Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011656

Physical Location & Seq

Genomic Coordinates Reverse (-)

50765501 .. 50768594

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0399100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGCAAGGATCATCAGATGCTTGTTGACATATTTGTGAACTATGACTGCGATCTTGAGGCACTAAACTTGTTTGAGTGGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGTTGCGTCCCAGACTACTTCAATAAAGGGTTCGTCTCTTCTGTGTCTTGTGAATGTGCTTAAATCACTCATAGATTGGGAAAAGTCATGTGGAGAATCAGATAGAATAAAAACATTCAGTCTTTGGAAGGAGATGCTTCAACTAAAGAGTGTTGATGTGAAAAGCAGGCAAGATGCAACCATTAACTTTGAGAAGGCAAAAGCTCATAAGTCTACAGTGGAATCTGCCATATTTGAGGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

131

Amino Acids

14.97

Weight (kDa)

6.14

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec7-like_HUS	PF12783	2 - 32	1e-07	Mon2/Sec7/BIG1-like, HUS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07250 AT5G07250
fragaria_vesca	FvH4_7g29110 FvH4_7g29110
malus_domestica	MD01G1198000.v1.1 MD07G1265600.v1.1
prunus_persica	Prupe.2G291300_v2.0.a1
pyrus_communis	pycom01g20810 pycom07g24380
rosa_chinensis	RchiOBHm_Chr1g0376861
rosa_laevigata	RLG00000026564
rosa_multiflora	Rmu_sc0002113.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281670
rosa_rugosa	Rorug01G0399100
rosa_samantha	Rh1AG416300 Rh1BG375600 Rh1CG389400 Rh1DG406200
rosa_wichuraiana	Rw1G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	45, 132
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	23, 171, 290
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	2 cut(s)	45, 132
AxyI	CCTNAGG	1 cut(s)	11
BccI	CCATC	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	363
BmsI	GCATC	4 cut(s)	36, 115, 273, 313
BpuEI	CTTGAG	2 cut(s)	103, 104
BsaBI	GATNNNNATC	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse21I	CCTNAGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	113
BseGI	GGATG	3 cut(s)	21, 114, 130
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	37, 79, 137
BspPI	GGATC	2 cut(s)	45, 132
BssMI	GATC	3 cut(s)	37, 79, 137
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	3 cut(s)	21, 114, 130
BstKTI	GATC	3 cut(s)	40, 82, 140
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	3 cut(s)	37, 79, 137
BstSFI	CTRYAG	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	21, 114, 130
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	317
CseI	GACGC	1 cut(s)	144
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	2 cut(s)	149, 353
CviKI_1	RGCY	2 cut(s)	149, 353
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	39, 81, 139
DpnII	GATC	3 cut(s)	37, 79, 137
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	1 cut(s)	240
FaiI	YATR	7 cut(s)	59, 72, 146, 221, 238, 357, 380
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	1 cut(s)	236
FblI	GTMKAC	1 cut(s)	362
FokI	GGATG	3 cut(s)	28, 121, 137
HgaI	GACGC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	245, 371
Hpy166II	GTNNAC	3 cut(s)	55, 67, 363
Hpy188I	TCNGA	2 cut(s)	45, 250
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	3 cut(s)	55, 67, 363
HpyAV	CCTTC	2 cut(s)	271, 337
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	33, 128, 135, 326
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	37, 79, 137
LpnPI	CCDG	2 cut(s)	173, 301
LweI	GCATC	4 cut(s)	36, 115, 273, 313
MalI	GATC	3 cut(s)	39, 81, 139
MboI	GATC	3 cut(s)	37, 79, 137
MboII	GAAGA	1 cut(s)	179
MflI	RGATCY	1 cut(s)	137
MnlI	CCTC	2 cut(s)	79, 379
MseI	TTAA	2 cut(s)	210, 333
MslI	CAYNNNNRTG	1 cut(s)	62
NdeII	GATC	3 cut(s)	37, 79, 137
NlaIII	CATG	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	245, 371
PsuI	RGATCY	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	210, 333
Sau3AI	GATC	3 cut(s)	37, 79, 137
SetI	ASST	3 cut(s)	30, 355, 390
SfaNI	GCATC	4 cut(s)	36, 115, 273, 313
SfcI	CTRYAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	2 cut(s)	83, 118
SmoI	CTYRAG	2 cut(s)	83, 118
TaaI	ACNGT	1 cut(s)	367
TfiI	GAWTC	2 cut(s)	245, 371
Tru1I	TTAA	2 cut(s)	210, 333
Tru9I	TTAA	2 cut(s)	210, 333
TscAI	CASTG	1 cut(s)	372
TspDTI	ATGAA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.