Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012204

Physical Location & Seq

Genomic Coordinates Forward (+)

19087873 .. 19089704

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGCACTGAGCTGCAAATTTCATCACCGTATGGTCTGCAAAAATTATAGACATGCCAAAGCGAAACCTTCCATCTGTTGCTCAATGCAGCCGTCACAAAACAGCATCAAGGTAATTATAAACGGAGCAGCGAAGGAAGTTGGAAGGGCGGCTGTAACTGCAGTGACCAGAGCTAGAGGAATGGAGGTGGCTGGTGCAGTGGACTCTTATCTCGTAGGAGAAGATTTTGGGAAGGATTTTCCATCATCAGATGCAACCCAAATTGCCAACAACCTGTCTAACCTTGGCCAAATCTACAACAGAGAAGATATTTCAACCGATGTTCTAGTAAGCACAAGTACAAATTGTTGTTTATTGGTTCAAGTTTTATTCCTTGGATTGGAACTAATTACTATACTTTTATCGTATGTGCATAAGGTAAGGGGCCAAGTTCTGGGAGATGGAGTTCGAGTGCATAGCTTAGTCCTTCCAGGGCTTCCGGCTAGTACAACAGTTCATTTTTCTCGTCTCGGAGAGGTTTACTCTCTGAAACATGACATCACAGATGTGCAATGTCTCATGCCAGGCCTTCTCTTAGCAATCAGAAAGATTGTGCGCATAAAGAACCTGGTGTATGGCTTGGAGAAATTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0019684 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

213

Amino Acids

23.1

Weight (kDa)

9.11

Isoelectric Point (pI)

