Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011656

Physical Location & Seq

Genomic Coordinates Reverse (-)

33397642 .. 33399611

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1265600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTGGAAAACAGGCGAGCGAAAAACAGAGCAAGACAGCAGAGGCTACTCGTCGTCCTCGTACGGGGTCGATGATTCGGAAGCCCAGTGGACTTCTTGGTTGGTGCCAATGATTGTTGTCGCCAATATTGGAGTGTTTCTGTTGGTCATGTACGTCAATAACTGTCCCAAGAACAATTATGTGGCCGCGGAGGGGAAGTGCACGGCGAGGTTTCTCGGGCGGTTGTCGTTTCAGCCTCTGAAGGAGAACCCTCTATTCGGCCCTTCTTCCTCCACATTAGAGAAGTTAGGGGCTTTGGAGTGGACCAAAGTTGTGCATAAGCATCAGGGATGGAGGCTGGTCACTTGCATTTGGTTGCATGCTGGCATAATCCACCTGGTTGCTAACATGCTCAGCCTTGTCTTCATCGGAATCCGCCTTGAGCAGCAATTCGGATTTGTAAGAGTTGGAATTATATATCTGCTGTGTGGATTTGGAGGGAGCATACTTTCCTCGCTTTTTATTCGAAAGAACATCTCCGTTGGTGCCTCTGGTGCTCTTTTCGGGTTTCTAGGAGCAATGCTTTCAGAACTAATTACAAATTGGACCATCTACACCAACAAGGTTGCAGCCCTTTTCACACTTTTAATCATCGTTGTTATAAACCTTGCCGTTGGAATTTTACCACACGTAGATAACTTTGCTCACATTGGCGGTTTTCTTACGGGTTTCCTCATCGGCTTTATCTTGATGGCCCGCCCTCGCTTTGGGTGGTTGGAGAACCCGAATCTTCCTGCCGGAGTCAGTGTCGTCAAGTCCAAGTACAAGGGATACCAATATGTGCTATGGATACTCTCTCTCGTTCTGCTCATCGTCGGATTCACATTTGCATTGTTGATGCTCCACCGCGGAGAGAACGGAAATGACCGTTGCCATTGGTGTCACTACCTCAGCTGTGTTCCCACATCTAGATGGCATTGTGAAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

324

Amino Acids

36.08

Weight (kDa)

