Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011656

Physical Location & Seq

Genomic Coordinates Reverse (-)

21520446 .. 21522517

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTCGTTGTGATCAACATTTTTGTGTTCCTTGTGGCCATGTATATGAATGACTGCCCCAACCACAGTTCTGGGATCCAAGGCAAGTGCGTAGCTAGGGTTCTTGGCAAGTTCTCGTTTCAACCCTTGAAGGAGAACCCTCTCTTGGGCCCTTCTTCTTCCACATTGGAGAAGTTGGGAGCCTTGGAGGGGTTCAAAGTGGTGCATAAGCATCAGGGATGGAGACTTGTTACTTGTATTTGGTTACATGCTGGAGTAGTACATCTAGTAGTTAATATGCTCAGCTTGGTCTTCATCGGAATTCGAATAGAGCAGCAATTTGGGTCTGTGCGAGTTGGGATTATATACATGTTATCTGGATTTGGGGGTAGCATCATGTCATCTCTTTTTATTCAAAAGAACATTTCTGTTGGTGCCTCGGGTGCTCTTTTTGGTCTTCTTGGATCAATGCTCTCGGAACTAATTACGAATTGGACTATTTATACCAACAAGGTTGCAGCTCTTGTTACTCTTCTGGTCATCACTGTCATTAACCTTGGCATTGGAATTTTGCCACGCGTTGATAATTTTGCGGACATTGGTGGATTTATCACCGGATTCCTCATCAGATTTGTGTTCATGCCCCGTCCTCAATTCGGATGGCTGGAGCAGCTGAATCTTCCTGCTGGTGCTAATGCCAATGTCAAGTCCAAATTCAAGGCCTACCAATATGTGTTATGGCTTCTTTCAGTCACTCTGTTGATTGTTGGGTTTACAGTTGCATTGGTGATGCTGTTCCACGGCAAGAATGGAAATGAGCATTGCCATTGGTGTCACTACCTCAGTTGTATTCCCACATCTAGATGGCATTGTGAAGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

288

Amino Acids

31.78

Weight (kDa)

