Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011656

Physical Location & Seq

Genomic Coordinates Reverse (-)

25098001 .. 25100200

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24380.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCCTGCAGCTTGTGAAGATGTGGAAAACAGGCGAGCGAAAAACAGAGCAAGACAGCAGAGCTACTCGTCGTCCTCGTACGGGGTCGATGATTCGGAAGCCCAGTGGACTTCTTGGTTGGTGCCAATGATTGTTGTGGCCAATCTTGGAGTCTTTCTGTTGGTCATGTACGTCAATAACTGTCCCAAGAACAATTATGCGGCCGCGCAGGGGAAGTGCACGGCGAGGTTTCTCGGGCGGTTGTCGTTTCAGCCTCTGAAGGAGAACCCTCTATTCGGTCCTTCTTCCTCCACATTGGAGAAGTTAGGGGCTTTGGAGTGGACCAAAGTTGTGCATAAGCATCAGGGATGGAGGCTGGTCACTTGCATTTGGTTGCATGCTGGCATAATCCACCTGGTTGCTAACATGCTCAGCCTTGTCTTCATCGGAATCCGCCTTGAGCAGCAATTCGGATTTGTAAGAGTTGGAATTATATATCTGCTGTGTGGATTTGGAGGGAGCATACTTTCCTCGCTTTTTATTCGAAAGAACATCTCCGTTGGTGCCTCTGGTGCGCTTTTCGGGCTTCTCGGAGCAATGCTTTCAGAACTAATTACAAATTGGACCATCTACACCAACAAGGTTGCAGCCCTTCTCACACTTTTAATCATCGTTGTCATAAACCTTGCCGTTGGAATTTTACCACACGTAGATAACTTTGCTCACATTGGCGGTTTTCTTACGGGTTTCCTCATCGGCTTTGTCTTGATGCCCCGCCCTCGCTTTGGGTGGTTGGAGAACCCGAATCTTCCTGCCGGAGTCAAAGTCGTCAAGTCCAAGTACAAGGGATACCAATATGTGCTATGGATACTCTCTCTCGTTCTGCTCATCGTCGGATTCACATTTGCATTGTTGATGCTCCACCGCGGAGAGAACGGAAATGACCGTTGTCATTGGTGTCACTACCTCAGCTGTGTTCCCACATCTAGATGGCATTGTGAAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

330

Amino Acids

36.66

Weight (kDa)

