Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011656

Physical Location & Seq

Genomic Coordinates Reverse (-)

28486169 .. 28489074

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G291300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCTGGTGAAGTTGAAGATGTGGAAAACAGAGGAGTGAAAGACAGAGCAAGGCCGAGCTACTCGTCTTCTTCTTATGTGATAGAGGACTCAGAGACCCAATGGACTTCTTGGTTGGTACCCATGGTTGTTGTGGCTAACGTTGGTGTGTTCCTTGTGGTCATGTTTGTGAACAATTGTCCAAAGCACAATTCTCGGATTGAGGGCAAGTGTGAGGCAAGGTTTCTTGGGAGGTTCTCGTTTCAACCTTTGAAGGAGAACCCTCTCTTCGGCCCTTCTTCTTCCACATTAGAGAAGATGGGAGCTTTAGATTGGGACAAAGTTGAGCATAAGCATCAGGGATGGAGGCTTTTCACTTGTATTTGGTTGCATGCTGGCGTAATCCACCTGGTTGCTAACATGCTGAGCCTGGTGTTCATTGGAATTCGTATAGAACAGCAATTTGGTTTTGTGCGAGTTGGAATTATATACTTGTTGTCTGGATTTGGAGGGAGCATACTTTCGTCCCTTTTCATTCGAAAGAACATCTCTGTTGGTGCCTCTGGTGCTCTTTTTGGGCTTCTTGGAGCAATGCTTTCAGAACTAATTACCAATTGGACTATTTATACCAACAAGGTTGCAGCCCTCCTCACCCTTTTGGTCATTATTGCAATTAACCTTGGCATTGGAATTTTGCCACATGTTGATAATTTTGCCCACATTGGTGGGTTTCTTACTGGTTTCCTCATCGGCTTTGTCTTGATGCCCCGTCCTCGGTTTGGGTGGTTGGAGCAACCAAATCTTCCTGCTCGTGTCAATGTCAAGTCCAAATACAAGGCTTACCAATATATGCTATGGCTTCTTTCTCTTGTTCTGCTGATTGTTGGGTTTACAGCTGCATTGGTGATGCTCTTCCACGGGGAGAATGGGAATGACCATTGTCATTGGTGTCACTACCTCAGCTGTGTCCCTTCATCTAGATGGCATTGTGAAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

327

Amino Acids

36.52

Weight (kDa)