16.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52100
fragaria_vesca	FvH4_7g29020 FvH4_7g29020
malus_domestica	MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica	Prupe.2G290400_v2.0.a1
pyrus_communis	pycom01g20750 pycom07g24300
rosa_chinensis	RchiOBHm_Chr1g0376731
rosa_laevigata	RLG00000026575
rosa_multiflora	Rmu_sc0003609.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281840
rosa_rugosa	Rorug01G0397900
rosa_samantha	Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana	Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
Acc16I	TGCGCA	1 cut(s)	599
AccB7I	CCANNNNNTGG	1 cut(s)	436
AciI	CCGC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	20, 629
AfaI	GTAC	2 cut(s)	343, 490
AfiI	CCNNNNNNNGG	2 cut(s)	382, 436
AgsI	TTSAA	2 cut(s)	318, 365
AjnI	CCWGG	3 cut(s)	472, 565, 609
AleI	CACNNNNGTG	1 cut(s)	548
AloI	GAACNNNNNNTCC	2 cut(s)	432, 464
AluBI	AGCT	3 cut(s)	15, 176, 462
AluI	AGCT	3 cut(s)	15, 176, 462
Alw26I	GTCTC	2 cut(s)	515, 563
AoxI	GGCC	3 cut(s)	289, 427, 568
ApeKI	GCWGC	4 cut(s)	5, 15, 91, 131
ApoI	RAATTY	2 cut(s)	20, 629
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	2, 17, 103, 143
BccI	CCATC	3 cut(s)	83, 253, 437
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	3 cut(s)	474, 567, 611
BcoDI	GTCTC	2 cut(s)	515, 563
BfaI	CTAG	3 cut(s)	177, 329, 486
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	5 cut(s)	6, 16, 92, 132, 153
BlsI	GCNGC	5 cut(s)	7, 17, 93, 133, 154
Bme1390I	CCNGG	3 cut(s)	474, 567, 611
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	3 cut(s)	474, 567, 611
BmsI	GCATC	2 cut(s)	117, 244
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BsaJI	CCNNGG	3 cut(s)	286, 376, 473
BsaXI	ACNNNNNCTCC	4 cut(s)	432, 438, 462, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 436
Bse3DI	GCAATG	1 cut(s)	560
BseBI	CCWGG	3 cut(s)	474, 567, 611
BseDI	CCNNGG	3 cut(s)	286, 376, 473
BseLI	CCNNNNNNNGG	2 cut(s)	382, 436
BseMI	GCAATG	1 cut(s)	560
BseXI	GCAGC	4 cut(s)	2, 17, 103, 143
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	291, 429, 570
BsiSI	CCGG	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	382, 436
BsmAI	GTCTC	2 cut(s)	515, 563
BsmBI	CGTCTC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	291, 429, 570
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	3 cut(s)	291, 429, 570
BspLI	GGNNCC	1 cut(s)	428
BspMAI	CTGCAG	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	560
BssECI	CCNNGG	3 cut(s)	286, 376, 473
BssT1I	CCWWGG	2 cut(s)	286, 376
Bst2UI	CCWGG	3 cut(s)	474, 567, 611
Bst4CI	ACNGT	2 cut(s)	32, 496
BstDEI	CTNAG	3 cut(s)	11, 463, 577
BstHHI	GCGC	1 cut(s)	600
BstMAI	GTCTC	2 cut(s)	515, 563
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	3 cut(s)	474, 567, 611
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	472, 565, 609
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	4 cut(s)	2, 17, 103, 143
BsuRI	GGCC	3 cut(s)	291, 429, 570
BtsI	GCAGTG	2 cut(s)	171, 207
BtsIMutI	CAGTG	3 cut(s)	8, 171, 207
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	427
CsiI	ACCWGGT	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	342, 489
CviAII	CATG	3 cut(s)	56, 536, 562
CviQI	GTAC	2 cut(s)	342, 489
DdeI	CTNAG	3 cut(s)	11, 463, 577
EaeI	YGGCCR	1 cut(s)	289
Eco130I	CCWWGG	2 cut(s)	286, 376
Eco147I	AGGCCT	1 cut(s)	570
EcoRII	CCWGG	3 cut(s)	472, 565, 609
EcoT14I	CCWWGG	2 cut(s)	286, 376
ErhI	CCWWGG	2 cut(s)	286, 376
Esp3I	CGTCTC	1 cut(s)	515
FaeI	CATG	3 cut(s)	59, 539, 565
FatI	CATG	3 cut(s)	55, 535, 561
Fnu4HI	GCNGC	5 cut(s)	6, 16, 92, 132, 153
Fsp4HI	GCNGC	5 cut(s)	6, 16, 92, 132, 153
FspAI	RTGCGCAY	1 cut(s)	599
FspBI	CTAG	3 cut(s)	177, 329, 486
FspI	TGCGCA	1 cut(s)	599
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	5 cut(s)	6, 16, 92, 132, 153
HaeIII	GGCC	3 cut(s)	291, 429, 570
HapII	CCGG	1 cut(s)	482
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	3 cut(s)	59, 539, 565
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	205, 523
Hpy188I	TCNGA	4 cut(s)	253, 515, 531, 587
Hpy8I	GTNNAC	2 cut(s)	205, 523
HpyAV	CCTTC	6 cut(s)	81, 130, 141, 229, 479, 581
HpyCH4III	ACNGT	2 cut(s)	32, 496
HpyCH4V	TGCA	9 cut(s)	18, 42, 91, 164, 200, 257, 415, 457, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	11, 463, 577
Hsp92II	CATG	3 cut(s)	59, 539, 565
HspAI	GCGC	1 cut(s)	598
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	4 cut(s)	2, 17, 103, 143
LweI	GCATC	2 cut(s)	117, 244
MabI	ACCWGGT	1 cut(s)	609
MaeI	CTAG	3 cut(s)	177, 329, 486
MaeIII	GTNAC	3 cut(s)	96, 157, 166
MboII	GAAGA	2 cut(s)	236, 320
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	7 cut(s)	20, 46, 117, 264, 346, 390, 629
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	173, 181, 511
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	3 cut(s)	474, 567, 611
MvaI	CCWGG	3 cut(s)	474, 567, 611
MwoI	GCNNNNNNNGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	59, 539, 565
NlaIV	GGNNCC	1 cut(s)	428
NmuCI	GTSAC	2 cut(s)	96, 166
NsbI	TGCGCA	1 cut(s)	599
NspI	RCATGY	1 cut(s)	59
OliI	CACNNNNGTG	1 cut(s)	548
PceI	AGGCCT	1 cut(s)	570
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	5 cut(s)	7, 17, 93, 133, 154
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	122
Psp6I	CCWGG	3 cut(s)	472, 565, 609
PspGI	CCWGG	3 cut(s)	472, 565, 609
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	343, 490
RsaNI	GTAC	2 cut(s)	342, 489
RseI	CAYNNNNRTG	1 cut(s)	548
SatI	GCNGC	5 cut(s)	6, 16, 92, 132, 153
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	474, 567, 611
SexAI	ACCWGGT	1 cut(s)	609
SfaNI	GCATC	2 cut(s)	117, 244
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	548
Sse9I	AATT	7 cut(s)	20, 46, 117, 264, 346, 390, 629
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	3 cut(s)	177, 329, 486
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	3 cut(s)	472, 565, 609
StyI	CCWWGG	2 cut(s)	286, 376
TaaI	ACNGT	2 cut(s)	32, 496
TaqI	TCGA	1 cut(s)	451
TasI	AATT	7 cut(s)	20, 46, 117, 264, 346, 390, 629
TatI	WGTACW	2 cut(s)	341, 488
TauI	GCSGC	1 cut(s)	155
TscAI	CASTG	3 cut(s)	15, 171, 207
TseFI	GTSAC	2 cut(s)	96, 166
TseI	GCWGC	4 cut(s)	5, 15, 91, 131
Tsp45I	GTSAC	2 cut(s)	96, 166
TspDTI	ATGAA	2 cut(s)	14, 488
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	3 cut(s)	15, 171, 207
Van91I	CCANNNNNTGG	1 cut(s)	436
XapI	RAATTY	2 cut(s)	20, 629
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	3 cut(s)	177, 329, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.