Rh1AG415200

Dihydrodipicolinate reductase, C-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012204
Physical Location & Seq
Forward (+)
64727347 .. 64728975
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG415200.1

Sequence Viewer

Length: 795 bp
ATGGTAGCTTTGAGCTGCCAGTTTCAACCTGTGGTCTGCAAGAGTTATCGGAATGGTAGAGCTAGACCTTCTGCTCTTTGCTCAATGCAACCGTCTCAAAACAATATCAAGGTAATAATAAATGGAGCTGCAAAGGAAATAGGGAGGGCAGCAGTGATGGCCGTGACCAGAGCTCGAGGGATGGAGGTGGCCGGTGCAGTGGATTCGTATCTTGTTGGAGAAGATATTGGGAATGTATGTGACATGGCGGAGCCATTGGAGATACCGTTAACGAATGATCTCACCATGGTCTTAGGTTCCATATCGCAGTCTAAAGCAACAGGAGTAGTTGTGGATTTCACTGACCCTTCCAAAGTTTATGACAATGTGAAGCAGGCAACAGCATTTGGAATGAGGAGTGTGGTTTATGTGCCAAAAATTAAGTTAGATACAGTATCAGCATTATCTGCACTCTGTGAGAAAGCCAGCATGGGTTGTCTTGTCGCACCGACTCTTTCTATTGGATCTATACTCCTCCAACAGGCTGCAATTTCAGCTTCCTTTCACTATAACAATGTAGAAATTGTAGAATCAAGAGCTAATGCAACGGATCTTCCATCATCAGATGCAACCCAAATTGCCAACAACCTCTCTAACCTTGGCCAGATCTATAACAGAGAAGACATTTCAACAGACGTTAAGGCAAGGGGTCAAGTTTTGGGTGAAGACGGAGTTCGTGTGCATAGCTTAGTCCTTCCAGGGCTTCCCTCCAGTACAACAGTCTACTTCTCTCGCCCAGGAGAGGTGTGTTTCTGA

Protein Analysis

264

Amino Acids

27.99

Weight (kDa)

