Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011656

Physical Location & Seq

Genomic Coordinates Forward (+)

3879370 .. 3882719

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGGGACATATTAATTTTCTTGTCTGGATATCTAGTACTGATCTTCTTTCACCTTTACTTTTATTGGCTGCTTCACCTTCTATTCCTTTGATACCTCCTTTCGTTTCCACAAAGCTTAAAGACAGCAAGCACCCACAAACACAAAAATGCCTGGTGAAGCTGATCGAAGACTTGGAAAACAACAGACGAGGAGTGAAGCACAGAGCAAACGGAGAGATCTACTCATCGTCTACGTATGTTGCAGATGACGCAGATACCCAATGGACTTCTTGGTTGATGTCCATGTTGGTTGTGATTAACATTTTTGTGTTCCTTGTGGCCATGTTTATGAATGACTGCCCCAACCACAGTTCTGGGATCAAAGGCAAGTGTGTGGCTAGGGTTCTTGGCAGGTTCTCGTTTCGACCGTTGAAGGAGAACCCACTCTTAGGCCCTTCTTCTTCCACGAAGAGTTTGAGGGAGGACGGGCACGGCGTGCTGTGGCGAGGACTAGGAACTGCGGTTTCTAGAGCATTTCTTGTGAATGGTGCTATCTTTGCTACTTATGAGCTAGCTGCAACATTGGTGCTTAAGATGTCGATGGATCTAGAAAATTTAGTTGGCGAGTTGGTCTTTGAGGTCTTGGTTGGGTTTTCTATTTCTTCTTTGGAGTGTTCTTTTTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

223

Amino Acids

24.6

Weight (kDa)

