pycom07g24300

Dihydrodipicolinate reductase, C-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012204
Physical Location & Seq
Forward (+)
25043103 .. 25044843
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g24300.5

Sequence Viewer

Length: 951 bp
ATGGCAGCGCTGAGCTGCAGATTTCATCACCCTATGGTCTGCAAGAATTATCGACATGCCAAAGCAAAACCCTCCATCTTTTGCTCAATGAAGCCGTCGCAAAACAACATCAAGGTAATTATAAACGGAGCAGCGAAGGAAATCGGAAGGGCGGCTGTAGTTGCAGTGACCAGAGCTAGAGGAATGGAGGTGGCTGGTGCAGTGGACAATTATCTAGTAGGAGAAGATATTGGGAAGGTGTGTGACATGGAAGAGCCTCTGGAAATACCGATAACTAACGATCTCACGATGGTCTTAGGTTCCATTTCACAGTCTAAAGCATTGGGAGTAGTTGTTGATTTCACTGAGCCTTCGAAAGTCTATGACAATGTTAAACAGGGTTGTCTTGTTGCGCCAACTCTGTCCATTGGATCGATACTCCTCCAACAAGCTGCAATTTCAGCATCCTTCCACTACAACAATGTAGAAATTGTGGAATCAAGAGCATCTGCAATGGATTTTCCATCATCAGATGCAACCCAAATAGCCAACAACCTGTCTAACCTTGGCCAAATCTACAACAGAGAAGATATTTCAACCGATGTTCGAGTAAGCTCAAGTACAATTTTTAGTCTATCGGTTCTAGTTTTATCCCATGGACTGGAACTCATTACTATATTTTTATCGTACGTGCATAAGGCAAGGGGCCAAGTTCTGGGAGACGACGGAGTTCGAGTGCATAGCTTAGTCCTTCCTGGGCTCCCGGCTAGCACAACAGTCCATTTTTCTCGTCTTGGAGAGGTTTACTCTCTGAAACATGACATCACAGATGTGCAATGTCTCATGCCAGGCCTCCTCTTAGCAATCAGAAAGATTGTGCGCATTAAGGTAACCAATTTATACATTGCTATCGCATCGCATCTCTTAAAAATTTTCATGTACATATCCTGCTTCAACCGGATCACCGATTAA

Protein Analysis

317

Amino Acids

34.39

Weight (kDa)

