Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012204

Physical Location & Seq

Genomic Coordinates Forward (+)

33331866 .. 33333817

Gene Structure 1952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1264500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCAGCACTGAGCTGCAAATTTCATCACCCTATGGTCTGCAAGAATTATAGACATGCCAAAGCAAAACCCTCCATCTTTTGCTCAATGCAGCCGTCGCAAAACAACATCAAGGTAATTATAAACGGAGCAGCGAAGGAAATTGGAAGGGCGGCTGTAGTTGCCGTGACCAGAGCTAGAGGAATGGAGGTGGCTGGTGCAGTGGACAATTATCTAGTAGGAGAAGATATTGGAAAGGTGTGTGACATGGAAGAGCCTCTGGAAATACCGATAACAAACGATCTCACGATGGTCTTAGGTTCCATTTCACAGTCTAAAGCATTGGGAGTAGTTGTTGATTTCACTGAGCCTTCGAAAGTCTATGACAATGTTAAACAGGCAACAGCATTTGGCATGAGAAGTGTCGTTTATGTGCCGAAAATTAAATTAGATACAGTATCAGCATTATCTGCGTTATGTGACAAAGCCAGCATGGGTTGTCTTGTTGCGCCGACTCTGTCAATTGGATCAATACTCCTCCAACAAGCTGCAATTTCAGCATCCTTCCACTACAACAATGTAGAAATTGTGGAATCAAGAGCATCTGCAATGGATTTTCCATCATCAGATGCAACCCAAATAGCCAACAATCTGTCTAACCTTGGCCAAATCTACAACAGAGAAGATATTTCAACCGATGTTCGAGCAAGGGGCCAAGTTCTGGGAGACGACGGAGTTCGAGTGCATAGCTTAGTCCTTCCCGGGCTCCCGGCTAGCACAACAGTTCATTTTTCTCGTCTCGGAGAGGTTTACTCTTTGAAACATGACATCACAGATGTGCAATGTCTCATGCCAGGCCTCCTCTTAGCAATCAGAAAGATTGTGCGCATTAAGAACCTGGTGTATGGCTTGGAGAAATTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0019684 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

302

Amino Acids

32.48

Weight (kDa)

