Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012204

Physical Location & Seq

Genomic Coordinates Forward (+)

63951597 .. 63953949

Gene Structure 2353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60035

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGTAGCTTTGAGCTGCCAGTTTCAACCTGTGGTCTGCAAGAGTTATCGGAATGGTAGAGCTAGACCTTCTGCTCTTTGCTCAATGCAACCGTCTCAAAACAATATCAAGGTAATAATAAATGGAGCTGCAAAGGAAATAGGGAGGGCAGCAGTGATGGCCGTGACCAGAGCTCGAGGGATGGAGGTGGCCGGTGCAGTGGATTCGTATCTTGTTGGAGAAGATATTGGGAATGTATGTGACATGGCGGAGCCATTGGAGATACCGTTAACGAATGATCTCACCATGGTCTTAGGTTCCATATCGCAGTCTAAAGCAACAGGAGTAGTTGTGGATTTCACTGACCCTTCCAAAGTTTATGACAATGTGAAGCAGGCAACAGCATTTGGAATGAGGAGTGTGGTTTATGTGCCAAAAATTAAGTTAGATACAGTATCAGCATTATCTGCACTCTGTGAGAAAGCCAGCATGGGTTGTCTTGTCGCACCGACTCTTTCTATTGGATCTATACTCCTCCAACAAGCTGCAATTTCAGCTTCCTTTCACTATAACAATGTAGAAATTGTAGAATCAAGAGCTAATGCAACGGATCTTCCATCATCAGATGCAACCCAAATTGCCAACAACCTCTCTAACCTTGGCCAGATCTATAACAGAGAAGACATTTCAACAGATGTTAAGGCAAGGGGTCAAGTTTTGGGTGAAGATGGAGTTCGTGTGCATAGCTTAGTCCTTCCAGGGCTTCCCTCCAGTACAACAGTCTACTTCTCTCGCCCAGGAGAGGTTTACACTCTGAAACATGATATCACAGATGTGCAAAGTCTCATGCCAGGCCTAATCTTAGCTATCAGAAAGATTGTTCGCATCAAGCCTGGTGTATGGCCTGGAGAAACTTTTATGAAACTCCAAGCTTTCTTCAATCTCATTGATGTGTACCTTAACATCATATATGCCCCCCACAGAAGGTTCCTAAATGAAAGCTTAACGGGAGATAGTTTGTTAAAAGAAGCAGCAGAGAGAAAAGAAAGAAGATTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0019684 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

346

Amino Acids

37.54

Weight (kDa)

