCWGG	4 cut(s)	741, 780, 834, 878
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	5 cut(s)	194, 739, 778, 832, 876
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	5 cut(s)	2, 63, 118, 139, 514
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	2 cut(s)	506, 592
BstYI	RGATCY	2 cut(s)	506, 592
BsuRI	GGCC	2 cut(s)	645, 837
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	189, 399
BtsI	GCAGTG	3 cut(s)	162, 171, 207
BtsIMutI	CAGTG	3 cut(s)	162, 171, 207
Cac8I	GCNNGC	2 cut(s)	378, 469
Csp6I	GTAC	1 cut(s)	756
CviAII	CATG	4 cut(s)	247, 289, 472, 829
CviQI	GTAC	1 cut(s)	756
DdeI	CTNAG	5 cut(s)	11, 99, 295, 844, 889
DpnI	GATC	3 cut(s)	282, 508, 594
DpnII	GATC	3 cut(s)	280, 506, 592
EaeI	YGGCCR	1 cut(s)	643
EciI	GGCGGA	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	288, 640
Eco147I	AGGCCT	1 cut(s)	837
Eco24I	GRGCYC	2 cut(s)	178, 747
Eco32I	GATATC	1 cut(s)	808
Eco53kI	GAGCTC	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	176
EcoRII	CCWGG	4 cut(s)	739, 778, 832, 876
EcoRV	GATATC	1 cut(s)	808
EcoT14I	CCWWGG	2 cut(s)	288, 640
EcoT38I	GRGCYC	2 cut(s)	178, 747
ErhI	CCWWGG	2 cut(s)	288, 640
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	4 cut(s)	250, 292, 475, 832
FatI	CATG	4 cut(s)	246, 288, 471, 828
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	6 cut(s)	16, 52, 132, 153, 257, 528
FokI	GGATG	2 cut(s)	196, 406
FriOI	GRGCYC	2 cut(s)	178, 747
Fsp4HI	GCNGC	6 cut(s)	16, 52, 132, 153, 257, 528
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	6 cut(s)	16, 52, 132, 153, 257, 528
GsuI	CTGGAG	2 cut(s)	281, 736
HaeIII	GGCC	2 cut(s)	645, 837
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	4 cut(s)	250, 292, 475, 832
HinfI	GANTC	3 cut(s)	206, 493, 572
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	2 cut(s)	766, 790
Hpy188I	TCNGA	6 cut(s)	12, 102, 285, 607, 798, 854
Hpy188III	TCNNGA	2 cut(s)	576, 871
Hpy8I	GTNNAC	2 cut(s)	766, 790
HpyAV	CCTTC	4 cut(s)	81, 141, 360, 746
HpyCH4III	ACNGT	4 cut(s)	96, 312, 436, 763
HpyCH4V	TGCA	8 cut(s)	39, 91, 134, 155, 164, 452, 724, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 449, 536, 873
HpyF3I	CTNAG	5 cut(s)	11, 99, 295, 844, 889
Hsp92II	CATG	4 cut(s)	250, 292, 475, 832
Kzo9I	GATC	3 cut(s)	280, 506, 592
LmnI	GCTCC	3 cut(s)	128, 253, 750
Lsp1109I	GCAGC	5 cut(s)	2, 63, 118, 139, 514
LweI	GCATC	2 cut(s)	598, 876
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	166, 242
MalI	GATC	3 cut(s)	282, 508, 594
MboI	GATC	3 cut(s)	280, 506, 592
MboII	GAAGA	4 cut(s)	236, 587, 674, 719
MflI	RGATCY	2 cut(s)	506, 592
MhlI	GDGCHC	2 cut(s)	178, 747
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	2 cut(s)	564, 618
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	7 cut(s)	39, 173, 181, 527, 641, 760, 778
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	3 cut(s)	423, 552, 681
MslI	CAYNNNNRTG	1 cut(s)	815
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	5 cut(s)	196, 741, 780, 834, 878
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	4 cut(s)	741, 780, 834, 878
MwoI	GCNNNNNNNGC	4 cut(s)	161, 449, 536, 873
NciI	CCSGG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	280, 506, 592
NlaIII	CATG	4 cut(s)	250, 292, 475, 832
NlaIV	GGNNCC	3 cut(s)	255, 301, 746
NmuCI	GTSAC	2 cut(s)	166, 242
OliI	CACNNNNGTG	1 cut(s)	815
PaeR7I	CTCGAG	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PctI	GAATGC	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	206, 572
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	6 cut(s)	17, 53, 133, 154, 258, 529
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PshAI	GACNNNNGTC	1 cut(s)	290
PsiI	TTATAA	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	178
Psp6I	CCWGG	4 cut(s)	739, 778, 832, 876
PspGI	CCWGG	4 cut(s)	739, 778, 832, 876
PspN4I	GGNNCC	3 cut(s)	255, 301, 746
PspXI	VCTCGAGB	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	506, 592
PsyI	GACNNNGTC	1 cut(s)	496
RsaI	GTAC	1 cut(s)	757
RsaNI	GTAC	1 cut(s)	756
RseI	CAYNNNNRTG	1 cut(s)	815
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	3 cut(s)	423, 552, 681
SatI	GCNGC	6 cut(s)	16, 52, 132, 153, 257, 528
Sau3AI	GATC	3 cut(s)	280, 506, 592
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	5 cut(s)	196, 741, 780, 834, 878
SduI	GDGCHC	2 cut(s)	178, 747
SfaNI	GCATC	2 cut(s)	598, 876
SfcI	CTRYAG	1 cut(s)	153
Sfr274I	CTCGAG	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	564, 618
SseBI	AGGCCT	1 cut(s)	837
SsiI	CCGC	2 cut(s)	251, 257
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	178
StuI	AGGCCT	1 cut(s)	837
StyD4I	CCNGG	5 cut(s)	194, 739, 778, 832, 876
StyI	CCWWGG	2 cut(s)	288, 640
TaaI	ACNGT	4 cut(s)	96, 312, 436, 763
TaqI	TCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	564, 618
TatI	WGTACW	1 cut(s)	755
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	206, 572
Tru1I	TTAA	3 cut(s)	423, 552, 681
Tru9I	TTAA	3 cut(s)	423, 552, 681
TscAI	CASTG	3 cut(s)	162, 171, 207
TseFI	GTSAC	2 cut(s)	166, 242
TseI	GCWGC	5 cut(s)	15, 51, 131, 152, 527
Tsp45I	GTSAC	2 cut(s)	166, 242
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	3 cut(s)	162, 171, 207
Tth111I	GACNNNGTC	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	765
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.