8.11

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	37 - 164	1.3e-14	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	171 - 301	2.4e-18	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52100
fragaria_vesca	FvH4_7g29020 FvH4_7g29020
malus_domestica	MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica	Prupe.2G290400_v2.0.a1
pyrus_communis	pycom01g20750 pycom07g24300
rosa_chinensis	RchiOBHm_Chr1g0376731
rosa_laevigata	RLG00000026575
rosa_multiflora	Rmu_sc0003609.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281840
rosa_rugosa	Rorug01G0397900
rosa_samantha	Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana	Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
Acc16I	TGCGCA	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	700
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	2 cut(s)	20, 896
AfiI	CCNNNNNNNGG	1 cut(s)	700
AgsI	TTSAA	2 cut(s)	672, 799
AjnI	CCWGG	2 cut(s)	832, 876
AleI	CACNNNNGTG	1 cut(s)	815
AluBI	AGCT	4 cut(s)	15, 176, 527, 729
AluI	AGCT	4 cut(s)	15, 176, 527, 729
Alw26I	GTCTC	3 cut(s)	699, 782, 830
AlwI	GGATC	1 cut(s)	514
Ama87I	CYCGRG	1 cut(s)	740
AoxI	GGCC	3 cut(s)	643, 691, 835
ApeKI	GCWGC	5 cut(s)	5, 15, 91, 131, 527
ApoI	RAATTY	2 cut(s)	20, 896
AspLEI	GCGC	2 cut(s)	490, 867
AspS9I	GGNCC	1 cut(s)	691
AsuC2I	CCSGG	3 cut(s)	741, 742, 749
AsuHPI	GGTGA	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	353
AsuNHI	GCTAGC	1 cut(s)	752
AvaI	CYCGRG	1 cut(s)	740
BalI	TGGCCA	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	747
BbvI	GCAGC	5 cut(s)	2, 17, 103, 143, 514
BccI	CCATC	3 cut(s)	83, 283, 607
BceAI	ACGGC	2 cut(s)	79, 149
BciT130I	CCWGG	2 cut(s)	834, 878
BcnI	CCSGG	3 cut(s)	741, 742, 749
BcoDI	GTCTC	3 cut(s)	699, 782, 830
BfaI	CTAG	3 cut(s)	177, 215, 753
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	6 cut(s)	6, 16, 92, 132, 153, 528
BlsI	GCNGC	6 cut(s)	7, 17, 93, 133, 154, 529
Bme1390I	CCNGG	5 cut(s)	741, 742, 749, 834, 878
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	691
BmiI	GGNNCC	3 cut(s)	301, 692, 746
BmrFI	CCNGG	5 cut(s)	741, 742, 749, 834, 878
BmsI	GCATC	3 cut(s)	548, 590, 598
BmtI	GCTAGC	1 cut(s)	756
BplI	GAGNNNNNCTC	2 cut(s)	776, 808
Bpu14I	TTCGAA	1 cut(s)	353
BpuMI	CCSGG	3 cut(s)	741, 742, 749
BsaJI	CCNNGG	2 cut(s)	640, 740
BsaXI	ACNNNNNCTCC	4 cut(s)	318, 348, 705, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse3DI	GCAATG	2 cut(s)	594, 827
BseBI	CCWGG	2 cut(s)	834, 878
BseDI	CCNNGG	2 cut(s)	640, 740
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMI	GCAATG	2 cut(s)	594, 827
BseMII	CTCAG	1 cut(s)	336
BseRI	GAGGAG	2 cut(s)	506, 830
BseXI	GCAGC	5 cut(s)	2, 17, 103, 143, 514
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	645, 693, 837
BsiHKCI	CYCGRG	1 cut(s)	740
BsiSI	CCGG	2 cut(s)	741, 749
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	3 cut(s)	699, 782, 830
BsmBI	CGTCTC	2 cut(s)	699, 782
BsnI	GGCC	3 cut(s)	645, 693, 837
BsoBI	CYCGRG	1 cut(s)	740
Bsp119I	TTCGAA	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	2 cut(s)	280, 506
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	3 cut(s)	645, 693, 837
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	301, 692, 746
BspOI	GCTAGC	1 cut(s)	756
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	246
BspT104I	TTCGAA	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	594, 827
BssECI	CCNNGG	2 cut(s)	640, 740
BssMI	GATC	2 cut(s)	280, 506
BssT1I	CCWWGG	1 cut(s)	640
Bst2UI	CCWGG	2 cut(s)	834, 878
Bst4CI	ACNGT	3 cut(s)	312, 436, 763
Bst6I	CTCTTC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	469, 754
BstDEI	CTNAG	5 cut(s)	11, 295, 345, 730, 844
BstF5I	GGATG	1 cut(s)	539
BstHHI	GCGC	2 cut(s)	490, 867
BstKTI	GATC	2 cut(s)	283, 509
BstMAI	GTCTC	3 cut(s)	699, 782, 830
BstMBI	GATC	2 cut(s)	280, 506
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 161, 449, 536
BstNI	CCWGG	2 cut(s)	834, 878
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	5 cut(s)	739, 740, 747, 832, 876
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	5 cut(s)	2, 17, 103, 143, 514
BsuRI	GGCC	3 cut(s)	645, 693, 837
BtsCI	GGATG	1 cut(s)	539
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	3 cut(s)	8, 207, 342
Cac8I	GCNNGC	2 cut(s)	469, 754
CfoI	GCGC	2 cut(s)	490, 867
Cfr13I	GGNCC	1 cut(s)	691
Cfr9I	CCCGGG	1 cut(s)	740
CsiI	ACCWGGT	1 cut(s)	876
CviAII	CATG	6 cut(s)	56, 247, 394, 472, 803, 829
DdeI	CTNAG	5 cut(s)	11, 295, 345, 730, 844
DpnI	GATC	2 cut(s)	282, 508
DpnII	GATC	2 cut(s)	280, 506
