Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011656

Physical Location & Seq

Genomic Coordinates Reverse (-)

64832273 .. 64833618

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG416300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCCTGGTGAAGCTGAAGACTTGGAAAACAACAGAGGAGGAGTGAAGCACAGAGCAAACGGAGAGAGCTACTCATCGTCTACGTATGTTGCAGATGACGCAGAGACCCAATGGACTTCGTGGTTGGTGCCCATGTTGGTTGTGATTAACCTTTTTGTATTCCTTGTGGCCATGTTTATGAATGACTGCCCCAACCACAGTTCTGGGATCATAGGCAAGTGTGTGGCTAGGGTTCTTGGCAGGTTCTCGTTTCAACCGTTGAAGGAGAACCCCCTCTTAGGCCCTTCTTCTTCCACATTGGAAAAGTTGGGAGCTTTGGAGTGGAGCAAAGTGGTGCACAAGCATCAGGGATGGAGACTTGTTACTTGTATTTGGTTACATGCTGGAGTAGTACATCTGGTTGTTAACATGCTCAGCTTGGTCTTCATCGGAATTCGTATAGAGCAGCAATTTGGGCTTGTGCGAGTTGGGATTATATACTTGTTGTCTGGATTTGGGGGTAGCATCATGTCGTCTCTTTTTATTCGAGAGAACATTTCTGTTGGTGCATCGGGTGCTCTTTTTGGTCTTCTTGGATCAATGCTTTCGGAACTAATTACGAATTGGACTATTTATACCAACAAGGTTGCAGCTCTTGCTACTCTTCTGGTCATCATTCTCATTAACCTTGGCATTGGAATTTTGCCACGCGTTGATAATTTTGCCCACATTGGTGGATTTATCACCGGATTCCTCATTGGATTTGTGTTGATGCCCCGTCCTCAATACGGATGGCTGGAGCAGCTGAATCTTCCAGCTGGTGCTAATGCCAATGTCAAGTCCAAATTCAAGGCCTACCAATATGTGTTATGGCTTCTTTCGGTTACTCTGTTGATTGTTGGGTTTACAATTGCACTGGTGATGCTGTTTCGGGCCGAGAATGGAAATGAGCATTGCCATTGGTGTCACTACCTCAGTTGTGTTCCCACATCTAGATGGCAGTGTGAAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

331

Amino Acids

36.61

Weight (kDa)