8.1

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	36 - 163	5.6e-14	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	170 - 294	1.5e-17	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52100
fragaria_vesca	FvH4_7g29020 FvH4_7g29020
malus_domestica	MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica	Prupe.2G290400_v2.0.a1
pyrus_communis	pycom01g20750 pycom07g24300
rosa_chinensis	RchiOBHm_Chr1g0376731
rosa_laevigata	RLG00000026575
rosa_multiflora	Rmu_sc0003609.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281840
rosa_rugosa	Rorug01G0397900
rosa_samantha	Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana	Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	762
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	511, 597
AcoI	YGGCCR	3 cut(s)	159, 189, 640
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	754, 935
AfiI	CCNNNNNNNGG	2 cut(s)	781, 963
AgsI	TTSAA	3 cut(s)	26, 669, 919
AjnI	CCWGG	5 cut(s)	736, 775, 829, 871, 883
AleI	CACNNNNGTG	1 cut(s)	812
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	99, 827
AlwI	GGATC	2 cut(s)	511, 597
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	5 cut(s)	159, 189, 640, 832, 881
ApeKI	GCWGC	5 cut(s)	15, 128, 149, 524, 1010
AsuHPI	GGTGA	2 cut(s)	274, 713
AvaI	CYCGRG	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	5 cut(s)	2, 115, 161, 511, 1022
BccI	CCATC	4 cut(s)	151, 175, 604, 701
BceAI	ACGGC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	5 cut(s)	738, 777, 831, 873, 885
BcoDI	GTCTC	2 cut(s)	99, 827
BfaI	CTAG	1 cut(s)	63
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	5 cut(s)	16, 129, 150, 525, 1011
BlsI	GCNGC	5 cut(s)	17, 130, 151, 526, 1012
Bme1390I	CCNGG	5 cut(s)	738, 777, 831, 873, 885
BmeT110I	CYCGRG	1 cut(s)	174
BmiI	GGNNCC	3 cut(s)	252, 298, 968
BmrFI	CCNGG	5 cut(s)	738, 777, 831, 873, 885
BmsI	GCATC	2 cut(s)	595, 873
BpiI	GAAGAC	1 cut(s)	666
BpmI	CTGGAG	2 cut(s)	733, 906
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	4 cut(s)	285, 637, 737, 775
BsaXI	ACNNNNNCTCC	6 cut(s)	251, 281, 315, 345, 702, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	781, 963
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	19, 750
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	5 cut(s)	738, 777, 831, 873, 885
BseDI	CCNNGG	4 cut(s)	285, 637, 737, 775
BseGI	GGATG	1 cut(s)	186
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	781, 963
BseNI	ACTGG	2 cut(s)	19, 750
BseRI	GAGGAG	2 cut(s)	409, 503
BseXI	GCAGC	5 cut(s)	2, 115, 161, 511, 1022
BsgI	GTGCAG	2 cut(s)	216, 432
BshFI	GGCC	5 cut(s)	161, 191, 642, 834, 883
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	781, 963
BsmAI	GTCTC	2 cut(s)	99, 827
BsmBI	CGTCTC	1 cut(s)	99
BsnI	GGCC	5 cut(s)	161, 191, 642, 834, 883
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	277, 503, 589, 645
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	5 cut(s)	161, 191, 642, 834, 883
BspLI	GGNNCC	3 cut(s)	252, 298, 968
BspPI	GGATC	2 cut(s)	511, 597
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	19, 750
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	4 cut(s)	285, 637, 737, 775
BssMI	GATC	4 cut(s)	277, 503, 589, 645
BssT1I	CCWWGG	2 cut(s)	285, 637
Bst2UI	CCWGG	5 cut(s)	738, 777, 831, 873, 885
Bst4CI	ACNGT	4 cut(s)	93, 267, 433, 760
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	375, 466
BstDEI	CTNAG	3 cut(s)	292, 727, 841
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	4 cut(s)	280, 506, 592, 648
BstMAI	GTCTC	2 cut(s)	99, 827
BstMBI	GATC	4 cut(s)	277, 503, 589, 645
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 446, 533
BstNI	CCWGG	5 cut(s)	738, 777, 831, 873, 885
BstSCI	CCNGG	5 cut(s)	736, 775, 829, 871, 883
BstV1I	GCAGC	5 cut(s)	2, 115, 161, 511, 1022
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	3 cut(s)	503, 589, 645
BstYI	RGATCY	3 cut(s)	503, 589, 645
BsuRI	GGCC	5 cut(s)	161, 191, 642, 834, 883
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	2 cut(s)	159, 204
BtsIMutI	CAGTG	3 cut(s)	159, 204, 339
Cac8I	GCNNGC	2 cut(s)	375, 466
Cfr10I	RCCGGY	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	753, 934
CviAII	CATG	5 cut(s)	244, 286, 469, 800, 826
CviQI	GTAC	2 cut(s)	753, 934
DdeI	CTNAG	3 cut(s)	292, 727, 841
DpnI	GATC	4 cut(s)	279, 505, 591, 647
DpnII	GATC	4 cut(s)	277, 503, 589, 645
DraIII	CACNNNGTG	1 cut(s)	455
EaeI	YGGCCR	3 cut(s)	159, 189, 640
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	285, 637
Eco147I	AGGCCT	1 cut(s)	834