5.75

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DapB_N PF01113 36 - 163 3e-14 Dihydrodipicolinate reductase, N-terminus
DapB_C PF05173 170 - 262 4e-08 Dihydrodipicolinate reductase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52100
fragaria_vesca FvH4_7g29020 FvH4_7g29020
malus_domestica MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica Prupe.2G290400_v2.0.a1
pyrus_communis pycom01g20750 pycom07g24300
rosa_chinensis RchiOBHm_Chr1g0376731
rosa_laevigata RLG00000026575
rosa_multiflora Rmu_sc0003609.1_g000003
rosa_roxburghii Rroxscaffold_4G00281840
rosa_rugosa Rorug01G0397900
rosa_samantha Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 762
AciI CCGC 1 cut(s) 248
AclWI GGATC 2 cut(s) 511, 597
AcoI YGGCCR 3 cut(s) 159, 189, 640
AdeI CACNNNGTG 1 cut(s) 455
AfaI GTAC 1 cut(s) 754
AfiI CCNNNNNNNGG 2 cut(s) 520, 781
AgsI TTSAA 2 cut(s) 26, 669
AjnI CCWGG 2 cut(s) 736, 775
AluBI AGCT 8 cut(s) 8, 15, 62, 128, 173, 536, 578, 726
AluI AGCT 8 cut(s) 8, 15, 62, 128, 173, 536, 578, 726
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 2 cut(s) 511, 597
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 3 cut(s) 159, 189, 640
ApeKI GCWGC 4 cut(s) 15, 128, 149, 524
AsuHPI GGTGA 2 cut(s) 274, 713
AvaI CYCGRG 1 cut(s) 174
BalI TGGCCA 1 cut(s) 642
BanII GRGCYC 1 cut(s) 175
BbsI GAAGAC 2 cut(s) 666, 711
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 4 cut(s) 2, 115, 161, 511
BccI CCATC 3 cut(s) 151, 175, 604
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 2 cut(s) 738, 777
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 63
BglII AGATCT 1 cut(s) 645
BisI GCNGC 4 cut(s) 16, 129, 150, 525
BlsI GCNGC 4 cut(s) 17, 130, 151, 526
Bme1390I CCNGG 2 cut(s) 738, 777
BmeT110I CYCGRG 1 cut(s) 174
BmiI GGNNCC 2 cut(s) 252, 298
BmrFI CCNGG 2 cut(s) 738, 777
BmsI GCATC 1 cut(s) 595
BpiI GAAGAC 2 cut(s) 666, 711
BpmI CTGGAG 1 cut(s) 733
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 4 cut(s) 285, 637, 737, 775
BsaXI ACNNNNNCTCC 6 cut(s) 251, 281, 315, 345, 702, 732
Bsc4I CCNNNNNNNGG 2 cut(s) 520, 781
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 19, 750
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 2 cut(s) 738, 777
BseDI CCNNGG 4 cut(s) 285, 637, 737, 775
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 520, 781
BseNI ACTGG 2 cut(s) 19, 750
BseRI GAGGAG 2 cut(s) 409, 503
BseXI GCAGC 4 cut(s) 2, 115, 161, 511
BsgI GTGCAG 2 cut(s) 216, 432
BshFI GGCC 3 cut(s) 161, 191, 642
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 520, 781
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 3 cut(s) 161, 191, 642
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 4 cut(s) 277, 503, 589, 645
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 1 cut(s) 248
BspANI GGCC 3 cut(s) 161, 191, 642
BspLI GGNNCC 2 cut(s) 252, 298
BspPI GGATC 2 cut(s) 511, 597
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 2 cut(s) 19, 750
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 4 cut(s) 285, 637, 737, 775
BssMI GATC 4 cut(s) 277, 503, 589, 645
BssT1I CCWWGG 2 cut(s) 285, 637
Bst2UI CCWGG 2 cut(s) 738, 777
Bst4CI ACNGT 4 cut(s) 93, 267, 433, 760
BstAPI GCANNNNNTGC 1 cut(s) 446
BstC8I GCNNGC 2 cut(s) 375, 466
BstDEI CTNAG 2 cut(s) 292, 727
BstDSI CCRYGG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 518
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 4 cut(s) 280, 506, 592, 648
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 4 cut(s) 277, 503, 589, 645
BstMWI GCNNNNNNNGC 3 cut(s) 158, 446, 533
BstNI CCWGG 2 cut(s) 738, 777
BstSCI CCNGG 2 cut(s) 736, 775
BstV1I GCAGC 4 cut(s) 2, 115, 161, 511
BstV2I GAAGAC 2 cut(s) 666, 711
BstX2I RGATCY 3 cut(s) 503, 589, 645
BstYI RGATCY 3 cut(s) 503, 589, 645
BsuRI GGCC 3 cut(s) 161, 191, 642
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 2 cut(s) 159, 204
BtsIMutI CAGTG 3 cut(s) 159, 204, 339
Cac8I GCNNGC 2 cut(s) 375, 466
Cfr10I RCCGGY 1 cut(s) 191
Csp6I GTAC 1 cut(s) 753
CviAII CATG 3 cut(s) 244, 286, 469
CviQI GTAC 1 cut(s) 753
DdeI CTNAG 2 cut(s) 292, 727