9.31

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07250 AT5G07250
fragaria_vesca	FvH4_7g29110 FvH4_7g29110
malus_domestica	MD01G1198000.v1.1 MD07G1265600.v1.1
prunus_persica	Prupe.2G291300_v2.0.a1
pyrus_communis	pycom01g20810 pycom07g24380
rosa_chinensis	RchiOBHm_Chr1g0376861
rosa_laevigata	RLG00000026564
rosa_multiflora	Rmu_sc0002113.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281670
rosa_rugosa	Rorug01G0399100
rosa_samantha	Rh1AG416300 Rh1BG375600 Rh1CG389400 Rh1DG406200
rosa_wichuraiana	Rw1G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	121, 542
AccII	CGCG	2 cut(s)	206, 906
AciI	CCGC	8 cut(s)	200, 204, 238, 433, 711, 754, 904, 906
AcoI	YGGCCR	2 cut(s)	138, 201
AcsI	RAATTY	1 cut(s)	675
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	3 cut(s)	80, 170, 821
AfiI	CCNNNNNNNGG	4 cut(s)	81, 210, 275, 764
AflIII	ACRYGT	1 cut(s)	685
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	3 cut(s)	11, 63, 951
AluI	AGCT	3 cut(s)	11, 63, 951
Alw21I	GWGCWC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	138, 201
ApaLI	GTGCAC	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	8, 442, 626
ApoI	RAATTY	1 cut(s)	675
AspLEI	GCGC	2 cut(s)	208, 556
AspS9I	GGNCC	3 cut(s)	278, 321, 603
AsuII	TTCGAA	1 cut(s)	523
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	3 cut(s)	278, 321, 603
BaeGI	GKGCMC	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	121, 542
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	947
BbvI	GCAGC	3 cut(s)	20, 454, 638
BccI	CCATC	3 cut(s)	342, 614, 963
BceAI	ACGGC	2 cut(s)	237, 653
BciT130I	CCWGG	1 cut(s)	395
BciVI	GTATCC	2 cut(s)	821, 840
BfaI	CTAG	1 cut(s)	966
BfmI	CTRYAG	1 cut(s)	6
BfuI	GTATCC	2 cut(s)	821, 840
BisI	GCNGC	5 cut(s)	9, 201, 204, 443, 627
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	5 cut(s)	10, 202, 205, 444, 628
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	3 cut(s)	278, 321, 603
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	278, 321, 603
BmiI	GGNNCC	2 cut(s)	123, 544
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	3 cut(s)	349, 738, 885
BmuI	ACTGGG	1 cut(s)	97
BoxI	GACNNNNGTC	1 cut(s)	927
BpiI	GAAGAC	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	947
Bpu1102I	GCTNAGC	1 cut(s)	410
Bpu14I	TTCGAA	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	458
BsaAI	YACGTR	1 cut(s)	688
BsaJI	CCNNGG	1 cut(s)	904
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 210, 275, 764
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	904
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	4 cut(s)	81, 210, 275, 764
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	424, 961
BseNI	ACTGG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	221
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	3 cut(s)	20, 454, 638
Bsh1236I	CGCG	2 cut(s)	206, 906
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	140, 203
BshNI	GGYRCC	2 cut(s)	121, 542
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	795
BsiWI	CGTACG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	4 cut(s)	81, 210, 275, 764
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	140, 203
BsoBI	CYCGRG	1 cut(s)	233
Bsp119I	TTCGAA	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp1720I	GCTNAGC	1 cut(s)	410
BspACI	CCGC	8 cut(s)	200, 204, 238, 433, 711, 754, 904, 906
BspANI	GGCC	2 cut(s)	140, 203
BspCNI	CTCAG	2 cut(s)	423, 960
BspFNI	CGCG	2 cut(s)	206, 906
BspLI	GGNNCC	2 cut(s)	123, 544
BspMAI	CTGCAG	1 cut(s)	10
BspT104I	TTCGAA	1 cut(s)	523
BspT107I	GGYRCC	2 cut(s)	121, 542
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	904
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	2 cut(s)	182, 926
BstBAI	YACGTR	1 cut(s)	688
BstBI	TTCGAA	1 cut(s)	523
BstC8I	GCNNGC	4 cut(s)	6, 36, 378, 382
BstDEI	CTNAG	2 cut(s)	410, 947
BstDSI	CCRYGG	1 cut(s)	904
BstF5I	GGATG	1 cut(s)	353
BstFNI	CGCG	2 cut(s)	206, 906
BstHHI	GCGC	2 cut(s)	208, 556
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 562
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	2 cut(s)	380, 409
BstPAI	GACNNNNGTC	1 cut(s)	927
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	2 cut(s)	206, 906
BstV1I	GCAGC	3 cut(s)	20, 454, 638
BstV2I	GAAGAC	1 cut(s)	412
BstZI	CGGCCG	1 cut(s)	201
BsuI	GTATCC	2 cut(s)	821, 840
BsuRI	GGCC	2 cut(s)	140, 203
BtgI	CCRYGG	1 cut(s)	904
BtsCI	GGATG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	4 cut(s)	6, 36, 378, 382
CaiI	CAGNNNCTG	1 cut(s)	256
CciNI	GCGGCCGC	1 cut(s)	201
CfoI	GCGC	2 cut(s)	208, 556
Cfr13I	GGNCC	3 cut(s)	278, 321, 603
Cfr42I	CCGCGG	1 cut(s)	907
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	79, 169, 820