9.1

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	108 - 245	2e-43	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07250 AT5G07250
fragaria_vesca	FvH4_7g29110 FvH4_7g29110
malus_domestica	MD01G1198000.v1.1 MD07G1265600.v1.1
prunus_persica	Prupe.2G291300_v2.0.a1
pyrus_communis	pycom01g20810 pycom07g24380
rosa_chinensis	RchiOBHm_Chr1g0376861
rosa_laevigata	RLG00000026564
rosa_multiflora	Rmu_sc0002113.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281670
rosa_rugosa	Rorug01G0399100
rosa_samantha	Rh1AG416300 Rh1BG375600 Rh1CG389400 Rh1DG406200
rosa_wichuraiana	Rw1G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	641
AccB1I	GGYRCC	2 cut(s)	103, 524
AccII	CGCG	2 cut(s)	188, 888
AciI	CCGC	8 cut(s)	186, 188, 220, 415, 693, 736, 886, 888
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	3 cut(s)	62, 152, 803
AfiI	CCNNNNNNNGG	4 cut(s)	63, 192, 257, 746
AflIII	ACRYGT	1 cut(s)	667
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	1 cut(s)	933
AluI	AGCT	1 cut(s)	933
Alw21I	GWGCWC	2 cut(s)	203, 538
Alw44I	GTGCAC	1 cut(s)	199
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	183, 259, 732
ApaLI	GTGCAC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	424, 608
ApoI	RAATTY	1 cut(s)	657
AspS9I	GGNCC	4 cut(s)	260, 303, 585, 733
AsuII	TTCGAA	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	303, 585
BaeGI	GKGCMC	1 cut(s)	203
BanI	GGYRCC	2 cut(s)	103, 524
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	2 cut(s)	203, 538
BbvCI	CCTCAGC	1 cut(s)	929
BbvI	GCAGC	2 cut(s)	436, 620
BccI	CCATC	4 cut(s)	324, 596, 724, 945
BceAI	ACGGC	2 cut(s)	219, 635
BciT130I	CCWGG	1 cut(s)	377
BciVI	GTATCC	2 cut(s)	803, 822
BfaI	CTAG	2 cut(s)	551, 948
BfuI	GTATCC	2 cut(s)	803, 822
BisI	GCNGC	3 cut(s)	186, 425, 609
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	3 cut(s)	187, 426, 610
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	2 cut(s)	303, 585
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	4 cut(s)	260, 303, 585, 733
BmiI	GGNNCC	2 cut(s)	105, 526
BmrFI	CCNGG	1 cut(s)	377
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	331, 867
BmuI	ACTGGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	929
Bpu1102I	GCTNAGC	1 cut(s)	392
Bpu14I	TTCGAA	1 cut(s)	505
BpuEI	CTTGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	670
BsaJI	CCNNGG	2 cut(s)	186, 886
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 771, 801
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 192, 257, 746
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	2 cut(s)	186, 886
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	4 cut(s)	63, 192, 257, 746
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	2 cut(s)	406, 943
BseNI	ACTGG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	436, 620
Bsh1236I	CGCG	2 cut(s)	188, 888
BshFI	GGCC	3 cut(s)	185, 261, 734
BshNI	GGYRCC	2 cut(s)	103, 524
BsiHKAI	GWGCWC	2 cut(s)	203, 538
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	777
BsiWI	CGTACG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	4 cut(s)	63, 192, 257, 746
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	185, 261, 734
BsoBI	CYCGRG	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	203, 538
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	8 cut(s)	186, 188, 220, 415, 693, 736, 886, 888
BspANI	GGCC	3 cut(s)	185, 261, 734
BspCNI	CTCAG	2 cut(s)	405, 942
BspFNI	CGCG	2 cut(s)	188, 888
BspLI	GGNNCC	2 cut(s)	105, 526
BspT104I	TTCGAA	1 cut(s)	505
BspT107I	GGYRCC	2 cut(s)	103, 524
BsrDI	GCAATG	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	186, 886
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	164, 908
BstBAI	YACGTR	1 cut(s)	670
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	4 cut(s)	17, 360, 364, 736
BstDEI	CTNAG	2 cut(s)	392, 929
BstDSI	CCRYGG	2 cut(s)	186, 886
BstF5I	GGATG	1 cut(s)	335
BstFNI	CGCG	2 cut(s)	188, 888
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	2 cut(s)	362, 391
BstSCI	CCNGG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	203
BstUI	CGCG	2 cut(s)	188, 888
BstV1I	GCAGC	2 cut(s)	436, 620
BstV2I	GAAGAC	1 cut(s)	394
BsuI	GTATCC	2 cut(s)	803, 822
BsuRI	GGCC	3 cut(s)	185, 261, 734
BtgI	CCRYGG	2 cut(s)	186, 886
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	2 cut(s)	92, 790
Cac8I	GCNNGC	4 cut(s)	17, 360, 364, 736