8.13

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52100
fragaria_vesca FvH4_7g29020 FvH4_7g29020
malus_domestica MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica Prupe.2G290400_v2.0.a1
pyrus_communis pycom01g20750 pycom07g24300
rosa_chinensis RchiOBHm_Chr1g0376731
rosa_laevigata RLG00000026575
rosa_multiflora Rmu_sc0003609.1_g000003
rosa_roxburghii Rroxscaffold_4G00281840
rosa_rugosa Rorug01G0397900
rosa_samantha Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 122
Acc16I TGCGCA 1 cut(s) 860
AccB7I CCANNNNNTGG 2 cut(s) 640, 694
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 418, 947
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 1 cut(s) 909
AfaI GTAC 3 cut(s) 601, 668, 920
AfeI AGCGCT 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 640, 694
AgsI TTSAA 2 cut(s) 576, 934
AjnI CCWGG 2 cut(s) 733, 826
AleI CACNNNNGTG 1 cut(s) 809
AluBI AGCT 5 cut(s) 15, 176, 431, 594, 723
AluI AGCT 5 cut(s) 15, 176, 431, 594, 723
Alw26I GTCTC 2 cut(s) 693, 824
AlwI GGATC 2 cut(s) 418, 947
Aor51HI AGCGCT 1 cut(s) 9
AoxI GGCC 3 cut(s) 547, 685, 829
ApeKI GCWGC 4 cut(s) 5, 15, 131, 431
ApoI RAATTY 1 cut(s) 909
AspLEI GCGC 3 cut(s) 10, 394, 861
AspS9I GGNCC 1 cut(s) 685
AsuC2I CCSGG 1 cut(s) 743
AsuHPI GGTGA 2 cut(s) 20, 934
AsuII TTCGAA 1 cut(s) 353
AsuNHI GCTAGC 1 cut(s) 746
BalI TGGCCA 1 cut(s) 549
BanII GRGCYC 1 cut(s) 741
BbvI GCAGC 4 cut(s) 2, 17, 143, 418
BccI CCATC 3 cut(s) 83, 283, 511
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 735, 828
BcnI CCSGG 1 cut(s) 743
BcoDI GTCTC 2 cut(s) 693, 824
BfaI CTAG 4 cut(s) 177, 215, 623, 747
BfmI CTRYAG 2 cut(s) 16, 156
BfoI RGCGCY 1 cut(s) 11
BisI GCNGC 5 cut(s) 6, 16, 132, 153, 432
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 5 cut(s) 7, 17, 133, 154, 433
Bme1390I CCNGG 3 cut(s) 735, 743, 828
BmgT120I GGNCC 1 cut(s) 685
BmiI GGNNCC 3 cut(s) 301, 686, 740
BmrFI CCNGG 3 cut(s) 735, 743, 828
BmsI GCATC 5 cut(s) 452, 494, 502, 902, 907
BmtI GCTAGC 1 cut(s) 750
BplI GAGNNNNNCTC 2 cut(s) 770, 802
Bpu1102I GCTNAGC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 580
BpuMI CCSGG 1 cut(s) 743
Bsa29I ATCGAT 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 670
BsaJI CCNNGG 3 cut(s) 544, 634, 734
BsaWI WCCGGW 1 cut(s) 936
BsaXI ACNNNNNCTCC 4 cut(s) 318, 348, 699, 729
Bsc4I CCNNNNNNNGG 2 cut(s) 640, 694
Bse1I ACTGG 1 cut(s) 645
Bse3DI GCAATG 3 cut(s) 498, 821, 882
BseBI CCWGG 2 cut(s) 735, 828
BseCI ATCGAT 1 cut(s) 413
BseDI CCNNGG 3 cut(s) 544, 634, 734
BseGI GGATG 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 640, 694
BseMI GCAATG 3 cut(s) 498, 821, 882
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 645
BseRI GAGGAG 2 cut(s) 410, 824
BseXI GCAGC 4 cut(s) 2, 17, 143, 418
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 3 cut(s) 549, 687, 831
BshVI ATCGAT 1 cut(s) 413
BsiSI CCGG 2 cut(s) 743, 937
BsiWI CGTACG 1 cut(s) 666
BslI CCNNNNNNNGG 2 cut(s) 640, 694
BsmAI GTCTC 2 cut(s) 693, 824
BsmBI CGTCTC 1 cut(s) 693
BsnI GGCC 3 cut(s) 549, 687, 831
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 741
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 3 cut(s) 280, 410, 939
Bsp1720I GCTNAGC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 634
BspACI CCGC 1 cut(s) 152