8.45

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07250 AT5G07250
fragaria_vesca	FvH4_7g29110 FvH4_7g29110
malus_domestica	MD01G1198000.v1.1 MD07G1265600.v1.1
prunus_persica	Prupe.2G291300_v2.0.a1
pyrus_communis	pycom01g20810 pycom07g24380
rosa_chinensis	RchiOBHm_Chr1g0376861
rosa_laevigata	RLG00000026564
rosa_multiflora	Rmu_sc0002113.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281670
rosa_rugosa	Rorug01G0399100
rosa_samantha	Rh1AG416300 Rh1BG375600 Rh1CG389400 Rh1DG406200
rosa_wichuraiana	Rw1G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	118
AccB1I	GGYRCC	2 cut(s)	118, 536
AclI	AACGTT	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	423, 669
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	269, 753, 758
AflIII	ACRYGT	1 cut(s)	679
AgsI	TTSAA	3 cut(s)	17, 245, 253
AjnI	CCWGG	2 cut(s)	387, 408
AjuI	GAANNNNNNNTTGG	4 cut(s)	175, 207, 426, 458
AleI	CACNNNNGTG	1 cut(s)	702
AluBI	AGCT	4 cut(s)	60, 305, 875, 942
AluI	AGCT	4 cut(s)	60, 305, 875, 942
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	53, 271
ApeKI	GCWGC	2 cut(s)	620, 875
ApoI	RAATTY	2 cut(s)	423, 669
Asp718I	GGTACC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	20, 622, 895
AsuII	TTCGAA	1 cut(s)	517
BanI	GGYRCC	2 cut(s)	118, 536
BauI	CACGAG	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	550
BbvCI	CCTCAGC	1 cut(s)	938
BbvI	GCAGC	2 cut(s)	632, 862
BccI	CCATC	3 cut(s)	292, 336, 954
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	2 cut(s)	389, 410
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	957
BisI	GCNGC	2 cut(s)	621, 876
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	2 cut(s)	622, 877
Bme1390I	CCNGG	2 cut(s)	389, 410
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	2 cut(s)	120, 538
BmrFI	CCNGG	2 cut(s)	389, 410
BmsI	GCATC	3 cut(s)	343, 732, 876
BoxI	GACNNNNGTC	1 cut(s)	918
BpiI	GAAGAC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	938
Bpu1102I	GCTNAGC	1 cut(s)	404
Bpu14I	TTCGAA	1 cut(s)	517
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	4 cut(s)	123, 658, 752, 895
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 753, 758
Bse1I	ACTGG	1 cut(s)	721
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	389, 410
BseDI	CCNNGG	4 cut(s)	123, 658, 752, 895
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	3 cut(s)	269, 753, 758
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	3 cut(s)	105, 395, 952
BseNI	ACTGG	1 cut(s)	721
BseRI	GAGGAG	2 cut(s)	48, 617
BseXI	GCAGC	2 cut(s)	632, 862
BshFI	GGCC	2 cut(s)	55, 273
BshNI	GGYRCC	2 cut(s)	118, 536
BsiHKAI	GWGCWC	1 cut(s)	550
BslFI	GGGAC	3 cut(s)	329, 490, 932
BslI	CCNNNNNNNGG	3 cut(s)	269, 753, 758
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	3 cut(s)	329, 490, 932
BsnI	GGCC	2 cut(s)	55, 273
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp1720I	GCTNAGC	1 cut(s)	404
Bsp19I	CCATGG	1 cut(s)	123
BspANI	GGCC	2 cut(s)	55, 273
BspCNI	CTCAG	3 cut(s)	104, 396, 951
BspLI	GGNNCC	2 cut(s)	120, 538
BspQI	GCTCTTC	1 cut(s)	896
BspT104I	TTCGAA	1 cut(s)	517
BspT107I	GGYRCC	2 cut(s)	118, 536
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	721
BssECI	CCNNGG	4 cut(s)	123, 658, 752, 895
BssSI	CACGAG	1 cut(s)	789
BssT1I	CCWWGG	2 cut(s)	123, 658
Bst2BI	CACGAG	1 cut(s)	789
Bst2UI	CCWGG	2 cut(s)	389, 410
Bst6I	CTCTTC	2 cut(s)	272, 896
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	372, 376
BstDEI	CTNAG	3 cut(s)	91, 404, 938
BstDSI	CCRYGG	2 cut(s)	123, 895
BstF5I	GGATG	1 cut(s)	347
BstMAI	GTCTC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	2 cut(s)	389, 410
BstNSI	RCATGY	3 cut(s)	374, 403, 683
BstPAI	GACNNNNGTC	1 cut(s)	918
BstSCI	CCNGG	2 cut(s)	387, 408
BstV1I	GCAGC	2 cut(s)	632, 862
