Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012204

Physical Location & Seq

Genomic Coordinates Forward (+)

28448814 .. 28450910

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G290400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCAGTAGGCCTGAGCTGCCAATTTCACTCTCTGGCCTGCAAGACTTATCAACATCCCAATGCCAAATCAAGACCTTCCATGTTTTGCTCAATGCAACCTCCTCAGAACAACATCAAGGTAATTATAAATGGAGCAGCAAAGGAAATAGGAAGGGCGGCTGTAATTGCAGTGACTAGAGCCAGAGGGATGGAGGTGGCTGGTGCAGTGGATTCTTATCTAGTAGGAGAAGATATTGGCAAGGTGTGTGACATGGAAGAGCCTCTGGAAATACCAATAACCAATGATCTCACAATGGTCTTAGGCTCCATTTCTCAGTCCAAAGCATTGGGGGTAGTTGTTGATTTCACTGAGCCTTCCAAAGTCTATGACAATGTAAAACAGGCAACAGCATTTGGGATGAGAAGTGTGGTTTATGTGCCTCAGATTAAGTTAGAAACAGTATCAGCATTATCTGCATTCTGTGAGAAAGCCAGCATGGGTTGTCTTGTTGCACCAACTCTATCCATTGGGTCTATACTCCTACAACAAGCTGCAATTTCAGCTTCCTTCCACTACAACAATGTAGAAATCGTCGAATCAAGGGCAACTGCAACGGATTTTCCATCATCAGATGCAACCCAAATTGCCAACAACCTGTCTAACCTTGGCCAGATTTACAACAGAGAAGATATTTCAACAGATGTTCAAGCAAGGGGCCAAGTTCTGGGAGAAGATGGAGTTCGTGTGCACAGCTTAGTCCTTCCAGGGCTTCCTGCCAGCACAACGGTTTACTTTTCTCGTCTAGGAGAGGTTTACTCTCTGAAACATGACATCACAGATGTGCAATGTCTCATGCCAGGCCTCCTCCTAGCAATTAGAAAGATTGTGCGCATTAAGAACCTGGTGTATGGGTTGGAGAAATTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0019684 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

304

Amino Acids

32.66

Weight (kDa)

