Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002113.1

Orthogroup ID

OG0011656

Physical Location & Seq

Genomic Coordinates Forward (+)

20292 .. 20591

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002113.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgcctggtgaagctgaagacttggaaaacaacagaggaggagtgaagcacagagcaaacggagagagctactcatcgtctacgtatattgcagatgacgtagagacccaatggacttcttggttggtgcccatgttagttgtgattaacctttttgtattccttgtggccatgtttatgaatgactgccccaaccacagttctgggatcataggcaagtgtgtggctggggttcttggcaggttctcgtttcaaccgttgaaggagaaccccctcttaggcccttcttcttccacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

99

Amino Acids

10.78

Weight (kDa)

4.89

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07250 AT5G07250
fragaria_vesca	FvH4_7g29110 FvH4_7g29110
malus_domestica	MD01G1198000.v1.1 MD07G1265600.v1.1
prunus_persica	Prupe.2G291300_v2.0.a1
pyrus_communis	pycom01g20810 pycom07g24380
rosa_chinensis	RchiOBHm_Chr1g0376861
rosa_laevigata	RLG00000026564
rosa_multiflora	Rmu_sc0002113.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281670
rosa_rugosa	Rorug01G0399100
rosa_samantha	Rh1AG416300 Rh1BG375600 Rh1CG389400 Rh1DG406200
rosa_wichuraiana	Rw1G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	254, 262
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	2 cut(s)	14, 69
AluI	AGCT	2 cut(s)	14, 69
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	168, 280
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BsaAI	YACGTR	2 cut(s)	84, 297
BsaI	GGTCTC	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseRI	GAGGAG	2 cut(s)	51, 54
BseSI	GKGCMC	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	227
BshFI	GGCC	2 cut(s)	170, 282
BshNI	GGYRCC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	170, 282
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	170, 282
BspLI	GGNNCC	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	98
BssMI	GATC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	200, 258
BstBAI	YACGTR	2 cut(s)	84, 297
BstDEI	CTNAG	1 cut(s)	277
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstSLI	GKGCMC	1 cut(s)	132
BstSNI	TACGTA	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	170, 282
BveI	ACCTGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	281
CviAII	CATG	2 cut(s)	133, 172
CviJI	RGCY	5 cut(s)	14, 69, 170, 227, 282
CviKI_1	RGCY	5 cut(s)	14, 69, 170, 227, 282
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	168
Eco105I	TACGTA	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	2 cut(s)	136, 175
FaiI	YATR	5 cut(s)	87, 134, 173, 179, 212
FatI	CATG	2 cut(s)	132, 171
FblI	GTMKAC	1 cut(s)	80
GsaI	CCCAGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	170, 282
Hin1II	CATG	2 cut(s)	136, 175
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	2 cut(s)	256, 294
HpyCH4III	ACNGT	2 cut(s)	200, 258
HpyCH4IV	ACGT	3 cut(s)	83, 99, 296
HpyCH4V	TGCA	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	277
HpySE526I	ACGT	3 cut(s)	83, 99, 296
Hsp92II	CATG	2 cut(s)	136, 175
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	4 cut(s)	18, 189, 213, 226
MaeII	ACGT	3 cut(s)	83, 99, 296
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	3 cut(s)	29, 279, 282
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	3 cut(s)	29, 32, 284
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	136, 175
NlaIV	GGNNCC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
Ppu21I	YACGTR	2 cut(s)	84, 297
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	7 cut(s)	16, 71, 86, 102, 153, 245, 299
SmiMI	CAYNNNNRTG	1 cut(s)	176
SnaBI	TACGTA	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	2 cut(s)	200, 258
TaiI	ACGT	3 cut(s)	86, 102, 299
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.