9.23

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	71 - 208	8.7e-43	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07250 AT5G07250
fragaria_vesca	FvH4_7g29110 FvH4_7g29110
malus_domestica	MD01G1198000.v1.1 MD07G1265600.v1.1
prunus_persica	Prupe.2G291300_v2.0.a1
pyrus_communis	pycom01g20810 pycom07g24380
rosa_chinensis	RchiOBHm_Chr1g0376861
rosa_laevigata	RLG00000026564
rosa_multiflora	Rmu_sc0002113.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281670
rosa_rugosa	Rorug01G0399100
rosa_samantha	Rh1AG416300 Rh1BG375600 Rh1CG389400 Rh1DG406200
rosa_wichuraiana	Rw1G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	413
AccII	CGCG	1 cut(s)	558
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	3 cut(s)	70, 83, 451
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	300, 546, 692
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	4 cut(s)	145, 146, 189, 635
AflIII	ACRYGT	2 cut(s)	348, 556
AgsI	TTSAA	5 cut(s)	122, 130, 196, 395, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	4 cut(s)	95, 285, 500, 652
AluI	AGCT	4 cut(s)	95, 285, 500, 652
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	70, 83, 451
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	3 cut(s)	36, 148, 699
ApaI	GGGCCC	1 cut(s)	152
ApeKI	GCWGC	3 cut(s)	313, 497, 649
ApoI	RAATTY	3 cut(s)	300, 546, 692
AspS9I	GGNCC	2 cut(s)	148, 149
AsuHPI	GGTGA	2 cut(s)	583, 778
AsuII	TTCGAA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	152
BbsI	GAAGAC	2 cut(s)	283, 428
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	325, 509, 661
BccI	CCATC	3 cut(s)	213, 633, 837
BceAI	ACGGC	1 cut(s)	796
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	3 cut(s)	96, 266, 840
BisI	GCNGC	3 cut(s)	314, 498, 650
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	3 cut(s)	315, 499, 651
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	148, 149
BmiI	GGNNCC	4 cut(s)	77, 150, 181, 415
BmsI	GCATC	3 cut(s)	220, 381, 759
BpiI	GAAGAC	2 cut(s)	283, 428
BpmI	CTGGAG	2 cut(s)	273, 665
Bpu1102I	GCTNAGC	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	304
BsaJI	CCNNGG	5 cut(s)	79, 183, 417, 535, 778
BsaWI	WCCGGW	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 146, 189, 635
Bse3DI	GCAATG	1 cut(s)	799
BseDI	CCNNGG	5 cut(s)	79, 183, 417, 535, 778
BseGI	GGATG	2 cut(s)	224, 644
BseLI	CCNNNNNNNGG	4 cut(s)	145, 146, 189, 635
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	2 cut(s)	295, 835
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	325, 509, 661
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	38, 150, 701
BshNI	GGYRCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	427
BsiHKCI	CYCGRG	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	594
BslI	CCNNNNNNNGG	4 cut(s)	145, 146, 189, 635
BsmAI	GTCTC	1 cut(s)	217
BsnI	GGCC	3 cut(s)	38, 150, 701
BsoBI	CYCGRG	1 cut(s)	418
Bsp119I	TTCGAA	1 cut(s)	304
Bsp120I	GGGCCC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	152, 427
Bsp143I	GATC	3 cut(s)	12, 75, 443
Bsp1720I	GCTNAGC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	3 cut(s)	38, 150, 701
BspCNI	CTCAG	2 cut(s)	294, 834
BspFNI	CGCG	1 cut(s)	558
BspLI	GGNNCC	4 cut(s)	77, 150, 181, 415
BspPI	GGATC	3 cut(s)	70, 83, 451
BspT104I	TTCGAA	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	799
BssECI	CCNNGG	5 cut(s)	79, 183, 417, 535, 778
BssMI	GATC	3 cut(s)	12, 75, 443
BssT1I	CCWWGG	3 cut(s)	79, 183, 535
Bst4CI	ACNGT	3 cut(s)	68, 526, 757
Bst6I	CTCTTC	1 cut(s)	516
BstBI	TTCGAA	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	281, 821
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	2 cut(s)	224, 644
BstFNI	CGCG	1 cut(s)	558
BstKTI	GATC	3 cut(s)	15, 78, 446
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	3 cut(s)	12, 75, 443
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 649
BstNSI	RCATGY	2 cut(s)	251, 352
BstSLI	GKGCMC	1 cut(s)	152
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	3 cut(s)	325, 509, 661
BstV2I	GAAGAC	2 cut(s)	283, 428
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	38, 150, 701
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	2 cut(s)	224, 644
BtsIMutI	CAGTG	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	148, 149