6.22

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52100
fragaria_vesca	FvH4_7g29020 FvH4_7g29020
malus_domestica	MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica	Prupe.2G290400_v2.0.a1
pyrus_communis	pycom01g20750 pycom07g24300
rosa_chinensis	RchiOBHm_Chr1g0376731
rosa_laevigata	RLG00000026575
rosa_multiflora	Rmu_sc0003609.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281840
rosa_rugosa	Rorug01G0397900
rosa_samantha	Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana	Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	128, 910
Acc16I	TGCGCA	1 cut(s)	872
AccB7I	CCANNNNNTGG	1 cut(s)	706
AciI	CCGC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	902
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgsI	TTSAA	2 cut(s)	678, 689
AjnI	CCWGG	3 cut(s)	745, 838, 882
AleI	CACNNNNGTG	1 cut(s)	821
AluBI	AGCT	4 cut(s)	18, 533, 545, 735
AluI	AGCT	4 cut(s)	18, 533, 545, 735
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	1 cut(s)	836
Alw44I	GTGCAC	1 cut(s)	728
AoxI	GGCC	5 cut(s)	10, 36, 649, 697, 841
ApaLI	GTGCAC	1 cut(s)	728
ApeKI	GCWGC	3 cut(s)	18, 137, 533
ApoI	RAATTY	1 cut(s)	902
AspLEI	GCGC	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	697
BaeGI	GKGCMC	1 cut(s)	732
BalI	TGGCCA	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	3 cut(s)	5, 149, 520
BccI	CCATC	3 cut(s)	184, 613, 710
BciT130I	CCWGG	3 cut(s)	747, 840, 884
BcoDI	GTCTC	1 cut(s)	836
BfaI	CTAG	4 cut(s)	177, 221, 785, 851
BisI	GCNGC	4 cut(s)	19, 138, 159, 534
BlsI	GCNGC	4 cut(s)	20, 139, 160, 535
Bme1390I	CCNGG	3 cut(s)	747, 840, 884
BmgT120I	GGNCC	1 cut(s)	697
BmiI	GGNNCC	2 cut(s)	307, 698
BmrFI	CCNGG	3 cut(s)	747, 840, 884
BmsI	GCATC	1 cut(s)	604
BplI	GAGNNNNNCTC	2 cut(s)	782, 814
Bpu10I	CCTNAGC	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	646, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse3DI	GCAATG	1 cut(s)	833
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	3 cut(s)	747, 840, 884
BseDI	CCNNGG	2 cut(s)	646, 746
BseGI	GGATG	3 cut(s)	55, 195, 405
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	5 cut(s)	5, 119, 329, 342, 437
BseRI	GAGGAG	2 cut(s)	93, 836
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	3 cut(s)	5, 149, 520
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	5 cut(s)	12, 38, 651, 699, 843
BsiHKAI	GWGCWC	1 cut(s)	732
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	1 cut(s)	836
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	5 cut(s)	12, 38, 651, 699, 843
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	5 cut(s)	12, 38, 651, 699, 843
BspCNI	CTCAG	5 cut(s)	6, 118, 328, 343, 436
BspLI	GGNNCC	2 cut(s)	307, 698
BspQI	GCTCTTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	833
BssECI	CCNNGG	2 cut(s)	646, 746
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	646
Bst2UI	CCWGG	3 cut(s)	747, 840, 884
Bst4CI	ACNGT	2 cut(s)	442, 769
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	3 cut(s)	40, 475, 760
BstDEI	CTNAG	7 cut(s)	14, 105, 301, 315, 351, 423, 736
BstF5I	GGATG	3 cut(s)	55, 195, 405
BstHHI	GCGC	1 cut(s)	873
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	836
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 167, 455, 542
BstNI	CCWGG	3 cut(s)	747, 840, 884
BstSCI	CCNGG	3 cut(s)	745, 838, 882
BstSLI	GKGCMC	1 cut(s)	732
BstV1I	GCAGC	3 cut(s)	5, 149, 520
BstXI	CCANNNNNNTGG	2 cut(s)	190, 328
BsuRI	GGCC	5 cut(s)	12, 38, 651, 699, 843
BtsCI	GGATG	3 cut(s)	55, 195, 405
BtsI	GCAGTG	2 cut(s)	177, 213
BtsIMutI	CAGTG	3 cut(s)	177, 213, 348
Cac8I	GCNNGC	3 cut(s)	40, 475, 760
CfoI	GCGC	1 cut(s)	873
Cfr13I	GGNCC	1 cut(s)	697
CsiI	ACCWGGT	1 cut(s)	882
CviAII	CATG	5 cut(s)	82, 253, 478, 809, 835
DdeI	CTNAG	7 cut(s)	14, 105, 301, 315, 351, 423, 736
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	646