7.66

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	115 - 252	2.2e-44	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07250 AT5G07250
fragaria_vesca	FvH4_7g29110 FvH4_7g29110
malus_domestica	MD01G1198000.v1.1 MD07G1265600.v1.1
prunus_persica	Prupe.2G291300_v2.0.a1
pyrus_communis	pycom01g20810 pycom07g24380
rosa_chinensis	RchiOBHm_Chr1g0376861
rosa_laevigata	RLG00000026564
rosa_multiflora	Rmu_sc0002113.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281670
rosa_rugosa	Rorug01G0399100
rosa_samantha	Rh1AG416300 Rh1BG375600 Rh1CG389400 Rh1DG406200
rosa_wichuraiana	Rw1G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	1 cut(s)	690
AclWI	GGATC	2 cut(s)	215, 583
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	3 cut(s)	432, 678, 824
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	2 cut(s)	278, 767
AflIII	ACRYGT	1 cut(s)	688
AgsI	TTSAA	3 cut(s)	254, 262, 829
AjnI	CCWGG	1 cut(s)	4
AleI	CACNNNNGTG	1 cut(s)	711
AluBI	AGCT	7 cut(s)	14, 69, 314, 417, 632, 784, 797
AluI	AGCT	7 cut(s)	14, 69, 314, 417, 632, 784, 797
Alw21I	GWGCWC	2 cut(s)	339, 559
Alw26I	GTCTC	3 cut(s)	98, 349, 519
Alw44I	GTGCAC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	215, 583
AoxI	GGCC	4 cut(s)	168, 280, 831, 912
ApaLI	GTGCAC	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	445, 629, 781
ApoI	RAATTY	3 cut(s)	432, 678, 824
AspS9I	GGNCC	2 cut(s)	281, 912
AsuHPI	GGTGA	3 cut(s)	20, 715, 910
BaeGI	GKGCMC	2 cut(s)	132, 339
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	127
BbsI	GAAGAC	3 cut(s)	24, 415, 560
Bbv12I	GWGCWC	2 cut(s)	339, 559
BbvI	GCAGC	3 cut(s)	457, 641, 793
BccI	CCATC	3 cut(s)	345, 765, 969
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	3 cut(s)	98, 349, 519
BfaI	CTAG	2 cut(s)	228, 972
BfuAI	ACCTGC	1 cut(s)	231
BisI	GCNGC	3 cut(s)	446, 630, 782
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	3 cut(s)	447, 631, 783
Bme1390I	CCNGG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	281, 912
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	5 cut(s)	352, 513, 557, 741, 891
BpiI	GAAGAC	3 cut(s)	24, 415, 560
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	2 cut(s)	405, 797
Bpu1102I	GCTNAGC	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	667
BsaWI	WCCGGW	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 767
Bse1I	ACTGG	1 cut(s)	900
Bse3DI	GCAATG	1 cut(s)	931
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	667
BseGI	GGATG	2 cut(s)	356, 776
BseLI	CCNNNNNNNGG	2 cut(s)	278, 767
BseMI	GCAATG	1 cut(s)	931
BseMII	CTCAG	2 cut(s)	427, 967
BseNI	ACTGG	1 cut(s)	900
BseRI	GAGGAG	2 cut(s)	51, 54
BseSI	GKGCMC	2 cut(s)	132, 339
BseXI	GCAGC	3 cut(s)	457, 641, 793
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	4 cut(s)	170, 282, 833, 914
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	339, 559
BsiSI	CCGG	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	278, 767
BsmAI	GTCTC	3 cut(s)	98, 349, 519
BsmBI	CGTCTC	1 cut(s)	519
BsnI	GGCC	4 cut(s)	170, 282, 833, 914
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	132, 339, 559
Bsp143I	GATC	2 cut(s)	207, 575
Bsp1720I	GCTNAGC	1 cut(s)	413
BspANI	GGCC	4 cut(s)	170, 282, 833, 914
BspCNI	CTCAG	2 cut(s)	426, 966
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	215, 583
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	931
BsrI	ACTGG	1 cut(s)	900
BssECI	CCNNGG	1 cut(s)	667
BssMI	GATC	2 cut(s)	207, 575
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	200, 258
Bst6I	CTCTTC	1 cut(s)	648
BstAPI	GCANNNNNTGC	2 cut(s)	554, 635
BstBAI	YACGTR	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	277, 413, 953
BstF5I	GGATG	2 cut(s)	356, 776
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	2 cut(s)	210, 578
BstMAI	GTCTC	3 cut(s)	98, 349, 519
BstMBI	GATC	2 cut(s)	207, 575
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 454, 554, 635, 781
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	2 cut(s)	383, 412
BstSCI	CCNGG	1 cut(s)	4
BstSLI	GKGCMC	2 cut(s)	132, 339
BstSNI	TACGTA	1 cut(s)	84
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	3 cut(s)	457, 641, 793
BstV2I	GAAGAC	3 cut(s)	24, 415, 560
BstXI	CCANNNNNNTGG	2 cut(s)	203, 713
BsuRI	GGCC	4 cut(s)	170, 282, 833, 914
BtsCI	GGATG	2 cut(s)	356, 776
BtsI	GCAGTG	1 cut(s)	986
BtsIMutI	CAGTG	2 cut(s)	893, 986
BveI	ACCTGC	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	281, 912