CaiI	CAGNNNCTG	1 cut(s)	238
Cfr13I	GGNCC	4 cut(s)	260, 303, 585, 733
Cfr42I	CCGCGG	2 cut(s)	189, 889
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	61, 151, 802
CviAII	CATG	3 cut(s)	148, 359, 388
CviQI	GTAC	3 cut(s)	61, 151, 802
DdeI	CTNAG	2 cut(s)	392, 929
EaeI	YGGCCR	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	404
Eco47I	GGWCC	2 cut(s)	303, 585
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	151, 362, 391
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	3 cut(s)	147, 358, 387
FauI	CCCGC	1 cut(s)	743
Fnu4HI	GCNGC	3 cut(s)	186, 425, 609
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	3 cut(s)	186, 425, 609
FspBI	CTAG	2 cut(s)	551, 948
GluI	GCNGC	3 cut(s)	186, 425, 609
HaeIII	GGCC	3 cut(s)	185, 261, 734
HapII	CCGG	1 cut(s)	777
Hin1II	CATG	3 cut(s)	151, 362, 391
HinfI	GANTC	5 cut(s)	74, 411, 766, 780, 858
HpaII	CCGG	1 cut(s)	777
Hpy166II	GTNNAC	3 cut(s)	90, 201, 303
Hpy188I	TCNGA	6 cut(s)	79, 240, 410, 434, 568, 857
Hpy188III	TCNNGA	2 cut(s)	727, 948
Hpy8I	GTNNAC	3 cut(s)	90, 201, 303
Hpy99I	CGWCG	2 cut(s)	55, 857
HpyAV	CCTTC	2 cut(s)	235, 273
HpyCH4III	ACNGT	2 cut(s)	164, 908
HpyCH4IV	ACGT	2 cut(s)	153, 669
HpyCH4V	TGCA	6 cut(s)	201, 316, 348, 358, 608, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	2 cut(s)	392, 929
HpySE526I	ACGT	2 cut(s)	153, 669
Hsp92II	CATG	3 cut(s)	151, 362, 391
KspI	CCGCGG	2 cut(s)	189, 889
LmnI	GCTCC	3 cut(s)	480, 554, 885
LpnPI	CCDG	9 cut(s)	98, 311, 323, 348, 362, 389, 516, 786, 790
Lsp1109I	GCAGC	2 cut(s)	436, 620
LweI	GCATC	2 cut(s)	331, 867
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	2 cut(s)	551, 948
MaeII	ACGT	2 cut(s)	153, 669
MaeIII	GTNAC	2 cut(s)	340, 920
MboII	GAAGA	3 cut(s)	258, 394, 761
MhlI	GDGCHC	2 cut(s)	203, 538
MluCI	AATT	7 cut(s)	175, 428, 450, 573, 580, 657, 967
MlyI	GAGTC	1 cut(s)	789
MmeI	TCCRAC	4 cut(s)	427, 634, 735, 835
MseI	TTAA	2 cut(s)	626, 970
MslI	CAYNNNNRTG	1 cut(s)	949
MspA1I	CMGCKG	3 cut(s)	188, 888, 933
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	2 cut(s)	188, 888
MwoI	GCNNNNNNNGC	1 cut(s)	533
NlaIII	CATG	3 cut(s)	151, 362, 391
NlaIV	GGNNCC	2 cut(s)	105, 526
NmuCI	GTSAC	2 cut(s)	340, 920
NspI	RCATGY	2 cut(s)	362, 391
NspV	TTCGAA	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	4 cut(s)	74, 411, 766, 858
Pfl23II	CGTACG	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	187, 426, 610
PleI	GAGTC	1 cut(s)	788
PpsI	GAGTC	1 cut(s)	788
Ppu21I	YACGTR	1 cut(s)	670
PsiI	TTATAA	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspLI	CGTACG	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	105, 526
PspPI	GGNCC	4 cut(s)	260, 303, 585, 733
PstNI	CAGNNNCTG	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	933
RsaI	GTAC	3 cut(s)	62, 152, 803
RsaNI	GTAC	3 cut(s)	61, 151, 802
RseI	CAYNNNNRTG	1 cut(s)	949
SacII	CCGCGG	2 cut(s)	189, 889
SaqAI	TTAA	2 cut(s)	626, 970
SatI	GCNGC	3 cut(s)	186, 425, 609
Sau96I	GGNCC	4 cut(s)	260, 303, 585, 733
SchI	GAGTC	1 cut(s)	789
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	2 cut(s)	203, 538
SetI	ASST	8 cut(s)	156, 212, 378, 606, 648, 672, 930, 935
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	331, 867
Sfr303I	CCGCGG	2 cut(s)	189, 889
SfuI	TTCGAA	1 cut(s)	505
SgrBI	CCGCGG	2 cut(s)	189, 889
SinI	GGWCC	2 cut(s)	303, 585
SmiMI	CAYNNNNRTG	1 cut(s)	949
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	7 cut(s)	175, 428, 450, 573, 580, 657, 967
SsiI	CCGC	8 cut(s)	186, 188, 220, 415, 693, 736, 886, 888
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	2 cut(s)	551, 948
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	164, 908
TaiI	ACGT	2 cut(s)	156, 672
TaqI	TCGA	2 cut(s)	69, 505
TasI	AATT	7 cut(s)	175, 428, 450, 573, 580, 657, 967
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	74, 411, 766, 858
Tru1I	TTAA	2 cut(s)	626, 970
Tru9I	TTAA	2 cut(s)	626, 970
TscAI	CASTG	2 cut(s)	92, 790
TseFI	GTSAC	2 cut(s)	340, 920
TseI	GCWGC	2 cut(s)	424, 608
Tsp45I	GTSAC	2 cut(s)	340, 920
TspDTI	ATGAA	1 cut(s)	394
TspGWI	ACGGA	2 cut(s)	508, 912
TspRI	CASTG	2 cut(s)	92, 790
VneI	GTGCAC	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	303, 585
XapI	RAATTY	1 cut(s)	657
XbaI	TCTAGA	1 cut(s)	947
XceI	RCATGY	2 cut(s)	362, 391
XspI	CTAG	2 cut(s)	551, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.