6.96

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07250 AT5G07250
fragaria_vesca	FvH4_7g29110 FvH4_7g29110
malus_domestica	MD01G1198000.v1.1 MD07G1265600.v1.1
prunus_persica	Prupe.2G291300_v2.0.a1
pyrus_communis	pycom01g20810 pycom07g24380
rosa_chinensis	RchiOBHm_Chr1g0376861
rosa_laevigata	RLG00000026564
rosa_multiflora	Rmu_sc0002113.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281670
rosa_rugosa	Rorug01G0399100
rosa_samantha	Rh1AG416300 Rh1BG375600 Rh1CG389400 Rh1DG406200
rosa_wichuraiana	Rw1G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	233
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	2 cut(s)	368, 594
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	595
AdeI	CACNNNGTG	1 cut(s)	478
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	4 cut(s)	118, 163, 553, 557
AluI	AGCT	4 cut(s)	118, 163, 553, 557
AlwI	GGATC	2 cut(s)	368, 594
AoxI	GGCC	2 cut(s)	321, 433
ApeKI	GCWGC	2 cut(s)	71, 557
ApoI	RAATTY	1 cut(s)	595
AseI	ATTAAT	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	45, 69, 169
AsuNHI	GCTAGC	1 cut(s)	553
BaeGI	GKGCMC	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	58, 544
BccI	CCATC	1 cut(s)	577
BceAI	ACGGC	1 cut(s)	490
BciT130I	CCWGG	1 cut(s)	155
BfaI	CTAG	6 cut(s)	36, 381, 494, 510, 554, 590
BfrI	CTTAAG	1 cut(s)	572
BfuAI	ACCTGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	2 cut(s)	72, 558
BlsI	GCNGC	2 cut(s)	73, 559
BmcAI	AGTACT	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	155
BmtI	GCTAGC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BsaAI	YACGTR	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	2 cut(s)	58, 544
Bsh1285I	CGRYCG	1 cut(s)	410
BshFI	GGCC	2 cut(s)	323, 435
BsiEI	CGRYCG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	323, 435
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	5 cut(s)	43, 165, 219, 360, 586
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	2 cut(s)	323, 435
BspMI	ACCTGC	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	557
BspPI	GGATC	2 cut(s)	368, 594
BspTI	CTTAAG	1 cut(s)	572
BssMI	GATC	5 cut(s)	43, 165, 219, 360, 586
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	353, 411
Bst6I	CTCTTC	1 cut(s)	446
BstAFI	CTTAAG	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	478
BstBAI	YACGTR	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	131, 479, 555
BstDEI	CTNAG	1 cut(s)	430
BstKTI	GATC	5 cut(s)	46, 168, 222, 363, 589
BstMBI	GATC	5 cut(s)	43, 165, 219, 360, 586
BstMCI	CGRYCG	1 cut(s)	410
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 478, 539
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	474
BstSNI	TACGTA	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	58, 544
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	2 cut(s)	219, 586
BstXI	CCANNNNNNTGG	1 cut(s)	356
BstYI	RGATCY	2 cut(s)	219, 586
BsuRI	GGCC	2 cut(s)	323, 435
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	3 cut(s)	131, 479, 555
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	2 cut(s)	286, 325
CviJI	RGCY	8 cut(s)	71, 118, 163, 323, 380, 435, 553, 557
CviKI_1	RGCY	8 cut(s)	71, 118, 163, 323, 380, 435, 553, 557
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	5 cut(s)	45, 167, 221, 362, 588
DpnII	GATC	5 cut(s)	43, 165, 219, 360, 586
DraIII	CACNNNGTG	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco105I	TACGTA	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	33
FaeI	CATG	2 cut(s)	289, 328
FaiI	YATR	6 cut(s)	12, 240, 287, 326, 332, 549
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	285, 324
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	2 cut(s)	72, 558
Fsp4HI	GCNGC	2 cut(s)	72, 558
FspBI	CTAG	6 cut(s)	36, 381, 494, 510, 554, 590
GluI	GCNGC	2 cut(s)	72, 558
HaeIII	GGCC	2 cut(s)	323, 435
HgaI	GACGC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	289, 328
HindIII	AAGCTT	1 cut(s)	116
HphI	GGTGA	3 cut(s)	45, 69, 169
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188III	TCNNGA	3 cut(s)	28, 510, 590
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	3 cut(s)	90, 409, 447
HpyCH4III	ACNGT	2 cut(s)	353, 411
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	245, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 478, 539
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	289, 328
Kzo9I	GATC	5 cut(s)	43, 165, 219, 360, 586
LpnPI	CCDG	5 cut(s)	13, 140, 167, 342, 379
Lsp1109I	GCAGC	2 cut(s)	58, 544
MaeI	CTAG	6 cut(s)	36, 381, 494, 510, 554, 590
MaeII	ACGT	1 cut(s)	236
MalI	GATC	5 cut(s)	45, 167, 221, 362, 588
MboI	GATC	5 cut(s)	43, 165, 219, 360, 586
MboII	GAAGA	6 cut(s)	38, 182, 432, 435, 463, 636
MflI	RGATCY	2 cut(s)	219, 586
MhlI	GDGCHC	1 cut(s)	474
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	2 cut(s)	16, 595
MluNI	TGGCCA	1 cut(s)	323
MnlI	CCTC	6 cut(s)	108, 185, 453, 457, 482, 613
Mox20I	TGGCCA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	4 cut(s)	15, 120, 300, 573
MslI	CAYNNNNRTG	3 cut(s)	148, 308, 329
Msp20I	TGGCCA	1 cut(s)	323
MspCI	CTTAAG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	251, 478, 539
NdeII	GATC	5 cut(s)	43, 165, 219, 360, 586
NheI	GCTAGC	1 cut(s)	553
NlaIII	CATG	2 cut(s)	289, 328
PcsI	WCGNNNNNNNCGW	2 cut(s)	407, 474
PkrI	GCNGC	2 cut(s)	73, 559
Ppu21I	YACGTR	1 cut(s)	237
PshBI	ATTAAT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	219, 586
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	3 cut(s)	148, 308, 329
SaqAI	TTAA	4 cut(s)	15, 120, 300, 573
SatI	GCNGC	2 cut(s)	72, 558
Sau3AI	GATC	5 cut(s)	43, 165, 219, 360, 586
Sau96I	GGNCC	1 cut(s)	434
ScaI	AGTACT	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	474
SmiMI	CAYNNNNRTG	3 cut(s)	148, 308, 329
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SnaBI	TACGTA	1 cut(s)	237
Sse9I	AATT	2 cut(s)	16, 595
SsiI	CCGC	1 cut(s)	503
SspMI	CTAG	6 cut(s)	36, 381, 494, 510, 554, 590
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	353, 411
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	168, 406, 581
TasI	AATT	2 cut(s)	16, 595
TatI	WGTACW	1 cut(s)	38
Tru1I	TTAA	4 cut(s)	15, 120, 300, 573
Tru9I	TTAA	4 cut(s)	15, 120, 300, 573
TseI	GCWGC	2 cut(s)	71, 557
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	228
Vha464I	CTTAAG	1 cut(s)	572
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	1 cut(s)	595
XbaI	TCTAGA	2 cut(s)	509, 589
XmiI	GTMKAC	1 cut(s)	233
XspI	CTAG	6 cut(s)	36, 381, 494, 510, 554, 590
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.