DpnI GATC 4 cut(s) 279, 505, 591, 647
DpnII GATC 4 cut(s) 277, 503, 589, 645
DraIII CACNNNGTG 1 cut(s) 455
EaeI YGGCCR 3 cut(s) 159, 189, 640
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 285, 637
Eco24I GRGCYC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 173
EcoNI CCTNNNNNAGG 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 736, 775
EcoT14I CCWWGG 2 cut(s) 285, 637
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 2 cut(s) 285, 637
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 3 cut(s) 247, 289, 472
FatI CATG 3 cut(s) 243, 285, 468
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 4 cut(s) 16, 129, 150, 525
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 4 cut(s) 16, 129, 150, 525
FspBI CTAG 1 cut(s) 63
GluI GCNGC 4 cut(s) 16, 129, 150, 525
GsuI CTGGAG 1 cut(s) 733
HaeIII GGCC 3 cut(s) 161, 191, 642
HapII CCGG 1 cut(s) 192
Hin1II CATG 3 cut(s) 247, 289, 472
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 3 cut(s) 203, 490, 569
HpaI GTTAAC 1 cut(s) 270
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 274, 713
Hpy166II GTNNAC 2 cut(s) 270, 763
Hpy188I TCNGA 3 cut(s) 51, 604, 794
Hpy188III TCNNGA 1 cut(s) 573
Hpy8I GTNNAC 2 cut(s) 270, 763
HpyAV CCTTC 3 cut(s) 78, 357, 743
HpyCH4III ACNGT 4 cut(s) 93, 267, 433, 760
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 9 cut(s) 39, 88, 131, 197, 449, 527, 584, 608, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 446, 533
HpyF3I CTNAG 2 cut(s) 292, 727
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 3 cut(s) 247, 289, 472
KspAI GTTAAC 1 cut(s) 270
Kzo9I GATC 4 cut(s) 277, 503, 589, 645
LmnI GCTCC 2 cut(s) 125, 250
Lsp1109I GCAGC 4 cut(s) 2, 115, 161, 511
LweI GCATC 1 cut(s) 595
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 2 cut(s) 163, 239
MalI GATC 4 cut(s) 279, 505, 591, 647
MboI GATC 4 cut(s) 277, 503, 589, 645
MboII GAAGA 4 cut(s) 233, 584, 671, 716
MflI RGATCY 3 cut(s) 503, 589, 645
MhlI GDGCHC 1 cut(s) 175
MlsI TGGCCA 1 cut(s) 642
MluCI AATT 4 cut(s) 417, 528, 561, 615
MluNI TGGCCA 1 cut(s) 642
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 2 cut(s) 196, 541
MnlI CCTC 8 cut(s) 138, 170, 178, 387, 524, 638, 757, 775
Mox20I TGGCCA 1 cut(s) 642
MscI TGGCCA 1 cut(s) 642
MseI TTAA 3 cut(s) 269, 420, 678
Msp20I TGGCCA 1 cut(s) 642
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 738, 777
MvaI CCWGG 2 cut(s) 738, 777
MwoI GCNNNNNNNGC 3 cut(s) 158, 446, 533
NcoI CCATGG 1 cut(s) 285
NdeII GATC 4 cut(s) 277, 503, 589, 645
NlaIII CATG 3 cut(s) 247, 289, 472
NlaIV GGNNCC 2 cut(s) 252, 298
NmuCI GTSAC 2 cut(s) 163, 239
PaeR7I CTCGAG 1 cut(s) 174
PfeI GAWTC 2 cut(s) 203, 569
PkrI GCNGC 4 cut(s) 17, 130, 151, 526
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 736, 775
PspGI CCWGG 2 cut(s) 736, 775
PspN4I GGNNCC 2 cut(s) 252, 298
PspXI VCTCGAGB 1 cut(s) 174
PsuI RGATCY 3 cut(s) 503, 589, 645
RsaI GTAC 1 cut(s) 754
RsaNI GTAC 1 cut(s) 753
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 269, 420, 678
SatI GCNGC 4 cut(s) 16, 129, 150, 525
Sau3AI GATC 4 cut(s) 277, 503, 589, 645
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 2 cut(s) 738, 777
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 1 cut(s) 595
Sfr274I CTCGAG 1 cut(s) 174
SlaI CTCGAG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 4 cut(s) 417, 528, 561, 615
SsiI CCGC 1 cut(s) 248
SspMI CTAG 1 cut(s) 63
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 736, 775
StyI CCWWGG 2 cut(s) 285, 637
TaaI ACNGT 4 cut(s) 93, 267, 433, 760
TaiI ACGT 1 cut(s) 678
TaqI TCGA 1 cut(s) 175
TasI AATT 4 cut(s) 417, 528, 561, 615
TatI WGTACW 1 cut(s) 752
TfiI GAWTC 2 cut(s) 203, 569
Tru1I TTAA 3 cut(s) 269, 420, 678
Tru9I TTAA 3 cut(s) 269, 420, 678
TscAI CASTG 3 cut(s) 159, 204, 346
TseFI GTSAC 2 cut(s) 163, 239
TseI GCWGC 4 cut(s) 15, 128, 149, 524
Tsp45I GTSAC 2 cut(s) 163, 239
TspGWI ACGGA 2 cut(s) 602, 723
TspRI CASTG 3 cut(s) 159, 204, 346
XagI CCTNNNNNAGG 1 cut(s) 518
XhoI CTCGAG 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 762
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.