Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011656

Physical Location & Seq

Genomic Coordinates Reverse (-)

65854003 .. 65855707

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG389400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCTGGTGAAGCTGAAGACTTGGAAAACAACAGAGGAGGAGTGAAGCACAGAGCAAACGGAGAGAGCTACTCATCGTCTACGTATGTTGCAGATGACGCAGAGACCCAATGGACTTCTTGGTTGGTGCCCATGTTGGTTGTGATTAACCTTTTTGTGTTCCTTGTGGCCATGTTTATGAATGACTGCCCCAACCACAGTTCTGGGATCAAAGGCAAGTGTGTGGCTAGGGTTCTTGGCAGGTTCTCGTTTCAACCGTTGAAGGAGAACCCCCTCTTAGGCCCTTCTTCTTCCACATTGGAAAAGTTGGGAGCTTTGGAGTGGAGCAAAGTGGTGCATAAGCATCAGGGATGGAGACTTGTTACTTGTATTTGGTTACATGCTGGAGTAGTACATCTGGTTGTTAACATGCTCAGCTTGGTCTTCATCGGAATTCGTATAGAGCTGCAATTTGGGCTTGTGCGAGTTGGGATTATATACTTGTTGTCTGGATTTGGGGGTAGCATCATGTCGTCTCTTTTTATTCGAAAGAACATTTCTGTTGGTGCATCGGGTGCTCTTTTTGGTCTTCTTGGATCAATGCTTTCGGAACTAATTACGAATTGGACTATTTATACCAACAAGGTCAAGAAAATTGTGATGTTTGGTTTATATTCTTTGAGTACAATTTCATGTATGCTGATTTACTCTTTCTTTGCTCACATGATCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

237

Amino Acids

26.2

Weight (kDa)

9.08

Isoelectric Point (pI)