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	5 cut(s)	133, 172, 380, 409, 508
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	3 cut(s)	277, 413, 953
DpnI	GATC	2 cut(s)	209, 577
DpnII	GATC	2 cut(s)	207, 575
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco105I	TACGTA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	667
Eco147I	AGGCCT	1 cut(s)	833
Eco31I	GGTCTC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	667
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	5 cut(s)	136, 175, 383, 412, 511
FatI	CATG	5 cut(s)	132, 171, 379, 408, 507
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	446, 630, 782
FokI	GGATG	2 cut(s)	363, 783
Fsp4HI	GCNGC	3 cut(s)	446, 630, 782
FspBI	CTAG	2 cut(s)	228, 972
GluI	GCNGC	3 cut(s)	446, 630, 782
GsuI	CTGGAG	2 cut(s)	405, 797
HaeIII	GGCC	4 cut(s)	170, 282, 833, 914
HapII	CCGG	1 cut(s)	726
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	5 cut(s)	136, 175, 383, 412, 511
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	2 cut(s)	729, 787
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	726
HphI	GGTGA	3 cut(s)	20, 715, 910
Hpy166II	GTNNAC	4 cut(s)	81, 337, 406, 885
Hpy188I	TCNGA	2 cut(s)	431, 589
Hpy188III	TCNNGA	3 cut(s)	489, 527, 972
Hpy8I	GTNNAC	4 cut(s)	81, 337, 406, 885
HpyAV	CCTTC	2 cut(s)	256, 294
HpyCH4III	ACNGT	2 cut(s)	200, 258
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	5 cut(s)	92, 337, 548, 629, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 454, 554, 635, 781
HpyF3I	CTNAG	3 cut(s)	277, 413, 953
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	5 cut(s)	136, 175, 383, 412, 511
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	207, 575
LmnI	GCTCC	3 cut(s)	311, 324, 778
Lsp1109I	GCAGC	3 cut(s)	457, 641, 793
LweI	GCATC	5 cut(s)	352, 513, 557, 741, 891
MaeI	CTAG	2 cut(s)	228, 972
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	4 cut(s)	361, 375, 862, 944
MalI	GATC	2 cut(s)	209, 577
MboI	GATC	2 cut(s)	207, 575
MboII	GAAGA	7 cut(s)	29, 279, 282, 415, 560, 635, 782
MfeI	CAATTG	1 cut(s)	888
MhlI	GDGCHC	3 cut(s)	132, 339, 559
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	9 cut(s)	432, 449, 594, 601, 678, 697, 824, 888, 991
MluI	ACGCGT	1 cut(s)	688
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	6 cut(s)	29, 32, 284, 743, 771, 962
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	4 cut(s)	147, 405, 663, 994
MslI	CAYNNNNRTG	3 cut(s)	176, 711, 973
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	2 cut(s)	784, 797
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	5 cut(s)	98, 454, 554, 635, 781
NdeII	GATC	2 cut(s)	207, 575
NlaIII	CATG	5 cut(s)	136, 175, 383, 412, 511
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	940
NmuCI	GTSAC	1 cut(s)	944
NspI	RCATGY	2 cut(s)	383, 412
OliI	CACNNNNGTG	1 cut(s)	711
PceI	AGGCCT	1 cut(s)	833
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	729, 787
PkrI	GCNGC	3 cut(s)	447, 631, 783
Ppu21I	YACGTR	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	281, 912
PvuII	CAGCTG	2 cut(s)	784, 797
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	3 cut(s)	176, 711, 973
SaqAI	TTAA	4 cut(s)	147, 405, 663, 994
SatI	GCNGC	3 cut(s)	446, 630, 782
Sau3AI	GATC	2 cut(s)	207, 575
Sau96I	GGNCC	2 cut(s)	281, 912
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	3 cut(s)	132, 339, 559
SfaNI	GCATC	5 cut(s)	352, 513, 557, 741, 891
SmiMI	CAYNNNNRTG	3 cut(s)	176, 711, 973
SnaBI	TACGTA	1 cut(s)	84
Sse9I	AATT	9 cut(s)	432, 449, 594, 601, 678, 697, 824, 888, 991
SseBI	AGGCCT	1 cut(s)	833
SspMI	CTAG	2 cut(s)	228, 972
StuI	AGGCCT	1 cut(s)	833
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	2 cut(s)	200, 258
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	526
TasI	AATT	9 cut(s)	432, 449, 594, 601, 678, 697, 824, 888, 991
TatI	WGTACW	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	729, 787
Tru1I	TTAA	4 cut(s)	147, 405, 663, 994
Tru9I	TTAA	4 cut(s)	147, 405, 663, 994
TscAI	CASTG	2 cut(s)	900, 986
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	3 cut(s)	445, 629, 781
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	2 cut(s)	194, 415
TspGWI	ACGGA	2 cut(s)	75, 783
TspRI	CASTG	2 cut(s)	900, 986
VneI	GTGCAC	1 cut(s)	335
XapI	RAATTY	3 cut(s)	432, 678, 824
XbaI	TCTAGA	1 cut(s)	971
XceI	RCATGY	2 cut(s)	383, 412
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	2 cut(s)	228, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.