Eco24I	GRGCYC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	805
Eco53kI	GAGCTC	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	173
EcoRII	CCWGG	5 cut(s)	736, 775, 829, 871, 883
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	2 cut(s)	285, 637
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	285, 637
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	5 cut(s)	247, 289, 472, 803, 829
FatI	CATG	5 cut(s)	243, 285, 468, 799, 825
FblI	GTMKAC	1 cut(s)	762
Fnu4HI	GCNGC	5 cut(s)	16, 129, 150, 525, 1011
FokI	GGATG	1 cut(s)	193
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	5 cut(s)	16, 129, 150, 525, 1011
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	5 cut(s)	16, 129, 150, 525, 1011
GsuI	CTGGAG	2 cut(s)	733, 906
HaeIII	GGCC	5 cut(s)	161, 191, 642, 834, 883
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	5 cut(s)	247, 289, 472, 803, 829
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	2 cut(s)	909, 979
HinfI	GANTC	3 cut(s)	203, 490, 569
HpaI	GTTAAC	1 cut(s)	270
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	274, 713
Hpy166II	GTNNAC	4 cut(s)	270, 763, 787, 934
Hpy188I	TCNGA	4 cut(s)	51, 604, 795, 851
Hpy188III	TCNNGA	1 cut(s)	573
Hpy8I	GTNNAC	4 cut(s)	270, 763, 787, 934
HpyAV	CCTTC	4 cut(s)	78, 357, 743, 957
HpyCH4III	ACNGT	4 cut(s)	93, 267, 433, 760
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 446, 533
HpyF3I	CTNAG	3 cut(s)	292, 727, 841
Hsp92II	CATG	5 cut(s)	247, 289, 472, 803, 829
KspAI	GTTAAC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	277, 503, 589, 645
LmnI	GCTCC	2 cut(s)	125, 250
Lsp1109I	GCAGC	5 cut(s)	2, 115, 161, 511, 1022
LweI	GCATC	2 cut(s)	595, 873
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	163, 239
MalI	GATC	4 cut(s)	279, 505, 591, 647
MboI	GATC	4 cut(s)	277, 503, 589, 645
MboII	GAAGA	6 cut(s)	233, 584, 671, 716, 907, 1041
MflI	RGATCY	3 cut(s)	503, 589, 645
MhlI	GDGCHC	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	4 cut(s)	417, 528, 561, 615
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	2 cut(s)	196, 541
MnlI	CCTC	8 cut(s)	138, 170, 178, 387, 524, 638, 757, 775
Mox20I	TGGCCA	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	6 cut(s)	269, 420, 678, 939, 983, 1001
MslI	CAYNNNNRTG	2 cut(s)	812, 929
Msp20I	TGGCCA	1 cut(s)	642
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	5 cut(s)	738, 777, 831, 873, 885
MvaI	CCWGG	5 cut(s)	738, 777, 831, 873, 885
MwoI	GCNNNNNNNGC	3 cut(s)	158, 446, 533
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	4 cut(s)	277, 503, 589, 645
NlaIII	CATG	5 cut(s)	247, 289, 472, 803, 829
NlaIV	GGNNCC	3 cut(s)	252, 298, 968
NmuCI	GTSAC	2 cut(s)	163, 239
OliI	CACNNNNGTG	1 cut(s)	812
PaeR7I	CTCGAG	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	834
PfeI	GAWTC	2 cut(s)	203, 569
PkrI	GCNGC	5 cut(s)	17, 130, 151, 526, 1012
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	5 cut(s)	736, 775, 829, 871, 883
PspGI	CCWGG	5 cut(s)	736, 775, 829, 871, 883
PspN4I	GGNNCC	3 cut(s)	252, 298, 968
PspXI	VCTCGAGB	1 cut(s)	174
PsuI	RGATCY	3 cut(s)	503, 589, 645
RsaI	GTAC	2 cut(s)	754, 935
RsaNI	GTAC	2 cut(s)	753, 934
RseI	CAYNNNNRTG	2 cut(s)	812, 929
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	6 cut(s)	269, 420, 678, 939, 983, 1001
SatI	GCNGC	5 cut(s)	16, 129, 150, 525, 1011
Sau3AI	GATC	4 cut(s)	277, 503, 589, 645
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	5 cut(s)	738, 777, 831, 873, 885
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	595, 873
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	812, 929
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	4 cut(s)	417, 528, 561, 615
SseBI	AGGCCT	1 cut(s)	834
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	175
StuI	AGGCCT	1 cut(s)	834
StyD4I	CCNGG	5 cut(s)	736, 775, 829, 871, 883
StyI	CCWWGG	2 cut(s)	285, 637
TaaI	ACNGT	4 cut(s)	93, 267, 433, 760
TaqI	TCGA	1 cut(s)	175
TasI	AATT	4 cut(s)	417, 528, 561, 615
TatI	WGTACW	1 cut(s)	752
TfiI	GAWTC	2 cut(s)	203, 569
Tru1I	TTAA	6 cut(s)	269, 420, 678, 939, 983, 1001
Tru9I	TTAA	6 cut(s)	269, 420, 678, 939, 983, 1001
TscAI	CASTG	3 cut(s)	159, 204, 346
TseFI	GTSAC	2 cut(s)	163, 239
TseI	GCWGC	5 cut(s)	15, 128, 149, 524, 1010
Tsp45I	GTSAC	2 cut(s)	163, 239
TspDTI	ATGAA	2 cut(s)	914, 990
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	3 cut(s)	159, 204, 346
XhoI	CTCGAG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	762
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.