22.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	115 - 235	1.5e-31	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07250 AT5G07250
fragaria_vesca	FvH4_7g29110 FvH4_7g29110
malus_domestica	MD01G1198000.v1.1 MD07G1265600.v1.1
prunus_persica	Prupe.2G291300_v2.0.a1
pyrus_communis	pycom01g20810 pycom07g24380
rosa_chinensis	RchiOBHm_Chr1g0376861
rosa_laevigata	RLG00000026564
rosa_multiflora	Rmu_sc0002113.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281670
rosa_rugosa	Rorug01G0399100
rosa_samantha	Rh1AG416300 Rh1BG375600 Rh1CG389400 Rh1DG406200
rosa_wichuraiana	Rw1G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	80
AclWI	GGATC	2 cut(s)	215, 583
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	393, 664
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	254, 262
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	5 cut(s)	14, 69, 314, 417, 445
AluI	AGCT	5 cut(s)	14, 69, 314, 417, 445
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	3 cut(s)	98, 349, 519
AlwI	GGATC	2 cut(s)	215, 583
AoxI	GGCC	2 cut(s)	168, 280
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	127
BbsI	GAAGAC	3 cut(s)	24, 415, 560
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	1 cut(s)	705
BcoDI	GTCTC	3 cut(s)	98, 349, 519
BfaI	CTAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	446
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	3 cut(s)	352, 513, 557
BpiI	GAAGAC	3 cut(s)	24, 415, 560
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	405
Bpu1102I	GCTNAGC	1 cut(s)	413
Bpu14I	TTCGAA	1 cut(s)	526
BsaAI	YACGTR	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	427
BseRI	GAGGAG	2 cut(s)	51, 54
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	432
BshFI	GGCC	2 cut(s)	170, 282
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	559
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	3 cut(s)	98, 349, 519
BsmBI	CGTCTC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	170, 282
Bso31I	GGTCTC	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	526
Bsp1286I	GDGCHC	2 cut(s)	132, 559
Bsp143I	GATC	3 cut(s)	207, 575, 705
Bsp1720I	GCTNAGC	1 cut(s)	413
BspANI	GGCC	2 cut(s)	170, 282
BspCNI	CTCAG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	215, 583
BspT104I	TTCGAA	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	98
BssMI	GATC	3 cut(s)	207, 575, 705
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	200, 258
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	277, 413
BstF5I	GGATG	1 cut(s)	356
BstKTI	GATC	3 cut(s)	210, 578, 708
BstMAI	GTCTC	3 cut(s)	98, 349, 519
BstMBI	GATC	3 cut(s)	207, 575, 705
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 454, 554
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	2 cut(s)	383, 412
BstSCI	CCNGG	1 cut(s)	4
BstSLI	GKGCMC	1 cut(s)	132
BstSNI	TACGTA	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	3 cut(s)	24, 415, 560
BstXI	CCANNNNNNTGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	170, 282
BtsCI	GGATG	1 cut(s)	356
BveI	ACCTGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	392, 663
CviAII	CATG	7 cut(s)	133, 172, 380, 409, 508, 672, 703
CviJI	RGCY	9 cut(s)	14, 69, 170, 227, 282, 314, 417, 445, 457
CviKI_1	RGCY	9 cut(s)	14, 69, 170, 227, 282, 314, 417, 445, 457
CviQI	GTAC	2 cut(s)	392, 663
DdeI	CTNAG	2 cut(s)	277, 413
DpnI	GATC	3 cut(s)	209, 577, 707
DpnII	GATC	3 cut(s)	207, 575, 705
EaeI	YGGCCR	1 cut(s)	168
Eco105I	TACGTA	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	4
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	7 cut(s)	136, 175, 383, 412, 511, 675, 706
FatI	CATG	7 cut(s)	132, 171, 379, 408, 507, 671, 702
FbaI	TGATCA	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	446
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	446
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	170, 282
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	7 cut(s)	136, 175, 383, 412, 511, 675, 706
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HpaI	GTTAAC	1 cut(s)	406
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	81, 406
Hpy188I	TCNGA	2 cut(s)	431, 589
Hpy188III	TCNNGA	2 cut(s)	489, 628
Hpy8I	GTNNAC	2 cut(s)	81, 406
HpyAV	CCTTC	2 cut(s)	256, 294
HpyCH4III	ACNGT	2 cut(s)	200, 258
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	92, 337, 448, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 454, 554
HpyF3I	CTNAG	2 cut(s)	277, 413
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	7 cut(s)	136, 175, 383, 412, 511, 675, 706
Ksp22I	TGATCA	1 cut(s)	705
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	207, 575, 705
LmnI	GCTCC	2 cut(s)	311, 324
LpnPI	CCDG	7 cut(s)	18, 189, 226, 332, 369, 383, 474
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	3 cut(s)	352, 513, 557
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	361, 375
MalI	GATC	3 cut(s)	209, 577, 707
MboI	GATC	3 cut(s)	207, 575, 705
MboII	GAAGA	5 cut(s)	29, 279, 282, 415, 560
MhlI	GDGCHC	2 cut(s)	132, 559
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	6 cut(s)	432, 449, 594, 601, 633, 666
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	3 cut(s)	29, 32, 284
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	2 cut(s)	147, 405
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	98, 454, 554
NdeII	GATC	3 cut(s)	207, 575, 705
NlaIII	CATG	7 cut(s)	136, 175, 383, 412, 511, 675, 706
NlaIV	GGNNCC	1 cut(s)	129
NspI	RCATGY	2 cut(s)	383, 412
NspV	TTCGAA	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	281
RsaI	GTAC	2 cut(s)	393, 664
RsaNI	GTAC	2 cut(s)	392, 663
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	147, 405
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	3 cut(s)	207, 575, 705
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	132, 559
SetI	ASST	9 cut(s)	16, 71, 86, 153, 245, 316, 419, 447, 627
SfaNI	GCATC	3 cut(s)	352, 513, 557
SfuI	TTCGAA	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	176
SnaBI	TACGTA	1 cut(s)	84
Sse9I	AATT	6 cut(s)	432, 449, 594, 601, 633, 666
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	2 cut(s)	200, 258
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	526
TasI	AATT	6 cut(s)	432, 449, 594, 601, 633, 666
TatI	WGTACW	2 cut(s)	391, 662
Tru1I	TTAA	2 cut(s)	147, 405
Tru9I	TTAA	2 cut(s)	147, 405
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	3 cut(s)	194, 415, 660
TspGWI	ACGGA	1 cut(s)	75
XapI	RAATTY	1 cut(s)	432
XceI	RCATGY	2 cut(s)	383, 412
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.