Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012204

Physical Location & Seq

Genomic Coordinates Forward (+)

29521992 .. 29523628

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1197000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCAGCACTGGCTGCAAATTTCATCACCGTATGGTCTGCAAATATTATAGACATGCCAAGCGAACCTTCCATCTGTTGCTCAATGCAGCCGTCACAAAACAACATCAAGGTGTTTAATAATGTGTGTGACATGGAAGAGCCTTTGGAAATACCGATAACGAATGATCTCACAATGGTCTTAGGTTCCATTTCACAGGCAACAGCATTTGGCATGAGAAGTGTGGTTTATGTGCCGAAAATTAAATTAGATACAGTATCAGCATTATCTGCATTATGTGACAAAGCCAGCATCGGTTGTCTCATTGCACCGACTTTGTCCATTGGATCGATACTTCTCCAACAAGCTGCAATTTCAGCTTCCTTCCACTACAACAATGTAGAAATTGTGGAATCAAGAGCATCTGCAACGGATTTTCCATCATCAGATGCAACCCAAATTGCCAACAACCTGTCTAACCTTGGCCAAATCTACAACAGAGAAGATATTTCAACCGATGTTCTAGTAAGCACAAGTACAAATTGTTGTTTTTTGGTTCAAGTTTTATGCCTTGGATTGGAACTAATTACTATATTTTTATCGTATGTGCAAAAGGCAAGGGGCCAAGTTCTGGGAGATGGAGTTCGAGTGCTTAGCACAACAGTTCATTTTTCTCGTCTCGGAGAGGTTTACTCTCTGAAACATGACATCACAGATGTGCAATGTCTCATGCCAGCCTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0019684 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

242

Amino Acids

25.97

Weight (kDa)