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	5 cut(s)	40, 248, 349, 376, 619
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	281, 821
DpnI	GATC	3 cut(s)	14, 77, 445
DpnII	GATC	3 cut(s)	12, 75, 443
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco130I	CCWWGG	3 cut(s)	79, 183, 535
Eco147I	AGGCCT	1 cut(s)	701
Eco24I	GRGCYC	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	300
EcoT14I	CCWWGG	3 cut(s)	79, 183, 535
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	3 cut(s)	79, 183, 535
FaeI	CATG	5 cut(s)	43, 251, 352, 379, 622
FatI	CATG	5 cut(s)	39, 247, 348, 375, 618
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	314, 498, 650
FokI	GGATG	2 cut(s)	231, 651
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	314, 498, 650
FspBI	CTAG	3 cut(s)	96, 266, 840
GluI	GCNGC	3 cut(s)	314, 498, 650
GsuI	CTGGAG	2 cut(s)	273, 665
HaeIII	GGCC	3 cut(s)	38, 150, 701
HapII	CCGG	1 cut(s)	594
Hin1II	CATG	5 cut(s)	43, 251, 352, 379, 622
HinfI	GANTC	2 cut(s)	597, 655
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	2 cut(s)	583, 778
Hpy166II	GTNNAC	1 cut(s)	753
Hpy188I	TCNGA	4 cut(s)	299, 457, 608, 638
Hpy188III	TCNNGA	2 cut(s)	357, 840
Hpy8I	GTNNAC	1 cut(s)	753
HpyAV	CCTTC	2 cut(s)	124, 162
HpyCH4III	ACNGT	3 cut(s)	68, 526, 757
HpyCH4V	TGCA	3 cut(s)	205, 497, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 649
HpyF3I	CTNAG	2 cut(s)	281, 821
Hsp92II	CATG	5 cut(s)	43, 251, 352, 379, 622
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 75, 443
LmnI	GCTCC	2 cut(s)	179, 646
LpnPI	CCDG	9 cut(s)	57, 200, 237, 342, 500, 607, 629, 651, 675
Lsp1109I	GCAGC	3 cut(s)	325, 509, 661
LweI	GCATC	3 cut(s)	220, 381, 759
MaeI	CTAG	3 cut(s)	96, 266, 840
MaeIII	GTNAC	5 cut(s)	229, 243, 505, 730, 812
MalI	GATC	3 cut(s)	14, 77, 445
MboI	GATC	3 cut(s)	12, 75, 443
MboII	GAAGA	6 cut(s)	147, 150, 283, 428, 503, 650
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	152, 427
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	8 cut(s)	300, 317, 462, 469, 546, 565, 632, 692
MluI	ACGCGT	1 cut(s)	556
MluNI	TGGCCA	1 cut(s)	38
MnlI	CCTC	6 cut(s)	150, 181, 427, 611, 639, 830
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	273, 531
MslI	CAYNNNNRTG	3 cut(s)	23, 44, 841
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	652
MspI	CCGG	1 cut(s)	594
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	2 cut(s)	422, 649
NdeII	GATC	3 cut(s)	12, 75, 443
NlaIII	CATG	5 cut(s)	43, 251, 352, 379, 622
NlaIV	GGNNCC	4 cut(s)	77, 150, 181, 415
NmuCI	GTSAC	2 cut(s)	730, 812
NspI	RCATGY	2 cut(s)	251, 352
NspV	TTCGAA	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	701
PciI	ACATGT	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	597, 655
PkrI	GCNGC	3 cut(s)	315, 499, 651
PscI	ACATGT	1 cut(s)	348
PspN4I	GGNNCC	4 cut(s)	77, 150, 181, 415
PspOMI	GGGCCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	148, 149
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PsuI	RGATCY	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	652
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	3 cut(s)	23, 44, 841
SaqAI	TTAA	2 cut(s)	273, 531
SatI	GCNGC	3 cut(s)	314, 498, 650
Sau3AI	GATC	3 cut(s)	12, 75, 443
Sau96I	GGNCC	2 cut(s)	148, 149
SduI	GDGCHC	2 cut(s)	152, 427
SetI	ASST	7 cut(s)	97, 287, 495, 502, 537, 654, 822
SfaNI	GCATC	3 cut(s)	220, 381, 759
SfuI	TTCGAA	1 cut(s)	304
SmiMI	CAYNNNNRTG	3 cut(s)	23, 44, 841
Sse9I	AATT	8 cut(s)	300, 317, 462, 469, 546, 565, 632, 692
SseBI	AGGCCT	1 cut(s)	701
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	3 cut(s)	96, 266, 840
StuI	AGGCCT	1 cut(s)	701
StyI	CCWWGG	3 cut(s)	79, 183, 535
TaaI	ACNGT	3 cut(s)	68, 526, 757
TaqI	TCGA	1 cut(s)	304
TasI	AATT	8 cut(s)	300, 317, 462, 469, 546, 565, 632, 692
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	597, 655
Tru1I	TTAA	2 cut(s)	273, 531
Tru9I	TTAA	2 cut(s)	273, 531
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	730, 812
TseI	GCWGC	3 cut(s)	313, 497, 649
Tsp45I	GTSAC	2 cut(s)	730, 812
TspDTI	ATGAA	3 cut(s)	62, 283, 607
TspRI	CASTG	1 cut(s)	529
XapI	RAATTY	3 cut(s)	300, 546, 692
XbaI	TCTAGA	1 cut(s)	839
XceI	RCATGY	2 cut(s)	251, 352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XspI	CTAG	3 cut(s)	96, 266, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.