MD01G1197100.v1.1

Dihydrodipicolinate reductase, C-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0012204
Physical Location & Seq
Forward (+)
29525796 .. 29527483
1688 bp
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UTR
Exon/CDS
Intron
MD01G1197100.v1.1.491

Sequence Viewer

Length: 792 bp
ATGGCAGCACTGAGCTGCAAATTTCATCACCGTATGGTCTGCAAAAATTATAGACATGCCAAAGCGAAACCTTCCATCTGTTGCTCAATGCAGCCGTCACAAAACAACATCAAGGTAATTATAAACAGAGCAGCGAAGGAAATTGGAAGGGCGGCTGTAACTGTCGTGACCAGAGCTAGAGGAATGGAGGTGGCTGGTTCAGTGGACTCTTATCTCGTAGGAGAAGACATTGGGAAGGTGTGTGACATGGAAGAGCCTTTGGAAATACCGATAACGAATGATCTCACAATGGTCTTAGGTTCCATTTCACAGCCTTCCAAAGTCTACGACAATGTTAAACAGGCAACAGCATTTGGCATGAGAAGTGTGGTTTATGTGCCGAAAATTAAATTAGATACAGTATCAGCATTATCTGCATTATGTGACAAAGCCAGCATCGATTTTCCATCATCAGATGCAACCCAAATTGCCAACAACCTGTCTAACCTTGGCCAAATCTACAACAGAGAAGATATTTCAACCGATGTTCTAGTAAGCACAAGTACAAATTGTTGTTTTTTGGTTCAAGTTTTATGCCTTGGATTGGAACTAATTACTATATTTTTATCGTATGTGCAAAAGGCAAGGGGCCAAGTTCTGGGAGATGGAGTTCGAGTGCTTAGCACAACAGTTCATTTTTCTCGTCTCGGAGAGGTTTACTCTCTGAAACATGACATCACAGATGTGCAATGTCTCATGCCAGGCCTTCTCTTAGCAATCAGAAATATTGTGCGCATAAAGGTAACCAATTAA

Protein Analysis

264

Amino Acids

28.71

Weight (kDa)