BstV2I	GAAGAC	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	55, 273
BtgI	CCRYGG	2 cut(s)	123, 895
BtsCI	GGATG	1 cut(s)	347
Cac8I	GCNNGC	2 cut(s)	372, 376
Cfr13I	GGNCC	1 cut(s)	272
CsiI	ACCWGGT	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	5 cut(s)	124, 163, 371, 400, 680
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	3 cut(s)	91, 404, 938
Eam1104I	CTCTTC	2 cut(s)	272, 896
EarI	CTCTTC	2 cut(s)	272, 896
Eco130I	CCWWGG	2 cut(s)	123, 658
Eco31I	GGTCTC	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	423
EcoRII	CCWGG	2 cut(s)	387, 408
EcoT14I	CCWWGG	2 cut(s)	123, 658
ErhI	CCWWGG	2 cut(s)	123, 658
FaeI	CATG	5 cut(s)	127, 166, 374, 403, 683
FaqI	GGGAC	3 cut(s)	329, 490, 932
FatI	CATG	5 cut(s)	123, 162, 370, 399, 679
Fnu4HI	GCNGC	2 cut(s)	621, 876
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	621, 876
FspBI	CTAG	1 cut(s)	957
GluI	GCNGC	2 cut(s)	621, 876
HaeIII	GGCC	2 cut(s)	55, 273
Hin1II	CATG	5 cut(s)	127, 166, 374, 403, 683
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	3 cut(s)	20, 622, 895
Hpy166II	GTNNAC	2 cut(s)	172, 870
Hpy188I	TCNGA	3 cut(s)	94, 198, 580
Hpy188III	TCNNGA	3 cut(s)	480, 739, 957
Hpy8I	GTNNAC	2 cut(s)	172, 870
HpyAV	CCTTC	3 cut(s)	247, 285, 960
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	370, 620, 650, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	3 cut(s)	91, 404, 938
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	5 cut(s)	127, 166, 374, 403, 683
KpnI	GGTACC	1 cut(s)	122
LguI	GCTCTTC	1 cut(s)	896
LmnI	GCTCC	4 cut(s)	302, 492, 566, 769
Lsp1109I	GCAGC	2 cut(s)	632, 862
LweI	GCATC	3 cut(s)	343, 732, 876
MabI	ACCWGGT	1 cut(s)	387
MaeI	CTAG	1 cut(s)	957
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	929
MboII	GAAGA	9 cut(s)	29, 60, 63, 259, 270, 273, 307, 773, 883
MfeI	CAATTG	2 cut(s)	175, 592
MhlI	GDGCHC	1 cut(s)	550
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	439, 747
MseI	TTAA	2 cut(s)	654, 979
MslI	CAYNNNNRTG	3 cut(s)	167, 702, 958
MspA1I	CMGCKG	2 cut(s)	875, 942
MspR9I	CCNGG	2 cut(s)	389, 410
MunI	CAATTG	2 cut(s)	175, 592
MvaI	CCWGG	2 cut(s)	389, 410
MwoI	GCNNNNNNNGC	1 cut(s)	545
NcoI	CCATGG	1 cut(s)	123
NlaIII	CATG	5 cut(s)	127, 166, 374, 403, 683
NlaIV	GGNNCC	2 cut(s)	120, 538
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	929
NspI	RCATGY	3 cut(s)	374, 403, 683
NspV	TTCGAA	1 cut(s)	517
OliI	CACNNNNGTG	1 cut(s)	702
PaeI	GCATGC	1 cut(s)	374
PciI	ACATGT	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	896
PkrI	GCNGC	2 cut(s)	622, 877
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PscI	ACATGT	1 cut(s)	679
PshAI	GACNNNNGTC	1 cut(s)	918
Psp1406I	AACGTT	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	387, 408
PspGI	CCWGG	2 cut(s)	387, 408
PspN4I	GGNNCC	2 cut(s)	120, 538
PspPI	GGNCC	1 cut(s)	272
PvuII	CAGCTG	2 cut(s)	875, 942
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	3 cut(s)	167, 702, 958
SapI	GCTCTTC	1 cut(s)	896
SaqAI	TTAA	2 cut(s)	654, 979
SatI	GCNGC	2 cut(s)	621, 876
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	389, 410
SduI	GDGCHC	1 cut(s)	550
SexAI	ACCWGGT	1 cut(s)	387
SfaNI	GCATC	3 cut(s)	343, 732, 876
SfuI	TTCGAA	1 cut(s)	517
SmiMI	CAYNNNNRTG	3 cut(s)	167, 702, 958
SphI	GCATGC	1 cut(s)	374
SspMI	CTAG	1 cut(s)	957
StyD4I	CCNGG	2 cut(s)	387, 408
StyI	CCWWGG	2 cut(s)	123, 658
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	654, 979
Tru9I	TTAA	2 cut(s)	654, 979
TseFI	GTSAC	1 cut(s)	929
TseI	GCWGC	2 cut(s)	620, 875
Tsp45I	GTSAC	1 cut(s)	929
TspDTI	ATGAA	3 cut(s)	406, 502, 942
XapI	RAATTY	2 cut(s)	423, 669
XbaI	TCTAGA	1 cut(s)	956
XceI	RCATGY	3 cut(s)	374, 403, 683
XcmI	CCANNNNNNNNNTGG	2 cut(s)	130, 902
XspI	CTAG	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.