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	640
Eco147I	AGGCCT	1 cut(s)	837
Eco24I	GRGCYC	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	740
EcoRII	CCWGG	2 cut(s)	832, 876
EcoT14I	CCWWGG	1 cut(s)	640
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	640
Esp3I	CGTCTC	2 cut(s)	699, 782
FaeI	CATG	6 cut(s)	59, 250, 397, 475, 806, 832
FatI	CATG	6 cut(s)	55, 246, 393, 471, 802, 828
Fnu4HI	GCNGC	6 cut(s)	6, 16, 92, 132, 153, 528
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	6 cut(s)	6, 16, 92, 132, 153, 528
FspAI	RTGCGCAY	1 cut(s)	866
FspBI	CTAG	3 cut(s)	177, 215, 753
FspI	TGCGCA	1 cut(s)	866
GlaI	GCGC	2 cut(s)	489, 866
GluI	GCNGC	6 cut(s)	6, 16, 92, 132, 153, 528
HaeIII	GGCC	3 cut(s)	645, 693, 837
HapII	CCGG	2 cut(s)	741, 749
HhaI	GCGC	2 cut(s)	490, 867
Hin1II	CATG	6 cut(s)	59, 250, 397, 475, 806, 832
Hin6I	GCGC	2 cut(s)	488, 865
HinP1I	GCGC	2 cut(s)	488, 865
HinfI	GANTC	2 cut(s)	493, 572
HpaII	CCGG	2 cut(s)	741, 749
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	205, 790
Hpy188I	TCNGA	3 cut(s)	607, 782, 854
Hpy188III	TCNNGA	3 cut(s)	260, 286, 576
Hpy8I	GTNNAC	2 cut(s)	205, 790
Hpy99I	CGWCG	2 cut(s)	100, 713
HpyAV	CCTTC	5 cut(s)	130, 141, 360, 553, 746
HpyCH4III	ACNGT	3 cut(s)	312, 436, 763
HpyCH4V	TGCA	9 cut(s)	18, 42, 91, 200, 530, 587, 611, 724, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 161, 449, 536
HpyF3I	CTNAG	5 cut(s)	11, 295, 345, 730, 844
Hsp92II	CATG	6 cut(s)	59, 250, 397, 475, 806, 832
HspAI	GCGC	2 cut(s)	488, 865
Kzo9I	GATC	2 cut(s)	280, 506
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	128, 750
Lsp1109I	GCAGC	5 cut(s)	2, 17, 103, 143, 514
LweI	GCATC	3 cut(s)	548, 590, 598
MabI	ACCWGGT	1 cut(s)	876
MaeI	CTAG	3 cut(s)	177, 215, 753
MaeIII	GTNAC	3 cut(s)	166, 242, 458
MalI	GATC	2 cut(s)	282, 508
MboI	GATC	2 cut(s)	280, 506
MboII	GAAGA	3 cut(s)	236, 263, 674
MfeI	CAATTG	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	747
MlsI	TGGCCA	1 cut(s)	645
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	8 cut(s)	82, 173, 181, 267, 527, 778, 848, 851
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	3 cut(s)	372, 423, 870
MslI	CAYNNNNRTG	1 cut(s)	815
Msp20I	TGGCCA	1 cut(s)	645
MspI	CCGG	2 cut(s)	741, 749
MspR9I	CCNGG	5 cut(s)	741, 742, 749, 834, 878
MunI	CAATTG	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	834, 878
MwoI	GCNNNNNNNGC	4 cut(s)	97, 161, 449, 536
NciI	CCSGG	3 cut(s)	741, 742, 749
NdeII	GATC	2 cut(s)	280, 506
NheI	GCTAGC	1 cut(s)	752
NlaIII	CATG	6 cut(s)	59, 250, 397, 475, 806, 832
NlaIV	GGNNCC	3 cut(s)	301, 692, 746
NmuCI	GTSAC	3 cut(s)	166, 242, 458
NsbI	TGCGCA	1 cut(s)	866
NspI	RCATGY	1 cut(s)	59
NspV	TTCGAA	1 cut(s)	353
OliI	CACNNNNGTG	1 cut(s)	815
PceI	AGGCCT	1 cut(s)	837
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	572
PflFI	GACNNNGTC	1 cut(s)	496
PflMI	CCANNNNNTGG	1 cut(s)	700
PkrI	GCNGC	6 cut(s)	7, 17, 93, 133, 154, 529
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PsiI	TTATAA	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	832, 876
PspGI	CCWGG	2 cut(s)	832, 876
PspN4I	GGNNCC	3 cut(s)	301, 692, 746
PspPI	GGNCC	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	815
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	372, 423, 870
SatI	GCNGC	6 cut(s)	6, 16, 92, 132, 153, 528
Sau3AI	GATC	2 cut(s)	280, 506
Sau96I	GGNCC	1 cut(s)	691
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	5 cut(s)	741, 742, 749, 834, 878
SduI	GDGCHC	1 cut(s)	747
SexAI	ACCWGGT	1 cut(s)	876
SfaNI	GCATC	3 cut(s)	548, 590, 598
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	353
SmaI	CCCGGG	1 cut(s)	742
SmiMI	CAYNNNNRTG	1 cut(s)	815
SseBI	AGGCCT	1 cut(s)	837
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	3 cut(s)	177, 215, 753
StuI	AGGCCT	1 cut(s)	837
StyD4I	CCNGG	5 cut(s)	739, 740, 747, 832, 876
StyI	CCWWGG	1 cut(s)	640
TaaI	ACNGT	3 cut(s)	312, 436, 763
TaqI	TCGA	3 cut(s)	353, 682, 718
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	3 cut(s)	372, 423, 870
Tru9I	TTAA	3 cut(s)	372, 423, 870
TscAI	CASTG	3 cut(s)	15, 207, 349
TseFI	GTSAC	3 cut(s)	166, 242, 458
TseI	GCWGC	5 cut(s)	5, 15, 91, 131, 527
Tsp45I	GTSAC	3 cut(s)	166, 242, 458
TspDTI	ATGAA	2 cut(s)	14, 755
TspGWI	ACGGA	2 cut(s)	141, 726
TspMI	CCCGGG	1 cut(s)	740
TspRI	CASTG	3 cut(s)	15, 207, 349
Tth111I	GACNNNGTC	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	700
XapI	RAATTY	2 cut(s)	20, 896
XceI	RCATGY	1 cut(s)	59
XmaI	CCCGGG	1 cut(s)	740
XspI	CTAG	3 cut(s)	177, 215, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.