Eco147I	AGGCCT	2 cut(s)	12, 843
EcoRII	CCWGG	3 cut(s)	745, 838, 882
EcoT14I	CCWWGG	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	5 cut(s)	85, 256, 481, 812, 838
FatI	CATG	5 cut(s)	81, 252, 477, 808, 834
Fnu4HI	GCNGC	4 cut(s)	19, 138, 159, 534
FokI	GGATG	3 cut(s)	42, 202, 412
Fsp4HI	GCNGC	4 cut(s)	19, 138, 159, 534
FspAI	RTGCGCAY	1 cut(s)	872
FspBI	CTAG	4 cut(s)	177, 221, 785, 851
FspI	TGCGCA	1 cut(s)	872
GlaI	GCGC	1 cut(s)	872
GluI	GCNGC	4 cut(s)	19, 138, 159, 534
HaeIII	GGCC	5 cut(s)	12, 38, 651, 699, 843
HhaI	GCGC	1 cut(s)	873
Hin1II	CATG	5 cut(s)	85, 256, 481, 812, 838
Hin6I	GCGC	1 cut(s)	871
HinP1I	GCGC	1 cut(s)	871
HinfI	GANTC	2 cut(s)	212, 578
Hpy166II	GTNNAC	3 cut(s)	730, 772, 796
Hpy188I	TCNGA	4 cut(s)	108, 426, 613, 804
Hpy188III	TCNNGA	2 cut(s)	72, 266
Hpy8I	GTNNAC	3 cut(s)	730, 772, 796
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	5 cut(s)	87, 147, 366, 559, 752
HpyCH4III	ACNGT	2 cut(s)	442, 769
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 167, 455, 542
HpyF3I	CTNAG	7 cut(s)	14, 105, 301, 315, 351, 423, 736
Hsp92II	CATG	5 cut(s)	85, 256, 481, 812, 838
HspAI	GCGC	1 cut(s)	871
Kzo9I	GATC	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	134, 311
Lsp1109I	GCAGC	3 cut(s)	5, 149, 520
LweI	GCATC	1 cut(s)	604
MabI	ACCWGGT	1 cut(s)	882
MaeI	CTAG	4 cut(s)	177, 221, 785, 851
MaeIII	GTNAC	2 cut(s)	172, 248
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	4 cut(s)	242, 269, 680, 725
MhlI	GDGCHC	1 cut(s)	732
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	7 cut(s)	23, 123, 165, 537, 624, 855, 902
MluNI	TGGCCA	1 cut(s)	651
MmeI	TCCRAC	1 cut(s)	876
MnlI	CCTC	9 cut(s)	111, 114, 179, 187, 273, 432, 784, 854, 857
Mox20I	TGGCCA	1 cut(s)	651
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	2 cut(s)	429, 876
MslI	CAYNNNNRTG	2 cut(s)	60, 821
Msp20I	TGGCCA	1 cut(s)	651
MspR9I	CCNGG	3 cut(s)	747, 840, 884
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	3 cut(s)	747, 840, 884
MwoI	GCNNNNNNNGC	4 cut(s)	18, 167, 455, 542
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	5 cut(s)	85, 256, 481, 812, 838
NlaIV	GGNNCC	2 cut(s)	307, 698
NmuCI	GTSAC	2 cut(s)	172, 248
NsbI	TGCGCA	1 cut(s)	872
OliI	CACNNNNGTG	1 cut(s)	821
PceI	AGGCCT	2 cut(s)	12, 843
PciSI	GCTCTTC	1 cut(s)	252
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	212, 578
PflMI	CCANNNNNTGG	1 cut(s)	706
PkrI	GCNGC	4 cut(s)	20, 139, 160, 535
PsiI	TTATAA	2 cut(s)	128, 910
Psp6I	CCWGG	3 cut(s)	745, 838, 882
PspGI	CCWGG	3 cut(s)	745, 838, 882
PspN4I	GGNNCC	2 cut(s)	307, 698
PspPI	GGNCC	1 cut(s)	697
RseI	CAYNNNNRTG	2 cut(s)	60, 821
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	429, 876
SatI	GCNGC	4 cut(s)	19, 138, 159, 534
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	697
ScrFI	CCNGG	3 cut(s)	747, 840, 884
SduI	GDGCHC	1 cut(s)	732
SexAI	ACCWGGT	1 cut(s)	882
SfaNI	GCATC	1 cut(s)	604
SmiMI	CAYNNNNRTG	2 cut(s)	60, 821
Sse9I	AATT	7 cut(s)	23, 123, 165, 537, 624, 855, 902
SseBI	AGGCCT	2 cut(s)	12, 843
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	4 cut(s)	177, 221, 785, 851
StuI	AGGCCT	2 cut(s)	12, 843
StyD4I	CCNGG	3 cut(s)	745, 838, 882
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	2 cut(s)	442, 769
TaqI	TCGA	1 cut(s)	576
TasI	AATT	7 cut(s)	23, 123, 165, 537, 624, 855, 902
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	212, 578
Tru1I	TTAA	2 cut(s)	429, 876
Tru9I	TTAA	2 cut(s)	429, 876
TscAI	CASTG	3 cut(s)	177, 213, 355
TseFI	GTSAC	2 cut(s)	172, 248
TseI	GCWGC	3 cut(s)	18, 137, 533
Tsp45I	GTSAC	2 cut(s)	172, 248
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	3 cut(s)	177, 213, 355
Van91I	CCANNNNNTGG	1 cut(s)	706
VneI	GTGCAC	1 cut(s)	728
XapI	RAATTY	1 cut(s)	902
XspI	CTAG	4 cut(s)	177, 221, 785, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.