4.63

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52100
fragaria_vesca	FvH4_7g29020 FvH4_7g29020
malus_domestica	MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica	Prupe.2G290400_v2.0.a1
pyrus_communis	pycom01g20750 pycom07g24300
rosa_chinensis	RchiOBHm_Chr1g0376731
rosa_laevigata	RLG00000026575
rosa_multiflora	Rmu_sc0003609.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281840
rosa_rugosa	Rorug01G0397900
rosa_samantha	Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana	Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	610
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	2 cut(s)	556, 610
AgsI	TTSAA	2 cut(s)	492, 539
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AleI	CACNNNNGTG	1 cut(s)	695
AloI	GAACNNNNNNTCC	2 cut(s)	606, 638
AluBI	AGCT	2 cut(s)	347, 359
AluI	AGCT	2 cut(s)	347, 359
Alw26I	GTCTC	3 cut(s)	305, 662, 710
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	2 cut(s)	463, 601
ApeKI	GCWGC	4 cut(s)	5, 14, 88, 347
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	17, 100, 334
BccI	CCATC	3 cut(s)	80, 427, 611
BceAI	ACGGC	1 cut(s)	76
BcoDI	GTCTC	3 cut(s)	305, 662, 710
BfaI	CTAG	1 cut(s)	503
BisI	GCNGC	4 cut(s)	6, 15, 89, 348
BlpI	GCTNAGC	1 cut(s)	632
BlsI	GCNGC	4 cut(s)	7, 16, 90, 349
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	2 cut(s)	187, 602
BmsI	GCATC	3 cut(s)	300, 410, 418
BplI	GAGNNNNNCTC	2 cut(s)	656, 688
Bpu1102I	GCTNAGC	1 cut(s)	632
Bsa29I	ATCGAT	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	460, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	606, 612, 636, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 610
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	303, 707
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	460, 550
BseLI	CCNNNNNNNGG	2 cut(s)	556, 610
BseMI	GCAATG	2 cut(s)	303, 707
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	3 cut(s)	17, 100, 334
BshFI	GGCC	2 cut(s)	465, 603
BshVI	ATCGAT	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	556, 610
BsmAI	GTCTC	3 cut(s)	305, 662, 710
BsmBI	CGTCTC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	465, 603
Bsp143I	GATC	2 cut(s)	166, 326
Bsp1720I	GCTNAGC	1 cut(s)	632
BspANI	GGCC	2 cut(s)	465, 603
BspDI	ATCGAT	1 cut(s)	329
BspLI	GGNNCC	2 cut(s)	187, 602
BspPI	GGATC	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	303, 707
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	460, 550
BssMI	GATC	2 cut(s)	166, 326
BssT1I	CCWWGG	2 cut(s)	460, 550
Bst4CI	ACNGT	3 cut(s)	31, 256, 643
Bst6I	CTCTTC	1 cut(s)	132
BstAPI	GCANNNNNTGC	2 cut(s)	14, 269
BstC8I	GCNNGC	2 cut(s)	289, 714
BstDEI	CTNAG	3 cut(s)	181, 632, 723
BstKTI	GATC	2 cut(s)	169, 329
BstMAI	GTCTC	3 cut(s)	305, 662, 710
BstMBI	GATC	2 cut(s)	166, 326
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 269, 356
BstNSI	RCATGY	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	17, 100, 334
Bsu15I	ATCGAT	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	465, 603
BsuTUI	ATCGAT	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	289, 714
Cfr13I	GGNCC	1 cut(s)	601
ClaI	ATCGAT	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	5 cut(s)	55, 133, 214, 683, 709
CviJI	RGCY	9 cut(s)	14, 91, 142, 287, 347, 359, 465, 603, 716
CviKI_1	RGCY	9 cut(s)	14, 91, 142, 287, 347, 359, 465, 603, 716
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	3 cut(s)	181, 632, 723
DpnI	GATC	2 cut(s)	168, 328
DpnII	GATC	2 cut(s)	166, 326
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	460, 550
EcoT14I	CCWWGG	2 cut(s)	460, 550
ErhI	CCWWGG	2 cut(s)	460, 550
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	5 cut(s)	58, 136, 217, 686, 712
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FatI	CATG	5 cut(s)	54, 132, 213, 682, 708
Fnu4HI	GCNGC	4 cut(s)	6, 15, 89, 348
Fsp4HI	GCNGC	4 cut(s)	6, 15, 89, 348
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	4 cut(s)	6, 15, 89, 348
HaeIII	GGCC	2 cut(s)	465, 603
Hin1II	CATG	5 cut(s)	58, 136, 217, 686, 712
HinfI	GANTC	1 cut(s)	392
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	3 cut(s)	427, 662, 678
Hpy188III	TCNNGA	1 cut(s)	396
Hpy8I	GTNNAC	1 cut(s)	670
HpyAV	CCTTC	2 cut(s)	78, 373
HpyCH4III	ACNGT	3 cut(s)	31, 256, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 269, 356
HpyF3I	CTNAG	3 cut(s)	181, 632, 723
Hsp92II	CATG	5 cut(s)	58, 136, 217, 686, 712
Kzo9I	GATC	2 cut(s)	166, 326
LguI	GCTCTTC	1 cut(s)	132
LpnPI	CCDG	4 cut(s)	182, 301, 464, 596
Lsp1109I	GCAGC	3 cut(s)	17, 100, 334
LweI	GCATC	3 cut(s)	300, 410, 418
MaeI	CTAG	1 cut(s)	503
MaeIII	GTNAC	3 cut(s)	93, 128, 278
MalI	GATC	2 cut(s)	168, 328
MboI	GATC	2 cut(s)	166, 326
MboII	GAAGA	2 cut(s)	149, 494
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	8 cut(s)	19, 240, 245, 351, 384, 438, 520, 564
MluNI	TGGCCA	1 cut(s)	465
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	1 cut(s)	658
Mox20I	TGGCCA	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	2 cut(s)	117, 243
MslI	CAYNNNNRTG	2 cut(s)	110, 695
Msp20I	TGGCCA	1 cut(s)	465
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 269, 356
NdeII	GATC	2 cut(s)	166, 326
NlaIII	CATG	5 cut(s)	58, 136, 217, 686, 712
NlaIV	GGNNCC	2 cut(s)	187, 602
NmuCI	GTSAC	3 cut(s)	93, 128, 278
NspI	RCATGY	1 cut(s)	58
OliI	CACNNNNGTG	1 cut(s)	695
PciSI	GCTCTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	392
PflFI	GACNNNGTC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	4 cut(s)	7, 16, 90, 349
PspN4I	GGNNCC	2 cut(s)	187, 602
PspPI	GGNCC	1 cut(s)	601
PsyI	GACNNNGTC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	2 cut(s)	110, 695
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	117, 243
SatI	GCNGC	4 cut(s)	6, 15, 89, 348
Sau3AI	GATC	2 cut(s)	166, 326
Sau96I	GGNCC	1 cut(s)	601
SetI	ASST	8 cut(s)	70, 114, 187, 349, 361, 453, 462, 669
SfaNI	GCATC	3 cut(s)	300, 410, 418
SmiMI	CAYNNNNRTG	2 cut(s)	110, 695
Sse9I	AATT	8 cut(s)	19, 240, 245, 351, 384, 438, 520, 564
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	503
StyI	CCWWGG	2 cut(s)	460, 550
TaaI	ACNGT	3 cut(s)	31, 256, 643
TaqI	TCGA	2 cut(s)	329, 625
TasI	AATT	8 cut(s)	19, 240, 245, 351, 384, 438, 520, 564
TatI	WGTACW	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	117, 243
Tru9I	TTAA	2 cut(s)	117, 243
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	3 cut(s)	93, 128, 278
TseI	GCWGC	4 cut(s)	5, 14, 88, 347
Tsp45I	GTSAC	3 cut(s)	93, 128, 278
TspDTI	ATGAA	2 cut(s)	13, 635
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	15
Tth111I	GACNNNGTC	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	610
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.