8.65

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DapB_C PF05173 144 - 256 6.3e-06 Dihydrodipicolinate reductase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52100
fragaria_vesca FvH4_7g29020 FvH4_7g29020
malus_domestica MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica Prupe.2G290400_v2.0.a1
pyrus_communis pycom01g20750 pycom07g24300
rosa_chinensis RchiOBHm_Chr1g0376731
rosa_laevigata RLG00000026575
rosa_multiflora Rmu_sc0003609.1_g000003
rosa_roxburghii Rroxscaffold_4G00281840
rosa_rugosa Rorug01G0397900
rosa_samantha Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 122
Acc16I TGCGCA 1 cut(s) 773
AccB7I CCANNNNNTGG 1 cut(s) 637
AccI GTMKAC 1 cut(s) 324
AciI CCGC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 1 cut(s) 20
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 2 cut(s) 583, 637
AgsI TTSAA 2 cut(s) 519, 566
AjnI CCWGG 1 cut(s) 739
AleI CACNNNNGTG 1 cut(s) 722
AloI GAACNNNNNNTCC 2 cut(s) 633, 665
AluBI AGCT 2 cut(s) 15, 176
AluI AGCT 2 cut(s) 15, 176
Alw26I GTCTC 2 cut(s) 689, 737
AoxI GGCC 3 cut(s) 490, 628, 742
ApeKI GCWGC 4 cut(s) 5, 15, 91, 131
ApoI RAATTY 1 cut(s) 20
AspLEI GCGC 1 cut(s) 774
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 1 cut(s) 20
BalI TGGCCA 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 2, 17, 103, 143
BccI CCATC 3 cut(s) 83, 454, 638
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 741
BcoDI GTCTC 2 cut(s) 689, 737
BfaI CTAG 2 cut(s) 177, 530
BisI GCNGC 5 cut(s) 6, 16, 92, 132, 153
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 5 cut(s) 7, 17, 93, 133, 154
Bme1390I CCNGG 1 cut(s) 741
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 2 cut(s) 301, 629
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 2 cut(s) 444, 445
BpiI GAAGAC 1 cut(s) 231
BplI GAGNNNNNCTC 2 cut(s) 683, 715
Bpu1102I GCTNAGC 1 cut(s) 659
Bsa29I ATCGAT 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 487, 577
BsaXI ACNNNNNCTCC 4 cut(s) 633, 639, 663, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 583, 637
Bse3DI GCAATG 1 cut(s) 734
BseBI CCWGG 1 cut(s) 741
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 487, 577
BseLI CCNNNNNNNGG 2 cut(s) 583, 637
BseMI GCAATG 1 cut(s) 734
BseXI GCAGC 4 cut(s) 2, 17, 103, 143
BshFI GGCC 3 cut(s) 492, 630, 744
BshVI ATCGAT 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 583, 637
BsmAI GTCTC 2 cut(s) 689, 737
BsmBI CGTCTC 1 cut(s) 689
BsnI GGCC 3 cut(s) 492, 630, 744
Bsp143I GATC 1 cut(s) 280
Bsp1720I GCTNAGC 1 cut(s) 659
BspACI CCGC 1 cut(s) 152
BspANI GGCC 3 cut(s) 492, 630, 744
BspDI ATCGAT 1 cut(s) 438
BspLI GGNNCC 2 cut(s) 301, 629
BspQI GCTCTTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 734
BssECI CCNNGG 2 cut(s) 487, 577
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 2 cut(s) 487, 577
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 4 cut(s) 32, 163, 400, 670
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 4 cut(s) 11, 295, 659, 751
BstEII GGTNACC 1 cut(s) 781
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 2 cut(s) 689, 737
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 781
BstSCI CCNGG 1 cut(s) 739
BstV1I GCAGC 4 cut(s) 2, 17, 103, 143
BstV2I GAAGAC 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 3 cut(s) 492, 630, 744
BsuTUI ATCGAT 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 8, 207
Cac8I GCNNGC 1 cut(s) 433
CfoI GCGC 1 cut(s) 774
Cfr13I GGNCC 1 cut(s) 628
ClaI ATCGAT 1 cut(s) 438
Csp6I GTAC 1 cut(s) 543
CviAII CATG 5 cut(s) 56, 247, 358, 710, 736
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 4 cut(s) 11, 295, 659, 751
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 487, 577
Eco147I AGGCCT 1 cut(s) 744
Eco91I GGTNACC 1 cut(s) 781
EcoO65I GGTNACC 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 739
EcoT14I CCWWGG 2 cut(s) 487, 577
ErhI CCWWGG 2 cut(s) 487, 577
Esp3I CGTCTC 1 cut(s) 689
FaeI CATG 5 cut(s) 59, 250, 361, 713, 739
FatI CATG 5 cut(s) 55, 246, 357, 709, 735
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 5 cut(s) 6, 16, 92, 132, 153
Fsp4HI GCNGC 5 cut(s) 6, 16, 92, 132, 153
FspAI RTGCGCAY 1 cut(s) 773
FspBI CTAG 2 cut(s) 177, 530
FspI TGCGCA 1 cut(s) 773
GlaI GCGC 1 cut(s) 773
GluI GCNGC 5 cut(s) 6, 16, 92, 132, 153
HaeIII GGCC 3 cut(s) 492, 630, 744
HhaI GCGC 1 cut(s) 774
Hin1II CATG 5 cut(s) 59, 250, 361, 713, 739
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HinfI GANTC 1 cut(s) 206
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 3 cut(s) 205, 325, 697
Hpy188I TCNGA 4 cut(s) 454, 689, 705, 761
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 3 cut(s) 205, 325, 697
HpyAV CCTTC 6 cut(s) 81, 130, 141, 229, 324, 755
HpyCH4III ACNGT 4 cut(s) 32, 163, 400, 670
HpyCH4V TGCA 7 cut(s) 18, 42, 91, 416, 458, 616, 727
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 4 cut(s) 11, 295, 659, 751
Hsp92II CATG 5 cut(s) 59, 250, 361, 713, 739
HspAI GCGC 1 cut(s) 772
Kzo9I GATC 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 246
LpnPI CCDG 8 cut(s) 180, 184, 326, 445, 491, 623, 726, 753
Lsp1109I GCAGC 4 cut(s) 2, 17, 103, 143
LweI GCATC 2 cut(s) 444, 445
MaeI CTAG 2 cut(s) 177, 530
MaeIII GTNAC 6 cut(s) 96, 157, 166, 242, 422, 781
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 3 cut(s) 236, 263, 521
MlsI TGGCCA 1 cut(s) 492
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 3 cut(s) 173, 181, 685
Mox20I TGGCCA 1 cut(s) 492
MscI TGGCCA 1 cut(s) 492
MseI TTAA 3 cut(s) 336, 387, 790
MslI CAYNNNNRTG 1 cut(s) 722
Msp20I TGGCCA 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 741
MvaI CCWGG 1 cut(s) 741
MwoI GCNNNNNNNGC 1 cut(s) 413
NdeII GATC 1 cut(s) 280
NlaIII CATG 5 cut(s) 59, 250, 361, 713, 739
NlaIV GGNNCC 2 cut(s) 301, 629
NmuCI GTSAC 4 cut(s) 96, 166, 242, 422
NsbI TGCGCA 1 cut(s) 773
NspI RCATGY 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 722
PceI AGGCCT 1 cut(s) 744
PciSI GCTCTTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 5 cut(s) 7, 17, 93, 133, 154
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PsiI TTATAA 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 739
PspEI GGTNACC 1 cut(s) 781
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 2 cut(s) 301, 629
PspPI GGNCC 1 cut(s) 628
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
RseI CAYNNNNRTG 1 cut(s) 722
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 336, 387, 790
SatI GCNGC 5 cut(s) 6, 16, 92, 132, 153
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 741
SfaNI GCATC 2 cut(s) 444, 445
SmiMI CAYNNNNRTG 1 cut(s) 722
SseBI AGGCCT 1 cut(s) 744
SsiI CCGC 1 cut(s) 152
SspI AATATT 1 cut(s) 766
SspMI CTAG 2 cut(s) 177, 530
StuI AGGCCT 1 cut(s) 744
StyD4I CCNGG 1 cut(s) 739
StyI CCWWGG 2 cut(s) 487, 577
TaaI ACNGT 4 cut(s) 32, 163, 400, 670
TaqI TCGA 2 cut(s) 438, 652
TatI WGTACW 1 cut(s) 542
TauI GCSGC 1 cut(s) 155
Tru1I TTAA 3 cut(s) 336, 387, 790
Tru9I TTAA 3 cut(s) 336, 387, 790
TscAI CASTG 2 cut(s) 15, 207
TseFI GTSAC 4 cut(s) 96, 166, 242, 422
TseI GCWGC 4 cut(s) 5, 15, 91, 131
Tsp45I GTSAC 4 cut(s) 96, 166, 242, 422
TspDTI ATGAA 2 cut(s) 14, 662
TspRI CASTG 2 cut(s) 15, 207
Van91I CCANNNNNTGG 1 cut(s) 637
XapI RAATTY 1 cut(s) 20
XceI RCATGY 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 2 cut(s) 177, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.