BspANI GGCC 3 cut(s) 549, 687, 831
BspCNI CTCAG 1 cut(s) 337
BspDI ATCGAT 1 cut(s) 413
BspLI GGNNCC 3 cut(s) 301, 686, 740
BspMAI CTGCAG 1 cut(s) 20
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 2 cut(s) 418, 947
BspQI GCTCTTC 1 cut(s) 246
BspT104I TTCGAA 1 cut(s) 353
BsrDI GCAATG 3 cut(s) 498, 821, 882
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 1 cut(s) 645
BssECI CCNNGG 3 cut(s) 544, 634, 734
BssMI GATC 3 cut(s) 280, 410, 939
BssT1I CCWWGG 2 cut(s) 544, 634
Bst2UI CCWGG 2 cut(s) 735, 828
Bst4CI ACNGT 2 cut(s) 312, 757
Bst6I CTCTTC 1 cut(s) 246
BstAUI TGTACA 1 cut(s) 918
BstBAI YACGTR 1 cut(s) 670
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 748
BstDEI CTNAG 5 cut(s) 11, 295, 345, 724, 838
BstDSI CCRYGG 1 cut(s) 634
BstEII GGTNACC 1 cut(s) 868
BstF5I GGATG 1 cut(s) 443
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 3 cut(s) 10, 394, 861
BstKTI GATC 3 cut(s) 283, 413, 942
BstMAI GTCTC 2 cut(s) 693, 824
BstMBI GATC 3 cut(s) 280, 410, 939
BstMWI GCNNNNNNNGC 2 cut(s) 161, 440
BstNI CCWGG 2 cut(s) 735, 828
BstNSI RCATGY 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 868
BstSCI CCNGG 3 cut(s) 733, 741, 826
BstSFI CTRYAG 2 cut(s) 16, 156
BstV1I GCAGC 4 cut(s) 2, 17, 143, 418
Bsu15I ATCGAT 1 cut(s) 413
BsuRI GGCC 3 cut(s) 549, 687, 831
BsuTUI ATCGAT 1 cut(s) 413
BtgI CCRYGG 1 cut(s) 634
BtgZI GCGATG 1 cut(s) 879
BtsCI GGATG 1 cut(s) 443
BtsI GCAGTG 2 cut(s) 171, 207
BtsIMutI CAGTG 3 cut(s) 171, 207, 342
Cac8I GCNNGC 1 cut(s) 748
CfoI GCGC 3 cut(s) 10, 394, 861
Cfr13I GGNCC 1 cut(s) 685
ClaI ATCGAT 1 cut(s) 413
Csp6I GTAC 3 cut(s) 600, 667, 919
CviAII CATG 6 cut(s) 56, 247, 635, 797, 823, 916
CviQI GTAC 3 cut(s) 600, 667, 919
DdeI CTNAG 5 cut(s) 11, 295, 345, 724, 838
DpnI GATC 3 cut(s) 282, 412, 941
DpnII GATC 3 cut(s) 280, 410, 939
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 544, 634
Eco147I AGGCCT 1 cut(s) 831
Eco24I GRGCYC 1 cut(s) 741
Eco47III AGCGCT 1 cut(s) 9
Eco91I GGTNACC 1 cut(s) 868
EcoO65I GGTNACC 1 cut(s) 868
EcoRII CCWGG 2 cut(s) 733, 826
EcoT14I CCWWGG 2 cut(s) 544, 634
EcoT38I GRGCYC 1 cut(s) 741
ErhI CCWWGG 2 cut(s) 544, 634
Esp3I CGTCTC 1 cut(s) 693
FaeI CATG 6 cut(s) 59, 250, 638, 800, 826, 919
FatI CATG 6 cut(s) 55, 246, 634, 796, 822, 915
Fnu4HI GCNGC 5 cut(s) 6, 16, 132, 153, 432
FokI GGATG 1 cut(s) 430
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 5 cut(s) 6, 16, 132, 153, 432
FspAI RTGCGCAY 1 cut(s) 860
FspBI CTAG 4 cut(s) 177, 215, 623, 747
FspI TGCGCA 1 cut(s) 860
GlaI GCGC 3 cut(s) 9, 393, 860
GluI GCNGC 5 cut(s) 6, 16, 132, 153, 432
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 3 cut(s) 549, 687, 831
HapII CCGG 2 cut(s) 743, 937
HhaI GCGC 3 cut(s) 10, 394, 861
Hin1II CATG 6 cut(s) 59, 250, 638, 800, 826, 919
Hin6I GCGC 3 cut(s) 8, 392, 859
HinP1I GCGC 3 cut(s) 8, 392, 859
HinfI GANTC 1 cut(s) 476
HpaII CCGG 2 cut(s) 743, 937
HphI GGTGA 2 cut(s) 20, 934
Hpy166II GTNNAC 2 cut(s) 205, 784
Hpy188I TCNGA 4 cut(s) 146, 511, 792, 848
Hpy188III TCNNGA 3 cut(s) 260, 286, 480
Hpy8I GTNNAC 2 cut(s) 205, 784
Hpy99I CGWCG 2 cut(s) 100, 707
HpyAV CCTTC 6 cut(s) 130, 141, 229, 360, 457, 740
HpyCH4III ACNGT 2 cut(s) 312, 757
HpyCH4IV ACGT 1 cut(s) 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 440