CviAII	CATG	3 cut(s)	166, 377, 406
CviQI	GTAC	3 cut(s)	79, 169, 820
DdeI	CTNAG	2 cut(s)	410, 947
EaeI	YGGCCR	2 cut(s)	138, 201
EagI	CGGCCG	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	422
EclXI	CGGCCG	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	278, 321, 603
Eco52I	CGGCCG	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	393
FaeI	CATG	3 cut(s)	169, 380, 409
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	165, 376, 405
FauI	CCCGC	1 cut(s)	761
Fnu4HI	GCNGC	5 cut(s)	9, 201, 204, 443, 627
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	5 cut(s)	9, 201, 204, 443, 627
FspBI	CTAG	1 cut(s)	966
GlaI	GCGC	2 cut(s)	207, 555
GluI	GCNGC	5 cut(s)	9, 201, 204, 443, 627
HaeIII	GGCC	2 cut(s)	140, 203
HapII	CCGG	1 cut(s)	795
HhaI	GCGC	2 cut(s)	208, 556
Hin1II	CATG	3 cut(s)	169, 380, 409
Hin6I	GCGC	2 cut(s)	206, 554
HinP1I	GCGC	2 cut(s)	206, 554
HinfI	GANTC	6 cut(s)	92, 150, 429, 784, 798, 876
HpaII	CCGG	1 cut(s)	795
Hpy166II	GTNNAC	3 cut(s)	108, 219, 321
Hpy188I	TCNGA	7 cut(s)	97, 258, 428, 452, 572, 586, 875
Hpy188III	TCNNGA	2 cut(s)	745, 966
Hpy8I	GTNNAC	3 cut(s)	108, 219, 321
Hpy99I	CGWCG	2 cut(s)	73, 875
HpyAV	CCTTC	3 cut(s)	253, 291, 641
HpyCH4III	ACNGT	2 cut(s)	182, 926
HpyCH4IV	ACGT	2 cut(s)	171, 687
HpyCH4V	TGCA	7 cut(s)	8, 219, 334, 366, 376, 626, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 562
HpyF3I	CTNAG	2 cut(s)	410, 947
HpySE526I	ACGT	2 cut(s)	171, 687
Hsp92II	CATG	3 cut(s)	169, 380, 409
HspAI	GCGC	2 cut(s)	206, 554
KspI	CCGCGG	1 cut(s)	907
LmnI	GCTCC	3 cut(s)	498, 572, 903
Lsp1109I	GCAGC	3 cut(s)	20, 454, 638
LweI	GCATC	3 cut(s)	349, 738, 885
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	1 cut(s)	966
MaeII	ACGT	2 cut(s)	171, 687
MaeIII	GTNAC	2 cut(s)	358, 938
MboII	GAAGA	4 cut(s)	29, 276, 412, 779
MhlI	GDGCHC	1 cut(s)	221
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	7 cut(s)	193, 446, 468, 591, 598, 675, 985
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	2 cut(s)	159, 807
MmeI	TCCRAC	4 cut(s)	445, 652, 753, 853
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	644, 988
MslI	CAYNNNNRTG	1 cut(s)	967
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	2 cut(s)	906, 951
MspI	CCGG	1 cut(s)	795
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	2 cut(s)	206, 906
MwoI	GCNNNNNNNGC	2 cut(s)	551, 562
NlaIII	CATG	3 cut(s)	169, 380, 409
NlaIV	GGNNCC	2 cut(s)	123, 544
NmuCI	GTSAC	2 cut(s)	358, 938
NotI	GCGGCCGC	1 cut(s)	201
NspI	RCATGY	2 cut(s)	380, 409
NspV	TTCGAA	1 cut(s)	523
PaeI	GCATGC	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	4 cut(s)	92, 429, 784, 876
Pfl23II	CGTACG	1 cut(s)	78
PkrI	GCNGC	5 cut(s)	10, 202, 205, 444, 628
PleI	GAGTC	2 cut(s)	158, 806
PpsI	GAGTC	2 cut(s)	158, 806
Ppu21I	YACGTR	1 cut(s)	688
PshAI	GACNNNNGTC	1 cut(s)	927
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspLI	CGTACG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	123, 544
PspPI	GGNCC	3 cut(s)	278, 321, 603
PstI	CTGCAG	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	951
RsaI	GTAC	3 cut(s)	80, 170, 821
RsaNI	GTAC	3 cut(s)	79, 169, 820
RseI	CAYNNNNRTG	1 cut(s)	967
SacII	CCGCGG	1 cut(s)	907
SaqAI	TTAA	2 cut(s)	644, 988
SatI	GCNGC	5 cut(s)	9, 201, 204, 443, 627
Sau96I	GGNCC	3 cut(s)	278, 321, 603
SchI	GAGTC	2 cut(s)	159, 807
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	221
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	3 cut(s)	349, 738, 885
SfcI	CTRYAG	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	907
SfuI	TTCGAA	1 cut(s)	523
SgrBI	CCGCGG	1 cut(s)	907
SinI	GGWCC	3 cut(s)	278, 321, 603
SmiMI	CAYNNNNRTG	1 cut(s)	967
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	7 cut(s)	193, 446, 468, 591, 598, 675, 985
SsiI	CCGC	8 cut(s)	200, 204, 238, 433, 711, 754, 904, 906
SspMI	CTAG	1 cut(s)	966
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	182, 926
TaiI	ACGT	2 cut(s)	174, 690
TaqI	TCGA	2 cut(s)	87, 523
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	7 cut(s)	193, 446, 468, 591, 598, 675, 985
TatI	WGTACW	1 cut(s)	819
TauI	GCSGC	2 cut(s)	203, 206
TfiI	GAWTC	4 cut(s)	92, 429, 784, 876
Tru1I	TTAA	2 cut(s)	644, 988
Tru9I	TTAA	2 cut(s)	644, 988
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	2 cut(s)	358, 938
TseI	GCWGC	3 cut(s)	8, 442, 626
Tsp45I	GTSAC	2 cut(s)	358, 938
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	2 cut(s)	526, 930
TspRI	CASTG	1 cut(s)	110
VneI	GTGCAC	1 cut(s)	217
VpaK11BI	GGWCC	3 cut(s)	278, 321, 603
XapI	RAATTY	1 cut(s)	675
XbaI	TCTAGA	1 cut(s)	965
XceI	RCATGY	2 cut(s)	380, 409
XspI	CTAG	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.