HpyF3I CTNAG 5 cut(s) 11, 295, 345, 724, 838
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 6 cut(s) 59, 250, 638, 800, 826, 919
HspAI GCGC 3 cut(s) 8, 392, 859
Kzo9I GATC 3 cut(s) 280, 410, 939
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 128, 744
Lsp1109I GCAGC 4 cut(s) 2, 17, 143, 418
LweI GCATC 5 cut(s) 452, 494, 502, 902, 907
MaeI CTAG 4 cut(s) 177, 215, 623, 747
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 3 cut(s) 166, 242, 868
MalI GATC 3 cut(s) 282, 412, 941
MboI GATC 3 cut(s) 280, 410, 939
MboII GAAGA 3 cut(s) 236, 263, 578
MhlI GDGCHC 1 cut(s) 741
MlsI TGGCCA 1 cut(s) 549
MluCI AATT 8 cut(s) 46, 117, 208, 435, 468, 603, 874, 909
MluNI TGGCCA 1 cut(s) 549
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 8 cut(s) 82, 173, 181, 267, 431, 772, 842, 845
Mox20I TGGCCA 1 cut(s) 549
MscI TGGCCA 1 cut(s) 549
MseI TTAA 4 cut(s) 372, 864, 905, 949
MslI CAYNNNNRTG 1 cut(s) 809
Msp20I TGGCCA 1 cut(s) 549
MspI CCGG 2 cut(s) 743, 937
MspR9I CCNGG 3 cut(s) 735, 743, 828
MvaI CCWGG 2 cut(s) 735, 828
MwoI GCNNNNNNNGC 2 cut(s) 161, 440
NciI CCSGG 1 cut(s) 743
NcoI CCATGG 1 cut(s) 634
NdeII GATC 3 cut(s) 280, 410, 939
NheI GCTAGC 1 cut(s) 746
NlaIII CATG 6 cut(s) 59, 250, 638, 800, 826, 919
NlaIV GGNNCC 3 cut(s) 301, 686, 740
NmuCI GTSAC 2 cut(s) 166, 242
NsbI TGCGCA 1 cut(s) 860
NspI RCATGY 1 cut(s) 59
NspV TTCGAA 1 cut(s) 353
OliI CACNNNNGTG 1 cut(s) 809
PceI AGGCCT 1 cut(s) 831
PciSI GCTCTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 476
Pfl23II CGTACG 1 cut(s) 666
PflMI CCANNNNNTGG 2 cut(s) 640, 694
PkrI GCNGC 5 cut(s) 7, 17, 133, 154, 433
Ppu21I YACGTR 1 cut(s) 670
PsiI TTATAA 1 cut(s) 122
Psp6I CCWGG 2 cut(s) 733, 826
PspEI GGTNACC 1 cut(s) 868
PspGI CCWGG 2 cut(s) 733, 826
PspLI CGTACG 1 cut(s) 666
PspN4I GGNNCC 3 cut(s) 301, 686, 740
PspPI GGNCC 1 cut(s) 685
PstI CTGCAG 1 cut(s) 20
RsaI GTAC 3 cut(s) 601, 668, 920
RsaNI GTAC 3 cut(s) 600, 667, 919
RseI CAYNNNNRTG 1 cut(s) 809
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 4 cut(s) 372, 864, 905, 949
SatI GCNGC 5 cut(s) 6, 16, 132, 153, 432
Sau3AI GATC 3 cut(s) 280, 410, 939
Sau96I GGNCC 1 cut(s) 685
ScrFI CCNGG 3 cut(s) 735, 743, 828
SduI GDGCHC 1 cut(s) 741
SfaNI GCATC 5 cut(s) 452, 494, 502, 902, 907
SfcI CTRYAG 2 cut(s) 16, 156
SfuI TTCGAA 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 8 cut(s) 46, 117, 208, 435, 468, 603, 874, 909
SseBI AGGCCT 1 cut(s) 831
SsiI CCGC 1 cut(s) 152
SspMI CTAG 4 cut(s) 177, 215, 623, 747
StuI AGGCCT 1 cut(s) 831
StyD4I CCNGG 3 cut(s) 733, 741, 826
StyI CCWWGG 2 cut(s) 544, 634
TaaI ACNGT 2 cut(s) 312, 757
TaiI ACGT 1 cut(s) 672
TaqI TCGA 5 cut(s) 52, 353, 413, 586, 712
TasI AATT 8 cut(s) 46, 117, 208, 435, 468, 603, 874, 909
TatI WGTACW 2 cut(s) 599, 918
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 4 cut(s) 372, 864, 905, 949
Tru9I TTAA 4 cut(s) 372, 864, 905, 949
TscAI CASTG 3 cut(s) 171, 207, 349
TseFI GTSAC 2 cut(s) 166, 242
TseI GCWGC 4 cut(s) 5, 15, 131, 431
Tsp45I GTSAC 2 cut(s) 166, 242
TspDTI ATGAA 3 cut(s) 14, 104, 904
TspGWI ACGGA 2 cut(s) 141, 720
TspRI CASTG 3 cut(s) 171, 207, 349
Van91I CCANNNNNTGG 2 cut(s) 640, 694
XapI RAATTY 1 cut(s) 909
XceI RCATGY 1 cut(s) 59
XspI CTAG 4 cut(s) 177, 215, 623, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.